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Conserved domains on  [gi|570726583|gb|AHE97891|]
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preprotein translocase subunit SecF [Thioalkalivibrio paradoxus ARh 1]

Protein Classification

protein translocase subunit SecF( domain architecture ID 11417410)

protein translocase subunit SecF is part of the Sec protein translocase complex; SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA

Gene Ontology:  GO:0015450|GO:0043952
TCDB:  2.A.6.4

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 5-286 5.50e-118

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 341.26  E-value: 5.50e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   5 LNFAESNINFLGRRKIAIAFSIVLILASVLLLATRGLNFGIDFTGGTLVEVGYPDAVELDPIRQQLDEGGFERATVVYFG 84
Cdd:COG0341    2 LFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  85 TSRDVLIRLPPRADDpdQAELSNQVLRALEAGGPDgVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRF 164
Cdd:COG0341   82 SDNDVLIRTPPLDGE--SAEEVEKVRAALKEAFGD-VEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 165 AVGSVLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTI 244
Cdd:COG0341  159 AVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTI 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 570726583 245 VTSTTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFI 286
Cdd:COG0341  239 NTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFI 280
 
Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 5-286 5.50e-118

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 341.26  E-value: 5.50e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   5 LNFAESNINFLGRRKIAIAFSIVLILASVLLLATRGLNFGIDFTGGTLVEVGYPDAVELDPIRQQLDEGGFERATVVYFG 84
Cdd:COG0341    2 LFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  85 TSRDVLIRLPPRADDpdQAELSNQVLRALEAGGPDgVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRF 164
Cdd:COG0341   82 SDNDVLIRTPPLDGE--SAEEVEKVRAALKEAFGD-VEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 165 AVGSVLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTI 244
Cdd:COG0341  159 AVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTI 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 570726583 245 VTSTTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFI 286
Cdd:COG0341  239 NTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFI 280
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 10-315 2.29e-87

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 277.11  E-value: 2.29e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  10 SNINFLGRRKIAIAFSIVLILASVLLLATRGLNFGIDFTGGTLVEVGYPDAVELDPIRQQLDEGGFERATVVYFGT-SRD 88
Cdd:PRK13024 447 DRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQ 526

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  89 VLIRLPPRADDPDQA--ELSNQVLRALEAGGPDGVElrRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAV 166
Cdd:PRK13024 527 VLVRTYGILSDDEEAdtEIVAKLKNALKNDKGGTIP--SSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSL 604

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 167 GSVLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVT 246
Cdd:PRK13024 605 GAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINT 684

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 570726583 247 STTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFIAAAAALMLGVDRKVLLPVKKEGAEQEETP 315
Cdd:PRK13024 685 SLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRLKKKKKRKKVKKWEVEK 753
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 40-286 1.47e-75

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 231.78  E-value: 1.47e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   40 GLNFGIDFTGGTLVEVGYPDAVELDPIRQQLDEGGFERATVVYFGTSRDVLIRLPPRADDPdQAELSNQVLRALEAGGPD 119
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQ-SEELREALEEALKNVDPD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  120 gVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAVGSVLALVHDVTLTLGFFALTQMEFDLAVLAAVL 199
Cdd:TIGR00966  80 -AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  200 AVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVTSTTTLLVLLALFVLGGAALNNFAIALIVGVLVG 279
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238


                  ....*..
gi 570726583  280 TYSSIFI 286
Cdd:TIGR00966 239 TYSSIFI 245
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 108-297 1.51e-55

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 178.57  E-value: 1.51e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  108 QVLRALEAGGPDgVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAVGSVLALVHDVTLTLGFFALTQ 187
Cdd:pfam02355   1 VVEALLKNVGPD-AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  188 MEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVTSTTTLLVLLALFVLGGAALNN 267
Cdd:pfam02355  80 IEVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKD 159

                         170       180       190
                  ....*....|....*....|....*....|
gi 570726583  268 FAIALIVGVLVGTYSSIFIAAAAALMLGVD 297
Cdd:pfam02355 160 FSLALLVGVIVGTYSSIFIASPILLDLGER 189
 
Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 5-286 5.50e-118

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 341.26  E-value: 5.50e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   5 LNFAESNINFLGRRKIAIAFSIVLILASVLLLATRGLNFGIDFTGGTLVEVGYPDAVELDPIRQQLDEGGFERATVVYFG 84
Cdd:COG0341    2 LFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  85 TSRDVLIRLPPRADDpdQAELSNQVLRALEAGGPDgVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRF 164
Cdd:COG0341   82 SDNDVLIRTPPLDGE--SAEEVEKVRAALKEAFGD-VEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 165 AVGSVLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTI 244
Cdd:COG0341  159 AVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTI 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 570726583 245 VTSTTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFI 286
Cdd:COG0341  239 NTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFI 280
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 10-315 2.29e-87

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 277.11  E-value: 2.29e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  10 SNINFLGRRKIAIAFSIVLILASVLLLATRGLNFGIDFTGGTLVEVGYPDAVELDPIRQQLDEGGFERATVVYFGT-SRD 88
Cdd:PRK13024 447 DRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQ 526

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  89 VLIRLPPRADDPDQA--ELSNQVLRALEAGGPDGVElrRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAV 166
Cdd:PRK13024 527 VLVRTYGILSDDEEAdtEIVAKLKNALKNDKGGTIP--SSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSL 604

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 167 GSVLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVT 246
Cdd:PRK13024 605 GAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINT 684

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 570726583 247 STTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFIAAAAALMLGVDRKVLLPVKKEGAEQEETP 315
Cdd:PRK13024 685 SLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRLKKKKKRKKVKKWEVEK 753
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 40-286 1.47e-75

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 231.78  E-value: 1.47e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   40 GLNFGIDFTGGTLVEVGYPDAVELDPIRQQLDEGGFERATVVYFGTSRDVLIRLPPRADDPdQAELSNQVLRALEAGGPD 119
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQ-SEELREALEEALKNVDPD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  120 gVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAVGSVLALVHDVTLTLGFFALTQMEFDLAVLAAVL 199
Cdd:TIGR00966  80 -AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  200 AVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVTSTTTLLVLLALFVLGGAALNNFAIALIVGVLVG 279
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238


                  ....*..
gi 570726583  280 TYSSIFI 286
Cdd:TIGR00966 239 TYSSIFI 245
PRK14726 PRK14726
protein translocase subunit SecDF;
7-286 1.07e-71

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 237.31  E-value: 1.07e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   7 FAESNINFLGRRKIAIAFSIVLILASVLLLATRGLNFGIDFTGGTLVEVGYPDAV-ELDPIRQQLDEGGFERATVVYFGT 85
Cdd:PRK14726 542 FEGANIRFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQGNaDIADIRARLNELNLGEVQVERFGS 621

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  86 SRDVLIRLPPRaDDPDQAELS--NQVLRALEaggpDGVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWR 163
Cdd:PRK14726 622 PRDALIRIASQ-DGGENAEQSavTLVRGELE----DDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQ 696

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 164 FAVGSVLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLART 243
Cdd:PRK14726 697 FAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRT 776

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 570726583 244 IVTSTTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFI 286
Cdd:PRK14726 777 VLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYI 819
secF PRK13021
preprotein translocase subunit SecF; Reviewed
 11-299 1.03e-62

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 237274 [Multi-domain]  Cd Length: 297  Bit Score: 200.85  E-value: 1.03e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  11 NINFLGRRKIAIAFSIVLILASVLLLATRGLNFGIDFTGGTLVEVGYPDAVELDPIRQQLDEGGFERATVVYFG-TSRDV 89
Cdd:PRK13021   3 NINLTKWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASePGRWV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  90 LirlppRADDPDQAELSNQVLRALEAGGPDgVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAVGSV 169
Cdd:PRK13021  83 L-----RYAPADTAQSNVDIQQALAPLGTE-VQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 170 LALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVTSTT 249
Cdd:PRK13021 157 FALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGT 236

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 570726583 250 TLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFIAAAAALMLGVDRK 299
Cdd:PRK13021 237 TLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPE 286
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 108-297 1.51e-55

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 178.57  E-value: 1.51e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  108 QVLRALEAGGPDgVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAVGSVLALVHDVTLTLGFFALTQ 187
Cdd:pfam02355   1 VVEALLKNVGPD-AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  188 MEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVTSTTTLLVLLALFVLGGAALNN 267
Cdd:pfam02355  80 IEVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKD 159

                         170       180       190
                  ....*....|....*....|....*....|
gi 570726583  268 FAIALIVGVLVGTYSSIFIAAAAALMLGVD 297
Cdd:pfam02355 160 FSLALLVGVIVGTYSSIFIASPILLDLGER 189
PRK13023 PRK13023
protein translocase subunit SecDF;
10-296 2.54e-42

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 155.55  E-value: 2.54e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  10 SNINFLGRRKIAIAFSIVLILASVLLLATRGLNFGIDFTGGTLVEVGYPDA-VELDPIRQQLDEGGFERATVVYFGTSRD 88
Cdd:PRK13023 451 THIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNGdANLEDINERLAELNIDSARVLPAKSPRS 530

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  89 VLIRLPPR--ADDPDQAelsnqVLRALEAGGPDGVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAV 166
Cdd:PRK13023 531 ALVIIGSQevGDDAEQT-----VAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLAL 605

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 167 GSVLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVT 246
Cdd:PRK13023 606 GAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLT 685

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 570726583 247 STTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFIAAAAALMLGV 296
Cdd:PRK13023 686 SFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGL 735
2A0604s01 TIGR00916
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ...
 115-284 5.80e-39

protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273336 [Multi-domain]  Cd Length: 192  Bit Score: 135.85  E-value: 5.80e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  115 AGGPDGVELRRVEFVG---PAVGEELREQGGLAMIYALFGILIYVAVRFEWRFAVGSVLALVHDVTLTLGFFALTQMEFD 191
Cdd:TIGR00916  20 AIVLDNAKVISAPVVGtvgPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLT 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  192 LAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMNNAVNKTLARTIVTSTTTLLVLLALFVLGGAALNNFAIA 271
Cdd:TIGR00916 100 LPGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALT 179

                         170
                  ....*....|...
gi 570726583  272 LIVGVLVGTYSSI 284
Cdd:TIGR00916 180 LGIGVIAGTYSSI 192
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 32-286 8.28e-28

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 113.80  E-value: 8.28e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   32 SVLLLATRGLNFG-------IDFTGGTLVEVGYPDAVELDP------IRQQLDEGGFERA--TVVYFGTSRDVLIRLPPR 96
Cdd:PRK12911 1096 SVLVLGCVALGFGawnsvlgMDFKGGYALTLDPSDVCEYDVeqmrskLRKKFQQIGLSSRdfRIRTFDSSEKIKIYFSQN 1175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   97 ADDPDQA-----------ELSnQVLRALEAGGPDGV-----ELRRVEF-VGPAVGEELREQGGLAMIYALFGILIYVAVR 159
Cdd:PRK12911 1176 ALDRVEAiegagseqsdhHLA-LVLGVLSDTGSDTSsevfdATQNFWFkVSGQLSNKMRTQAVIALFGALGIILLYVSLR 1254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  160 FEWRFAVGSVLALVHD------VTLTLGFFaLTQMEFDLAVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKEGTEFVMN 233
Cdd:PRK12911 1255 FEWRYAFSAICALIHDllatcaVLVALHFF-LQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILIN 1333

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 570726583  234 NAVNKTLARTIVTSTTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFI 286
Cdd:PRK12911 1334 DALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYI 1386
PRK08578 PRK08578
preprotein translocase subunit SecF; Reviewed
 7-228 1.30e-11

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 236302 [Multi-domain]  Cd Length: 292  Bit Score: 64.18  E-value: 1.30e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583   7 FAESNINFLGRRKIAIAFSIVLILASVLLLATR-----GLNFGIDFTGGTLVEVGYPDAVeLDPIRQQLDEggfERATVV 81
Cdd:PRK08578   3 VPEVDYMKYSNRQLIAIPLAVLLLSLLLLGGTFattgsPVKLGIDFTGGTEITIQTNDAS-PDELESALSG---EPGVDV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  82 YFGTSRDVLIRLPPrADDPDQAELSNQVLRALEAGGPDGVELRRVEfVGPAVGEELREQGGLAMIYALFGILIYVAVRFe 161
Cdd:PRK08578  79 RKGSGNGYIITFGS-GDDTDVDKLADAVKEFFNVDSISELNYSEKQ-IGPTFGSQFQEQALKAVGFAFIGMAVVVFLIF- 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 162 wRFAVGS---VLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLNDTIVVydrireNFRILRKEGT 228
Cdd:PRK08578 156 -RTPVPSlavILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILL------TTRVLKRRGT 218
Sec_GG pfam07549
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ...
 35-57 2.34e-06

SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.


Pssm-ID: 462205 [Multi-domain]  Cd Length: 27  Bit Score: 43.43  E-value: 2.34e-06
                          10        20
                  ....*....|....*....|...
gi 570726583   35 LLATRGLNFGIDFTGGTLVEVGY 57
Cdd:pfam07549   1 SLFTRGLNLGLDFTGGTVIELQF 23
secD TIGR01129
protein-export membrane protein SecD; Members of this family are highly variable in length ...
 129-286 3.15e-04

protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273456 [Multi-domain]  Cd Length: 397  Bit Score: 41.89  E-value: 3.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  129 VGPAVGEELREQGGLAMIYALFGILIYVAVRFEWrFAVGSVLALVHDVTLTLGFFALTQMEFDLAVLAAVLAVIGYSLND 208
Cdd:TIGR01129 238 IGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDA 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583  209 TIVVYDRIRENFRilrkEGTEFV--MNNAVNKTLARTIVTSTTTLLVLLALFVLGGAALNNFAIALIVGVLVGTYSSIFI 286
Cdd:TIGR01129 317 NVLIYERIKEELR----LGKSVRqaIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVF 392
secD PRK08343
preprotein translocase subunit SecD; Reviewed
 112-216 6.21e-03

preprotein translocase subunit SecD; Reviewed


Pssm-ID: 236245 [Multi-domain]  Cd Length: 417  Bit Score: 37.93  E-value: 6.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570726583 112 ALEAGG-PDGVELRRVEFVGPAVGEELREQGGLAMIYALFGILIYVAVRF-EWRFAVGSVLALVHDVTLTLGFFALTQME 189
Cdd:PRK08343 233 HLRSGAlPVKLDIEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYrEPRIALPMVITSLSEVIIILGFAALIGWQ 312

                         90       100
                 ....*....|....*....|....*..
gi 570726583 190 FDLAVLAAVLAVIGYSLNDTIVVYDRI 216
Cdd:PRK08343 313 LDLASIAGIIAVIGTGVDDLIIITDEV 339
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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