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Conserved domains on  [gi|571254771|emb|CAP12375|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Poecilimon ebneri]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 17-140 8.82e-64

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 196.91  E-value: 8.82e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSL 135
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 17-140 8.82e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 196.91  E-value: 8.82e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSL 135
NADHdh pfam00146
NADH dehydrogenase;
17-140 1.29e-39

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 134.91  E-value: 1.29e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771   17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 571254771   97 PY--MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:pfam00146  86 PFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGAL 131
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 17-140 7.69e-38

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 131.02  E-value: 7.69e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVI 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 571254771  97 PY--MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:COG1005   99 PFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGAL 144
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 17-140 8.82e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 196.91  E-value: 8.82e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSL 135
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 17-140 7.72e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 181.77  E-value: 7.72e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00225  11 LICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLY 90

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00225  91 PSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGAL 134
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 18-140 2.54e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 172.75  E-value: 2.54e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  18 ICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIYP 97
Cdd:MTH00143  12 LCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYP 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 571254771  98 YMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00143  92 SYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAV 134
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 17-140 1.31e-43

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 145.54  E-value: 1.31e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00104  10 IIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPL 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00104  90 PMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGAL 133
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 17-140 1.43e-43

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 145.42  E-value: 1.43e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00111  15 IIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPL 94

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00111  95 PMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGAL 138
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 17-140 2.64e-43

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 144.67  E-value: 2.64e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00218  12 ILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPL 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00218  92 PLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGAL 135
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 17-140 2.22e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 142.19  E-value: 2.22e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00195  12 IVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPI 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00195  92 PSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAI 135
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 17-140 2.56e-42

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 142.23  E-value: 2.56e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00010  13 YVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLY 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00010  93 PHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGAL 136
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 17-140 4.98e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 141.68  E-value: 4.98e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00071  15 IIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPL 94

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00071  95 PMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGAL 138
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 17-140 2.79e-41

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 139.73  E-value: 2.79e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00040  14 IVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLI 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00040  94 PVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAI 137
NADHdh pfam00146
NADH dehydrogenase;
17-140 1.29e-39

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 134.91  E-value: 1.29e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771   17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 571254771   97 PY--MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:pfam00146  86 PFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGAL 131
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 17-140 6.64e-38

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 130.88  E-value: 6.64e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00134  16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPM 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00134  96 PMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGAL 139
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 17-140 7.69e-38

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 131.02  E-value: 7.69e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVI 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 571254771  97 PY--MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:COG1005   99 PFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGAL 144
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 17-140 4.18e-35

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 123.69  E-value: 4.18e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00216  16 IVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVI 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 571254771  97 PYM--TMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00216  96 PYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAI 141
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
17-140 4.32e-35

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 123.38  E-value: 4.32e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:PRK06076  20 LVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVI 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 571254771  97 PY--MTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:PRK06076 100 PFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGAL 145
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 17-140 1.70e-34

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 122.14  E-value: 1.70e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00054  12 LVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVI 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 571254771  97 PYMT--MLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00054  92 PYGEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAI 137
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 17-140 8.85e-29

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 106.14  E-value: 8.85e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIY 96
Cdd:MTH00090   6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVL 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 571254771  97 PYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:MTH00090  86 PYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGAL 129
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 20-143 1.37e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 104.33  E-value: 1.37e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  20 VLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIYPYM 99
Cdd:MTH00029  20 LLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMD 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 571254771 100 TMLF--SFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLPCG 143
Cdd:MTH00029 100 QGVFlsDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCA 145
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-142 7.62e-18

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 77.27  E-value: 7.62e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  18 ICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSPVVSLFLALLVWMIYP 97
Cdd:MTH00058  12 LIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYG 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 571254771  98 YMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGLPC 142
Cdd:MTH00058  92 SYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRS 136
ndhA CHL00032
NADH dehydrogenase subunit 1
 17-140 4.16e-12

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 61.89  E-value: 4.16e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  17 IICVLVGMAFLTLLERKVLGYIQIRKGPNKVGFVGLPQPLADAMKLFTKEGFNPVLSNYTMYYLSP---VVSLFLALLVw 93
Cdd:CHL00032  37 VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPsiaVISILLSYLV- 115

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 571254771  94 MIYPYMTMLFSFNLGLLFFLCCTSMGVYTVMIAGWSSNSNYALLGGL 140
Cdd:CHL00032 116 IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGL 162
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
26-139 4.88e-03

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 35.93  E-value: 4.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571254771  26 FLTLLERKVLGYIQIRKGPnkvgfvGLPQPLADAMKLFTKEgfnPVLSNYT--MYYLSPVVSL----FLALLVWMIYPYM 99
Cdd:COG0650   20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKE---TVVPETAswLFRAAPYVALaamlLAALLVPVLTTGP 90

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 571254771 100 TMLFSFNLGLLFFLccTSMGVYTVMIAGWSSNSNYALLGG 139
Cdd:COG0650   91 PLSFSGDLIVLVYL--LALARFFLALAGLDSGSPFGGIGA 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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