NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|570294795|gb|ETO50206|]
View 

hypothetical protein L327_0120655 [Yersinia pestis S3]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
type_III_yscD super family cl37128
type III secretion apparatus protein, YscD/HrpQ family; This family represents a conserved ...
 2-137 6.28e-52

type III secretion apparatus protein, YscD/HrpQ family; This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


The actual alignment was detected with superfamily member TIGR02500:

Pssm-ID: 274166 [Multi-domain]  Cd Length: 410  Bit Score: 169.16  E-value: 6.28e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570294795    2 VNAHSGQIQQLVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQQLKETLAALSQQQPGFPSVRYQNIPASDRTDQFLP 81
Cdd:TIGR02500 275 VRVASDVIAQLASLLSDAGLLGVVTVTESGREIALSGQLDSEKRSRLQELLAAFKQRDGVIPDVVLQNIPAADGTSDELP 354

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 570294795   82 AKVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHIPM 137
Cdd:TIGR02500 355 FPVVSISGSGPNPYVVLADGQRLFVGARLPGGYRIVAISPDGLTLEKGGRLIRIPL 410
 
Name Accession Description Interval E-value
type_III_yscD TIGR02500
type III secretion apparatus protein, YscD/HrpQ family; This family represents a conserved ...
 2-137 6.28e-52

type III secretion apparatus protein, YscD/HrpQ family; This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274166 [Multi-domain]  Cd Length: 410  Bit Score: 169.16  E-value: 6.28e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570294795    2 VNAHSGQIQQLVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQQLKETLAALSQQQPGFPSVRYQNIPASDRTDQFLP 81
Cdd:TIGR02500 275 VRVASDVIAQLASLLSDAGLLGVVTVTESGREIALSGQLDSEKRSRLQELLAAFKQRDGVIPDVVLQNIPAADGTSDELP 354

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 570294795   82 AKVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHIPM 137
Cdd:TIGR02500 355 FPVVSISGSGPNPYVVLADGQRLFVGARLPGGYRIVAISPDGLTLEKGGRLIRIPL 410
PRK15367 PRK15367
EscD/YscD/HrpQ family type III secretion system inner membrane ring protein;
3-139 1.57e-21

EscD/YscD/HrpQ family type III secretion system inner membrane ring protein;


Pssm-ID: 185265  Cd Length: 395  Bit Score: 88.43  E-value: 1.57e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570294795   3 NAHSGQIQQLVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQQLKETLAALSQQQPGFpSVRYQNIPASDRTDQFLPA 82
Cdd:PRK15367 260 HSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALKKKDPAL-SLIYQDIAPSHDESKYLPA 338

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 570294795  83 KVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHIPMDF 139
Cdd:PRK15367 339 PVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHYDTLINYPLDF 395
 
Name Accession Description Interval E-value
type_III_yscD TIGR02500
type III secretion apparatus protein, YscD/HrpQ family; This family represents a conserved ...
 2-137 6.28e-52

type III secretion apparatus protein, YscD/HrpQ family; This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274166 [Multi-domain]  Cd Length: 410  Bit Score: 169.16  E-value: 6.28e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570294795    2 VNAHSGQIQQLVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQQLKETLAALSQQQPGFPSVRYQNIPASDRTDQFLP 81
Cdd:TIGR02500 275 VRVASDVIAQLASLLSDAGLLGVVTVTESGREIALSGQLDSEKRSRLQELLAAFKQRDGVIPDVVLQNIPAADGTSDELP 354

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 570294795   82 AKVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHIPM 137
Cdd:TIGR02500 355 FPVVSISGSGPNPYVVLADGQRLFVGARLPGGYRIVAISPDGLTLEKGGRLIRIPL 410
PRK15367 PRK15367
EscD/YscD/HrpQ family type III secretion system inner membrane ring protein;
3-139 1.57e-21

EscD/YscD/HrpQ family type III secretion system inner membrane ring protein;


Pssm-ID: 185265  Cd Length: 395  Bit Score: 88.43  E-value: 1.57e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 570294795   3 NAHSGQIQQLVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQQLKETLAALSQQQPGFpSVRYQNIPASDRTDQFLPA 82
Cdd:PRK15367 260 HSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALKKKDPAL-SLIYQDIAPSHDESKYLPA 338

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 570294795  83 KVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHIPMDF 139
Cdd:PRK15367 339 PVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHYDTLINYPLDF 395
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH