NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|571254908|emb|CAP12443|]
View 

NADH dehydrogenase subunit 1, partial (mitochondrion) [Poecilimon hamatus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 19-142 1.97e-62

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 193.45  E-value: 1.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00193  14 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPY 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908  99 MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00193  94 LFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRS 137
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 19-142 1.97e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 193.45  E-value: 1.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00193  14 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPY 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908  99 MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00193  94 LFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRS 137
NADHdh pfam00146
NADH dehydrogenase;
19-142 2.45e-39

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 134.14  E-value: 2.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908   19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:pfam00146   8 PLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPF 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 571254908   99 --MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:pfam00146  88 gpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRA 133
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 20-141 2.98e-37

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 129.48  E-value: 2.98e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY- 98
Cdd:COG1005   22 LLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFg 101

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908  99 -MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:COG1005  102 pGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALR 145
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 19-142 1.97e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 193.45  E-value: 1.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00193  14 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPY 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908  99 MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00193  94 LFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRS 137
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 19-142 4.30e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 182.54  E-value: 4.30e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00225  13 CLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPS 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908  99 MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00225  93 MFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRA 136
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 19-142 2.99e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 172.75  E-value: 2.99e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00143  13 CVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPS 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908  99 MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00143  93 YFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRA 136
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 20-141 4.54e-44

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 146.96  E-value: 4.54e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00111  18 ILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMP 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 571254908 100 TMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:MTH00111  98 FPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALR 139
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 20-141 1.79e-43

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 145.15  E-value: 1.79e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00104  13 ILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPLPMP 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 571254908 100 TMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:MTH00104  93 YPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALR 134
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 21-142 4.60e-43

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 144.15  E-value: 4.60e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  21 LVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPYMT 100
Cdd:MTH00010  17 LLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKH 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 571254908 101 MLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00010  97 PSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRS 138
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 19-141 9.41e-43

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 142.96  E-value: 9.41e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00195  14 PVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPS 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 571254908  99 MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:MTH00195  94 PFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIR 136
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 19-142 1.31e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 142.74  E-value: 1.31e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00218  14 PVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPL 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908  99 MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00218  94 PFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRA 137
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 20-141 9.78e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 140.91  E-value: 9.78e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00071  18 VLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMP 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 571254908 100 TMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:MTH00071  98 NNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALR 139
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 20-142 6.51e-41

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 138.57  E-value: 6.51e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00040  17 VLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVP 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 571254908 100 TMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00040  97 TPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRA 139
NADHdh pfam00146
NADH dehydrogenase;
19-142 2.45e-39

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 134.14  E-value: 2.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908   19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:pfam00146   8 PLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPF 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 571254908   99 --MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:pfam00146  88 gpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRA 133
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 20-141 2.49e-38

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 132.04  E-value: 2.49e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00134  19 VLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMP 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 571254908 100 TMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:MTH00134  99 YPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALR 140
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 20-141 2.98e-37

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 129.48  E-value: 2.98e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY- 98
Cdd:COG1005   22 LLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFg 101

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908  99 -MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:COG1005  102 pGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALR 145
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 20-141 1.84e-35

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 124.85  E-value: 1.84e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00216  19 LLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYE 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908 100 --TMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:MTH00216  99 rgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIR 142
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
20-142 2.91e-35

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 124.15  E-value: 2.91e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY- 98
Cdd:PRK06076  23 VLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFg 102

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 571254908  99 -MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:PRK06076 103 pELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRA 147
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 19-142 2.46e-34

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 121.76  E-value: 2.46e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00054  14 PLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPY 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 571254908  99 MT--MLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRG 142
Cdd:MTH00054  94 GEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRA 139
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 19-144 5.91e-29

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 106.52  E-value: 5.91e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  19 CVLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPY 98
Cdd:MTH00090   8 FILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPY 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 571254908  99 MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLRGGS 144
Cdd:MTH00090  88 FFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASS 133
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 20-141 9.72e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 102.02  E-value: 9.72e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKEGSNPVLSNYIMYCLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00029  20 LLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMD 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254908 100 TMLF--SFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:MTH00029 100 QGVFlsDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIR 143
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 20-141 3.56e-18

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 78.43  E-value: 3.56e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGYVGLPQPMADAMKLFTKegsnpvlSNYIMYCLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVK-------FKVYGFQSRSWFSLFGVFLLVLLVVFY 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 571254908 100 TMLFSF-------NLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:MTH00058  87 CFIYGSyysgsysSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIR 135
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
26-141 7.27e-03

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 35.16  E-value: 7.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254908  26 FLTLLERKVLGYIQIRKGPnkvgyvGLPQPMADAMKLFTKEGSNPVLSNYIMYcLSPVVSL----FLALLVWMIYPYMTM 101
Cdd:COG0650   20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFR-AAPYVALaamlLAALLVPVLTTGPPL 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 571254908 102 LFSFNLGLLFFLccTSMGVYTVMIAGWSSNSNYALLGGLR 141
Cdd:COG0650   93 SFSGDLIVLVYL--LALARFFLALAGLDSGSPFGGIGASR 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH