|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
510-1286 |
3.94e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.98 E-value: 3.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 510 VNKQYER-EKQ-RLATGIEELRAKLTQIEAENSDLKVNMAHrtsqfqliqEELLEKASNASKLENEMTKKCSQLLILEKQ 587
Cdd:TIGR02168 198 LERQLKSlERQaEKAERYKELKAELRELELALLVLRLEELR---------EELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 588 LEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHlEQHKEMEKQIEQLETQLEKRDQQFK 667
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE-AQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 668 EQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEA---LKALQIHVSEETIKVRQLDSALEICKEELALHL 744
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLelqIASLNNEIERLEARLERLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 745 NQLERN-KEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSK 823
Cdd:TIGR02168 428 KKLEEAeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 824 QEQELQKQRESSTE-----KLRKMEEKYETAI--------------------------REVDLKRQKIIELT-------- 864
Cdd:TIGR02168 508 VKALLKNQSGLSGIlgvlsELISVDEGYEAAIeaalggrlqavvvenlnaakkaiaflKQNELGRVTFLPLDsikgteiq 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 865 GTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQL---SQLDMVLDQTKTELEKTTNSVKELERL------------ 929
Cdd:TIGR02168 588 GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvDDLDNALELAKKLRPGYRIVTLDGDLVrpggvitggsak 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 930 ----QHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ 1005
Cdd:TIGR02168 668 tnssILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1006 ELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEM---EQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLR 1082
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIeelEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1083 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQnthselvEARRQEVQAQ 1162
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA-------LLRSELEELS 900
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1163 REIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLEARmqaeikklssevdsLKEAYQIEMISHQENHAKWKLS 1242
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER--------------LSEEYSLTLEEAEALENKIEDD 966
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 568936279 1243 AESQKTSVQQLNEQLEK-------AKQELEEAQDTVSNLHQQVQDRNEVIE 1286
Cdd:TIGR02168 967 EEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
645-1311 |
3.15e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.82 E-value: 3.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 645 HKEMEKQIEQLETQLEK--RDQQFKEQEKTM--SILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVS 720
Cdd:TIGR02168 195 LNELERQLKSLERQAEKaeRYKELKAELRELelALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 721 EetikVRQLDSALEICKEELALHLNQLERnkekFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNailqhtlqqqqqml 800
Cdd:TIGR02168 275 E----VSELEEEIEELQKELYALANEISR----LEQQKQILRERLANLERQLEELEAQLEELESKL-------------- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 801 qqetmrngeleDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEE 880
Cdd:TIGR02168 333 -----------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 881 LSKMEKEIIHLKRDGENKSMQLSQLDMVLDqtKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKS 960
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 961 TLRQLQELR---DVLQKAQLSLEEKYTTIKDLTAElRECKMEIEDKKQELIEMD-------------------------- 1011
Cdd:TIGR02168 480 AERELAQLQarlDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDegyeaaieaalggrlqavvvenlnaa 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1012 ----QALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESL------NEKLQNAKEQL 1081
Cdd:TIGR02168 559 kkaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvVDDLDNALELA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1082 REKEFIML--------------------QNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQ 1141
Cdd:TIGR02168 639 KKLRPGYRivtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1142 EQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLEARM---QAEIKKLSSEV 1218
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIeelEAQIEQLKEEL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1219 DSLKEAY-----------------QIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDR 1281
Cdd:TIGR02168 799 KALREALdelraeltllneeaanlRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
730 740 750
....*....|....*....|....*....|
gi 568936279 1282 NEVIEAANEALLIKESELTRLQAKISGHEK 1311
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELES 908
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
819-1313 |
7.82e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.53 E-value: 7.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 819 KQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENK 898
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 899 SMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLS 978
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 979 LEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKernwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSEL 1058
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALA----ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1059 ELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMkemesvIKEQEDYIATQYKEVIDLGQELR 1138
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG------LAGAVAVLIGVEAAYEAALEAAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1139 LTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLSSEV 1218
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1219 DSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESE 1298
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
490
....*....|....*
gi 568936279 1299 LTRLQAKISGHEKTE 1313
Cdd:COG1196 705 EERELAEAEEERLEE 719
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
115-888 |
1.15e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 1.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 115 EVKNLREKLHKLRQQNACLVTQNHSLMTKIESVHFELTQSKAKIAMLESAQEQA--------ANIPILEEQIINLEAEVS 186
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaNEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 187 AQDKVLREAEDKLEQSQKMVIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQLYKEKVAEKL 266
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 267 EKVQDEEEILERNlsncEKENKRLQEKCNLYKSELEILKEKFRELKEehysgKEKLMIMAMKNSEVMSQLTESRQCILKL 346
Cdd:TIGR02168 393 LQIASLNNEIERL----EARLERLEDRRERLQQEIEELLKKLEEAEL-----KELQAELEELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 347 ERELEDKDEIVREKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIPLKREIVGFRSS--------L 418
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaaL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 419 CKHQRSSVSDKEDKCIGCCEA------NKLMISELRIklaIREAEIQKLHANLTVNQLS--------------------- 471
Cdd:TIGR02168 544 GGRLQAVVVENLNAAKKAIAFlkqnelGRVTFLPLDS---IKGTEIQGNDREILKNIEGflgvakdlvkfdpklrkalsy 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 472 --------------QNVANDSQECGKVNTLETEPVKLGGSQVESIKDGDQQTVNKQYErekqrlatgIEELRAKLTQIEA 537
Cdd:TIGR02168 621 llggvlvvddldnaLELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRRE---------IEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 538 ENSDLKVNMAHRTSQFQLIQEELlekaSNASKLENEMTKKCSQLLILEKQLEEKIiaySSIAAKNAELEQELMEKNEKIR 617
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEEL----EQLRKELEELSRQISALRKDLARLEAEV---EQLEERIAQLSKELTELEAEIE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 618 SLESNINTEHEKIcfafekakkihleqhKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQqdilcKQHHLESLDRLLTES 697
Cdd:TIGR02168 765 ELEERLEEAEEEL---------------AEAEAEIEELEAQIEQLKEELKALREALDELR-----AELTLLNEEAANLRE 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 698 KVEMEKENMkkdeALKALQIHVSEETIKVRQLDsaleicKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTH 777
Cdd:TIGR02168 825 RLESLERRI----AATERRLEDLEEQIEELSED------IESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 778 NLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAI----REV 853
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEeearRRL 974
|
810 820 830
....*....|....*....|....*....|....*
gi 568936279 854 DLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEI 888
Cdd:TIGR02168 975 KRLENKIKELGPVNLAAIEEYEELKERYDFLTAQK 1009
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
647-1224 |
2.01e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 2.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 647 EMEKQIEQLETQLEK--RDQQFKEQEKTMSILQqdILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETI 724
Cdd:COG1196 197 ELERQLEPLERQAEKaeRYRELKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 725 KVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEevycLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQET 804
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE----LEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 805 MRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKlrkmEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKM 884
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEEL----AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 885 EKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKRE-------ALENELQNAHGE 957
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAeaaarllLLLEAEADYEGF 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 958 LKSTLRQLQEL---RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNwelKQRAAQVTHLDMT 1034
Cdd:COG1196 507 LEGVKAALLLAglrGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK---AGRATFLPLDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1035 IREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1115 VIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELG 1194
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590
....*....|....*....|....*....|..
gi 568936279 1195 ASQVREAHLEARMQ--AEIKKLSSEVDSLKEA 1224
Cdd:COG1196 744 EEELLEEEALEELPepPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
909-1274 |
3.24e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 3.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 909 LDQTKTELEKTTNSVKELERLQHHTETElTETMQKREALENELQNAHGELksTLRQLQELRDVLQKAQLSLEEKYTTIKD 988
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQ-AEKAERYKELKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 989 LTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQkiiklegtlekselelkeCNKQVE 1068
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN------------------LERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1069 SLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQykevidlgqelrltQEQMQNTH 1148
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL--------------EEQLETLR 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1149 SELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLE-ARMQAEIKKLSSEVDSLKEAYqi 1227
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEAL-- 463
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568936279 1228 EMISHQENHAKWKL-SAESQKTSVQQLNEQLEKAKQELEEAQDTVSNL 1274
Cdd:TIGR02168 464 EELREELEEAEQALdAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
515-1306 |
2.96e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.10 E-value: 2.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 515 EREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCS-QLLILEKQLEEKII 593
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 594 AYSSIAAKNAELEQELMEKNEKIRSLESNINTEhekicfafekakkihLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTM 673
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKL---------------LAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 674 SILQQDilckqhhLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEEtikvRQLDSALEICKEELALHLNQLERNKEK 753
Cdd:TIGR02169 367 EDLRAE-------LEEVDKEFAETRDELKDYREKLEKLKREINELKREL----DRLQEELQRLSEELADLNAAIAGIEAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 754 ferqLKKKSEEVYCLQKELKIKTHNLEETSEQnailqHTLQQQQQMLQQETMRngELEDTQSKLEKQVSKQEQELQKQRE 833
Cdd:TIGR02169 436 ----INELEEEKEDKALEIKKQEWKLEQLAAD-----LSKYEQELYDLKEEYD--RVEKELSKLQRELAEAEAQARASEE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 834 SSTE--------------------KLRKMEEKYETAIR------------EVDLKRQKIIELTGTARQAKL------EMD 875
Cdd:TIGR02169 505 RVRGgraveevlkasiqgvhgtvaQLGSVGERYATAIEvaagnrlnnvvvEDDAVAKEAIELLKRRKAGRAtflplnKMR 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 876 QYKEELSKMEKE--------IIHLKRDGENKSMQLSQLDMVLDQTKTE----------------LEKT------TNSVKE 925
Cdd:TIGR02169 585 DERRDLSILSEDgvigfavdLVEFDPKYEPAFKYVFGDTLVVEDIEAArrlmgkyrmvtlegelFEKSgamtggSRAPRG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 926 LERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ 1005
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1006 ELIEMDQALKERNWELKQRAAQVthldmtirehrGEMEQKIIKLEGTLEksELELKECNKQVESLNEKLQNAKEQLREKE 1085
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARI-----------EELEEDLHKLEEALN--DLEARLSHSRIPEIQAELSKLEEEVSRIE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1086 FIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREI 1165
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1166 ERLAGELEDIKqlskekeahgnRLAEELGASQVREAHLEARMQAEIKKLSSEVDSLkEAYQIEMISHQENhakwKLSAES 1245
Cdd:TIGR02169 892 DELEAQLRELE-----------RKIEELEAQIEKKRKRLSELKAKLEALEEELSEI-EDPKGEDEEIPEE----ELSLED 955
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568936279 1246 QKTSVQQLNEQLE-------KAKQELEEAQDTVSNLhqqvQDRNEVIEAANEALLIKESELTRLQAKI 1306
Cdd:TIGR02169 956 VQAELQRVEEEIRalepvnmLAIQEYEEVLKRLDEL----KEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
141-971 |
9.24e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 9.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 141 MTKIESVHFELtqsKAKIAMLESAQEQAANIPILEEQIINLEAEVSAQDkvLREAEDKLEQSQKMVIEKEHSLQEAKEEc 220
Cdd:TIGR02168 188 LDRLEDILNEL---ERQLKSLERQAEKAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAE- 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 221 iklkVDLLEQSKQGKRAERQRNEALYNaeELSKAFQLYKEKVAEKlekvQDEEEILERNLSNCEKENKRLQEKCNLYKSE 300
Cdd:TIGR02168 262 ----LQELEEKLEELRLEVSELEEEIE--ELQKELYALANEISRL----EQQKQILRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 301 LEILKEKFRELKEEHYSGKEKLMIMAMKNSEVMSQLTESRQCILKLERELEDK----DEIVREKFSLLNENRELKVRVAT 376
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLrskvAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 377 QNERLELCQQDIDNSRVELKSLEKLITQIPL---KREIVGFRSSLCKHQRSSVSDKEDkcigcceanklmISELRIKLAI 453
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELeelEEELEELQEELERLEEALEELREE------------LEEAEQALDA 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 454 REAEIQKLHANLTVNQLSQNVANDSQECGKVNTLETEPVKLGGSQVesikdGDQQTVNKQYErekqrlaTGIEE-LRAKL 532
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVL-----SELISVDEGYE-------AAIEAaLGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 533 TQIEAENSD--------LKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAA---- 600
Cdd:TIGR02168 548 QAVVVENLNaakkaiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlv 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 601 ----KNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHKEM---EKQIEQLETQLEKRDQQFKEQEKTM 673
Cdd:TIGR02168 628 vddlDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIeelEEKIEELEEKIAELEKALAELRKEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 674 SILQQDILCKQHHLESLDRLLTESKVEMEKENmKKDEALKALQIHVSEETIKVRQLDSALEICKEELALHLNQLERNKEK 753
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLE-AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 754 FERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSkqeqELQKQRE 833
Cdd:TIGR02168 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE----SLAAEIE 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 834 SSTEKLRKMEEKYETAIREVDLKRQKIieltgtaRQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTK 913
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLEEAL-------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 568936279 914 TELEKTtnsvkeLERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDV 971
Cdd:TIGR02168 936 VRIDNL------QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV 987
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1090-1325 |
1.24e-12 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 71.33 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1090 QNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLA 1169
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1170 GELEDIKQLSkEKEAHGNRLAEELGASQVREAhleARMQAEIKKLSSEVDSLKEAYQiemiSHQENHAKWKLSAESQKTS 1249
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSPEDFLDA---VRRLQYLKYLAPARREQAEELR----ADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568936279 1250 VQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGHEKTEDTKYLPAPFTTL 1325
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
558-1102 |
2.54e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 2.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 558 EELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKA 637
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 638 KKihLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRL------LTESKVEMEKENMKKDEA 711
Cdd:PRK03918 283 KE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerleeLKKKLKELEKRLEELEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 712 LKALQIHVSEETIKVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQH 791
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 792 TLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTG----TA 867
Cdd:PRK03918 441 CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKynleEL 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 868 RQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREAL 947
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 948 EN---ELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEliemdqALKERNWELKQR 1024
Cdd:PRK03918 601 YNeylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE------ELREEYLELSRE 674
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568936279 1025 AAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSElELKECNKQVESLNEKLQNAKEQLRE-KEFIMLQNEQEISQLKKEI 1102
Cdd:PRK03918 675 LAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKLEKALERVEELREKVKKyKALLKERALSKVGEIASEI 752
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
515-1119 |
2.71e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 2.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 515 EREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIA 594
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 595 YSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHlEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMS 674
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE-EELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 675 ILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQihvseetikvRQLDSALEICKEELALHLNQLERNKEKF 754
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE----------ELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 755 ERQLKKKSEEvycLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQREs 834
Cdd:COG1196 453 ELEEEEEALL---ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV- 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 835 stekLRKMEEKYETAIREVDLKR--QKIIELTGTARQAKLEMDQYKEE------LSKMEKEIIHLKRDGENKSMQ---LS 903
Cdd:COG1196 529 ----LIGVEAAYEAALEAALAAAlqNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARGAIGAavdLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 904 QLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREA-LENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK 982
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLReVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 983 YTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKE 1062
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568936279 1063 CNKQVESLNEKLQN-------AKEQLRE----KEFIMLQNEqeisQLKKEIERTQQRMKEMESVIKEQ 1119
Cdd:COG1196 765 LERELERLEREIEAlgpvnllAIEEYEEleerYDFLSEQRE----DLEEARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
746-1114 |
4.26e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 4.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 746 QLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETS-EQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEkQVSKQ 824
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRrEREKAERYQALLKEKREYEGYELLKEKEALERQKE-AIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 825 EQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTarqaklEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQ 904
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE------EQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 905 LDMVLDQTKTELEKTTNSVKELERlqhhtetELTETMQKREALENELQnahgelkstlrqlqELRDVLQKAQLSLEEKYT 984
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELER-------EIEEERKRRDKLTEEYA--------------ELKEELEDLRAELEEVDK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 985 TIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREhrgeMEQKIIKLEGTLEKSELELKECN 1064
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG----IEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568936279 1065 KQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
826-1315 |
5.19e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 5.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 826 QELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTG---TARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQL 902
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREeleKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 903 SQLDMVLDQTKTELEKTTNSVKELERLQhhtetELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK 982
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELKELK-----EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 983 YTTIKDLTAELRECKMEIE--DKKQELIEMDQALKERNWELKQRAAQVTHLDM-----TIREHRGEMEQKIIKLEGTLEK 1055
Cdd:PRK03918 337 EERLEELKKKLKELEKRLEelEERHELYEEAKAKKEELERLKKRLTGLTPEKLekeleELEKAKEEIEEEISKITARIGE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1056 SELELKECNKQVESLNEK-----LQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQ---- 1126
Cdd:PRK03918 417 LKKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseli 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1127 -YKEVIDLGQELR-----LTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVRE 1200
Cdd:PRK03918 497 kLKELAEQLKELEeklkkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1201 AHLEARMQAEIKKLSSEVDSLKEAYQ--IEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQV 1278
Cdd:PRK03918 577 KELEELGFESVEELEERLKELEPFYNeyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
490 500 510
....*....|....*....|....*....|....*..
gi 568936279 1279 QDrnEVIEAANEALLIKESELTRLQAKISGHEKTEDT 1315
Cdd:PRK03918 657 SE--EEYEELREEYLELSRELAGLRAELEELEKRREE 691
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
260-1119 |
6.75e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 6.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 260 EKVAEKLEKVQDEEEILERNLSNCEKENK---RLQEKCN--------LYKSELEILKEKFRELKEEHYSGKEKLMIMAMK 328
Cdd:TIGR02168 182 ERTRENLDRLEDILNELERQLKSLERQAEkaeRYKELKAelrelelaLLVLRLEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 329 NSEVMSQLTESRQCILKLERELEdkdEIVREKFSLLNENRELKVRVATQNERLElcqqdidNSRVELKSLEKLITQIPLK 408
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIE---ELQKELYALANEISRLEQQKQILRERLA-------NLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 409 REIVGFRSSLCKHQRSSVSdkedkciGCCEANKLMISELRIKLAIREAEIQKLHANLtvNQLSQNVAndsQECGKVNTLE 488
Cdd:TIGR02168 332 LDELAEELAELEEKLEELK-------EELESLEAELEELEAELEELESRLEELEEQL--ETLRSKVA---QLELQIASLN 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 489 TEpVKLGGSQVESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNAS 568
Cdd:TIGR02168 400 NE-IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 569 KLENEMTKKCSQLLILEKQLEEkiiaYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEkicfaFEKAKKIHLE---QH 645
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQEN----LEGFSEGVKALLKNQSGLSGILGVLSELISVDEG-----YEAAIEAALGgrlQA 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 646 KEMEKQieqletQLEKRDQQFKEQEKT--MSILQQDILCKQHHLESLDRLLT--ESKVEMEKENMKKDEALKALQIHVSE 721
Cdd:TIGR02168 550 VVVENL------NAAKKAIAFLKQNELgrVTFLPLDSIKGTEIQGNDREILKniEGFLGVAKDLVKFDPKLRKALSYLLG 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 722 ETIKVRQLDSALEICKEELAL------------------------HLNQLERNKE--KFERQLKKKSEEVYCLQKELKIK 775
Cdd:TIGR02168 624 GVLVVDDLDNALELAKKLRPGyrivtldgdlvrpggvitggsaktNSSILERRREieELEEKIEELEEKIAELEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 776 THNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEkLRKMEEKYETAIREVDl 855
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE-LEERLEEAEEELAEAE- 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 856 krQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTET 935
Cdd:TIGR02168 782 --AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 936 ELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALK 1015
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1016 ernwELKQRAAQVTHLDMtirehrGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLRE----KEFImlqn 1091
Cdd:TIGR02168 940 ----NLQERLSEEYSLTL------EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEElkerYDFL---- 1005
|
890 900
....*....|....*....|....*...
gi 568936279 1092 EQEISQLKKEIERTQQRMKEMESVIKEQ 1119
Cdd:TIGR02168 1006 TAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
726-1306 |
8.84e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 70.15 E-value: 8.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 726 VRQLDSALEICKEELALHLNQLE----RNKEKFERQLKKKSEEVYCLQKELKIKTHNLEET-----SEQNAILQHTLQQQ 796
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEalksESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKassarSQANSIQSQLEIIQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 797 QQMLQQETMRNGELEDtqskLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQ 876
Cdd:pfam15921 306 EQARNQNSMYMRQLSD----LESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 877 YKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERL--------QHHTETELTETMQKREALE 948
Cdd:pfam15921 382 LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecQGQMERQMAAIQGKNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 949 nELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQV 1028
Cdd:pfam15921 462 -KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1029 THLDmtirehrgemeqkiiKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQR 1108
Cdd:pfam15921 541 DHLR---------------NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1109 MKEMEsVIKEQEDyiaTQYKEVIDLGQELRLTQEQMQNTHSELVEARRqevqaqreierlageleDIKQlskEKEahgnr 1188
Cdd:pfam15921 606 LQEFK-ILKDKKD---AKIRELEARVSDLELEKVKLVNAGSERLRAVK-----------------DIKQ---ERD----- 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1189 laeelgasqvreahleaRMQAEIKKLSSEVDSLKEAYQIEmishqenHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQ 1268
Cdd:pfam15921 657 -----------------QLLNEVKTSRNELNSLSEDYEVL-------KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTR 712
|
570 580 590
....*....|....*....|....*....|....*...
gi 568936279 1269 DTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKI 1306
Cdd:pfam15921 713 NTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKI 750
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-1211 |
1.41e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 512 KQYEREKQRLATGIEELRAKLTQIEAENSDLkvnMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEK 591
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKA---ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 592 IIAYSSIAAKNAELEQELMEKNEKIRSLesninTEHEKICFafekAKKIHleqhkEMEKQIEQLETQLEKRDQQFKEQEK 671
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDL-----GEEEQLRV----KEKIG-----ELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 672 TMSILQQDILCKQHHLESLDRLLTESKVEMEK---ENMKKDEALKALQIHVSEETIK---VRQLDSALEICKEELALHLN 745
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDKEfaeTRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 746 QLERNKEKFERQLKKKSEEVY---------------------CLQKELKIKTHNLEETSEQnailqHTLQQQQQMLQQET 804
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELAdlnaaiagieakineleeekeDKALEIKKQEWKLEQLAAD-----LSKYEQELYDLKEE 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 805 MRngELEDTQSKLEKQVSKQEQELQKQRESSTE--------------------KLRKMEEKYETAIR------------E 852
Cdd:TIGR02169 478 YD--RVEKELSKLQRELAEAEAQARASEERVRGgraveevlkasiqgvhgtvaQLGSVGERYATAIEvaagnrlnnvvvE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 853 VDLKRQKIIELTGTARQAKL------EMDQYKEELSKMEKE--------IIHLKRDGENKSMQLSQLDMVLDQTKTE--- 915
Cdd:TIGR02169 556 DDAVAKEAIELLKRRKAGRAtflplnKMRDERRDLSILSEDgvigfavdLVEFDPKYEPAFKYVFGDTLVVEDIEAArrl 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 916 -------------LEKT------TNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQ 976
Cdd:TIGR02169 636 mgkyrmvtlegelFEKSgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 977 LSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIrehrGEMEQKIIKLEGTLEKS 1056
Cdd:TIGR02169 716 RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL----HKLEEALNDLEARLSHS 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1057 ELElkECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQE 1136
Cdd:TIGR02169 792 RIP--EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568936279 1137 LRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLEARMQAEI 1211
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
154-781 |
1.70e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 154 SKAKIAMLESAQEQAANIPILEEQIINLEAEVSAQDKVLREAEDKLEQSQKMV--------------IEKEHSLQEAKEE 219
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgeeeqlrvkekIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 220 CIKLKVDLLEQS-KQGKRAERQRNEALYNAEELSKAFQLY---KEKVAEKLEKVQDEEEILERNLSNCEKENKRLQEKCN 295
Cdd:TIGR02169 309 SIAEKERELEDAeERLAKLEAEIDKLLAEIEELEREIEEErkrRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 296 LYKSELEILKEKFRELKEEHYSGKEKLMIMAMKNSEVMSQLTESRQCILKLERELEDKDEIVREKFSLLNENRELKVRVA 375
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 376 TQNERLELCQQDIDNSRVELKS-LEKLITQIPLKREIVGFRSSLCKHQRSS----------------------------- 425
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQReLAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaqlgsvgeryataievaagnr 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 426 -----VSDKED--KCIGCCEANKL----------MISELRIKLAIREA----------EIQKLHANLTVNQLSQNVANDS 478
Cdd:TIGR02169 549 lnnvvVEDDAVakEAIELLKRRKAgratflplnkMRDERRDLSILSEDgvigfavdlvEFDPKYEPAFKYVFGDTLVVED 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 479 QECGK-------VNTLETEPVKLGGSQVESIKDGDQQTVNKQYEREK-QRLATGIEEL-------RAKLTQIEAENSDLK 543
Cdd:TIGR02169 629 IEAARrlmgkyrMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAElQRLRERLEGLkrelsslQSELRRIENRLDELS 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 544 VNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNI 623
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 624 NteHEKICFAFEKAKKIHlEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDIlckqhhlesldRLLTESKVEMEK 703
Cdd:TIGR02169 789 S--HSRIPEIQAELSKLE-EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR-----------IDLKEQIKSIEK 854
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568936279 704 ENMKKDEALKALQIHVSEETIKVRQLDSALEICKEELALHLNQLeRNKEKFERQLKKKSEEVYCLQKELKIKTHNLEE 781
Cdd:TIGR02169 855 EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL-RELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
687-1306 |
7.12e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 7.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 687 LESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETIKVRQLDSALEICKEELALHLNQL---ERNKEKFERQLKKKSE 763
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLaslEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 764 EVYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRN-GELEDTQSKLEKQVSKQEQELQKQRESSTE----- 837
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSiAEKERELEDAEERLAKLEAEIDKLLAEIEElerei 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 838 -----KLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQT 912
Cdd:TIGR02169 346 eeerkRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 913 KTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAE 992
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 993 LRECK---MEIEDKKQ-------ELIEMD------------------------------QALKERNwelkqrAAQVTHLD 1032
Cdd:TIGR02169 506 VRGGRaveEVLKASIQgvhgtvaQLGSVGeryataievaagnrlnnvvveddavakeaiELLKRRK------AGRATFLP 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1033 MTiREHRGEMEQKIIKLEGTLEKSeLELKECNKQVES----------LNEKLQNAKEQLREKEFIMLQNE---------- 1092
Cdd:TIGR02169 580 LN-KMRDERRDLSILSEDGVIGFA-VDLVEFDPKYEPafkyvfgdtlVVEDIEAARRLMGKYRMVTLEGElfeksgamtg 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1093 ---------QEISQLKKEIERTQQRMKEMEsvikeqedyiatqyKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQR 1163
Cdd:TIGR02169 658 gsraprggiLFSRSEPAELQRLRERLEGLK--------------RELSSLQSELRRIENRLDELSQELSDASRKIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1164 EIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLEAR---MQAEIKKLSSEVDSLKEAY--------QIEMISH 1232
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARieeLEEDLHKLEEALNDLEARLshsripeiQAELSKL 803
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568936279 1233 QENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKI 1306
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
112-700 |
9.29e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 9.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 112 MDQEVKNLREKLHKLRQQNACLVTQNHSLMTKIESVHFELTQSKAKIAMLEsaqeqaANIPILEEQIINLEAEVSAQDKV 191
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK------EELESLEAELEELEAELEELESR 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 192 LREAEDKLEQSQKMVIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAEELS-KAFQLYKEKVAEKLEKVQ 270
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 271 DEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELK--EEHYSGKEKLMIMAMKNSEVMSQLTESRQCILKLER 348
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 349 ELE----------------DKDEIVREKFSLLNENRELKV-----RVATQNERLELCQQDIDNSRVELKSLEKLITQIPL 407
Cdd:TIGR02168 534 GYEaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVtflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 408 KREIVGFRSSLCK-----------------------------HQRSSVSDKEDKCIGCCEANKLMISELRIKLAIREAEI 458
Cdd:TIGR02168 614 LRKALSYLLGGVLvvddldnalelakklrpgyrivtldgdlvRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKI 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 459 QKLHANLTV---------NQLSQNVANDSQECGKVNTLETEPVKLGGSQVESIKDGDQQTVN-KQYEREKQRLATGIEEL 528
Cdd:TIGR02168 694 AELEKALAElrkeleeleEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElTELEAEIEELEERLEEA 773
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 529 RAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQE 608
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 609 LMEKNEKIRSLESNINTEHEKIcfafekakKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLE 688
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESEL--------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
650
....*....|..
gi 568936279 689 SLDRLLTESKVE 700
Cdd:TIGR02168 926 QLELRLEGLEVR 937
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
908-1302 |
1.04e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.60 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 908 VLDQTKTELEKTTNSVKELERLQHHT-----ETELTETMQKREALENELQNAhgelKSTLRQLQELRDVLQKAQLSLEEK 982
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHErlnglESELAELDEEIERYEEQREQA----RETRDEADEVLEEHEERREELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 983 YTTIKDLTAELRECKMEIEDKKQELIEMDQA---LKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELE 1059
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERleeLEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1060 LKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQE---DYIATQYKEVIDLGQE 1136
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRerfGDAPVDLGNAEDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1137 LRLTQEQMQNTHSELVEARRQEVQAQREIERL--AG-------ELED--IKQLSKEKEAHGNRLAEELGASQVREAHLEA 1205
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEAEALleAGkcpecgqPVEGspHVETIEEDRERVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1206 RMQA--EIKKLSSEVDSLKEAYQI--EMISHQENhakwklSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDR 1281
Cdd:PRK02224 497 RLERaeDLVEAEDRIERLEERREDleELIAERRE------TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEA 570
|
410 420
....*....|....*....|.
gi 568936279 1282 NEVIEAANEALLIKESELTRL 1302
Cdd:PRK02224 571 REEVAELNSKLAELKERIESL 591
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
585-1168 |
1.17e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 585 EKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLEsnintehekicfafekakkihlEQHKEMEKQIEQLETQLEKRDQ 664
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELE----------------------AELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 665 QFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEaLKALQIHVSEETIKVRQLDSALEICKEELALHL 744
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 745 NQLERNKEKFERQLKKKSEEVY-CLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEK--QV 821
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEeLAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEeeEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 822 SKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKME-KEIIHLKRDGENKSM 900
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 901 QLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLqkAQLSLE 980
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL--ARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 981 EKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRA--AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSEL 1058
Cdd:COG1196 599 AAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAgrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1059 ELKEcnKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELR 1138
Cdd:COG1196 679 AELE--ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580 590
....*....|....*....|....*....|
gi 568936279 1139 LTQEQMQnthselvEARRQEVQAQREIERL 1168
Cdd:COG1196 757 PEPPDLE-------ELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
810-1175 |
1.35e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 810 LEDTQSKLEKQVSKqeqeLQKQRESsTEKLRKMEEKYETAIREVdlkrqkiieLTGTARQAKLEMDQYKEELSKMEKEII 889
Cdd:TIGR02168 191 LEDILNELERQLKS----LERQAEK-AERYKELKAELRELELAL---------LVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 890 HLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELR 969
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 970 DVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREhrgemeqkiikL 1049
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER-----------L 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1050 EGTLEKSELELKECNKQVESLNEKLQNAkeQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKE 1129
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 568936279 1130 VIDLGQELRLTQEQMQNtHSELVEARRQEVQAQREIERLAGELEDI 1175
Cdd:TIGR02168 484 LAQLQARLDSLERLQEN-LEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
634-1316 |
8.26e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 8.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 634 FEKAKKIHLEQHKEMEKQIEQLETQLE-KRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEmekENMKKDEAL 712
Cdd:PTZ00121 1100 AEEAKKTETGKAEEARKAEEAKKKAEDaRKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE---EARKAEDAK 1176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 713 KALQIHVSEETIKVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKikthnleetSEQNAILQHT 792
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK---------DAEEAKKAEE 1247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 793 LQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRE-SSTEKLRKMEE--KYETAIREVDLKRqKIIELTGTARQ 869
Cdd:PTZ00121 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkKKADEAKKAEEkkKADEAKKKAEEAK-KADEAKKKAEE 1326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 870 AKLEMDQYKE--ELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREAL 947
Cdd:PTZ00121 1327 AKKKADAAKKkaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 948 ENELQNAHGELKST---------LRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEiEDKKQELIEMDQALKERN 1018
Cdd:PTZ00121 1407 ADELKKAAAAKKKAdeakkkaeeKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE-EAKKADEAKKKAEEAKKA 1485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1019 WELKQRAAQVTHLDMTIREHRGEMEQ--KIIKLEGTLEKSELELKECNKQVESLN--EKLQNAKEQLREKEFIMLQNEQE 1094
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKadEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKK 1565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1095 ISQLKKEIER---TQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGE 1171
Cdd:PTZ00121 1566 AEEAKKAEEDknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1172 LEDIKQLSKEKEAHGNRLAEEL-GASQVREAHLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSV 1250
Cdd:PTZ00121 1646 KKKAEELKKAEEENKIKAAEEAkKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568936279 1251 QQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGHEKTEDTK 1316
Cdd:PTZ00121 1726 EENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
957-1304 |
1.51e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 957 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAElRECKMEIEDKKQELIEMDQALKERNWE--LKQRAAQVTHLDmT 1034
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE-REKAERYQALLKEKREYEGYELLKEKEalERQKEAIERQLA-S 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1035 IREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNA-KEQLREKEfimlqneQEISQLKKEIERTQQRMKEME 1113
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELE-------AEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1114 SVIKEQEdyiatqykevidlgQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEEL 1193
Cdd:TIGR02169 322 ERLAKLE--------------AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1194 GASQVREAHLearmQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKlSAESQKTSVQQ----LNEQLEKAKQELEEAQD 1269
Cdd:TIGR02169 388 KDYREKLEKL----KREINELKRELDRLQEELQRLSEELADLNAAIA-GIEAKINELEEekedKALEIKKQEWKLEQLAA 462
|
330 340 350
....*....|....*....|....*....|....*
gi 568936279 1270 TVSNLHQQVQDRNEVIEAANEALLIKESELTRLQA 1304
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
174-925 |
1.57e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 1.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 174 LEEQIINLEAEVSAQDkvLREAEDKLEQSQKMVIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRN-EALYNAEELS 252
Cdd:PTZ00121 1111 AEEARKAEEAKKKAED--ARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKaEAARKAEEVR 1188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 253 KAFQLYKEKVAEKLEKVQDEEEILERNLSNCEKENKRLQekcnlyksELEILKEKFRELKEEHYSGKEKLMIMAMKNSEV 332
Cdd:PTZ00121 1189 KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE--------AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 333 MSQLTESRQCILKLErELEDKDEIVR--EKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIPLKRE 410
Cdd:PTZ00121 1261 RMAHFARRQAAIKAE-EARKADELKKaeEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE 1339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 411 IVGFRSSLCKHQRSSVSDKEDKCIGCCEANKLMISELRIKlaiREAEIQKLHANLTVNQLSQNVANDSQECGKVNTLETE 490
Cdd:PTZ00121 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK---ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 491 PVKL--GGSQVESIKDGDQQTVNKQYEREKQRLATGIEELRakltqiEAENSDLKVNMAHRTSQFQLIQEElLEKASNAS 568
Cdd:PTZ00121 1417 KKKAdeAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK------KAEEAKKKAEEAKKADEAKKKAEE-AKKADEAK 1489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 569 KLENEMTKKCSQlliLEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKIcfafEKAKKIHLEQHKEM 648
Cdd:PTZ00121 1490 KKAEEAKKKADE---AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA----DELKKAEELKKAEE 1562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 649 EKQIEQLETQLEKRDQQFKEQEKTMSILQQdilckqhhlesldRLLTESKVEMEKENMKKDEALKAlqihvSEETIKVRQ 728
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEA-------------RIEEVMKLYEEEKKMKAEEAKKA-----EEAKIKAEE 1624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 729 LDSALEICKEELALhlnqlernkEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNG 808
Cdd:PTZ00121 1625 LKKAEEEKKKVEQL---------KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 809 ELEDTQSKLEKQVSKQEQELQKqressTEKLRKMEEkyETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEI 888
Cdd:PTZ00121 1696 KEAEEAKKAEELKKKEAEEKKK-----AEELKKAEE--ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
|
730 740 750
....*....|....*....|....*....|....*..
gi 568936279 889 IHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKE 925
Cdd:PTZ00121 1769 KAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFD 1805
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
985-1299 |
2.10e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.63 E-value: 2.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 985 TIKDLTAELRECKMEIEDKKQEL---------IEMDQALkernwELKQRAA---QVTHLDMTIREH---RGEMEQKIIKL 1049
Cdd:COG4913 156 DIRALKARLKKQGVEFFDSFSAYlarlrrrlgIGSEKAL-----RLLHKTQsfkPIGDLDDFVREYmleEPDTFEAADAL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1050 EG---TLEKSELELKECNKQVESL------NEKLQNAKEQLREKEFIM-----LQNEQEISQLKKEIERTQQRMKEmesv 1115
Cdd:COG4913 231 VEhfdDLERAHEALEDAREQIELLepirelAERYAAARERLAELEYLRaalrlWFAQRRLELLEAELEELRAELAR---- 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1116 ikeqedyiatqykevidLGQELRLTQEQMQNTHSELVEARRQEVQAQ-REIERLAGELEDIKQLSKEKEAHGNRLAEelg 1194
Cdd:COG4913 307 -----------------LEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEA--- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1195 asQVREAHLEA-RMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKlsaesqkTSVQQLNEQLEKAKQELEEAQDTVSN 1273
Cdd:COG4913 367 --LLAALGLPLpASAEEFAALRAEAAALLEALEEELEALEEALAEAE-------AALRDLRRELRELEAEIASLERRKSN 437
|
330 340
....*....|....*....|....*.
gi 568936279 1274 LHQQVQdrnEVIEAANEALLIKESEL 1299
Cdd:COG4913 438 IPARLL---ALRDALAEALGLDEAEL 460
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
498-1121 |
2.44e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.06 E-value: 2.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 498 QVESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKAS----NASKLENE 573
Cdd:pfam15921 246 QLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSmymrQLSDLEST 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 574 MTKKCSQLLILEKQLEEKIIAYS-SIAAKNAELEQELMEKNEkIRSLESNINTEHEKICFAFEKAKKiHLEQHKEMEKQ- 651
Cdd:pfam15921 326 VSQLRSELREAKRMYEDKIEELEkQLVLANSELTEARTERDQ-FSQESGNLDDQLQKLLADLHKREK-ELSLEKEQNKRl 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 652 ----------IEQLETQLEKRDQQFKEQEKTMSILQQD-----------ILCKQHHLESLDRLLT--ESKVEMEK----E 704
Cdd:pfam15921 404 wdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSEcqgqmerqmaaIQGKNESLEKVSSLTAqlESTKEMLRkvveE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 705 NMKKDEALKALQIHVSEETIKVRQLDSALEICKEELALHLNQLERNKEKFErQLKKKSEEVYCLQKELKIKTHNLEETSE 784
Cdd:pfam15921 484 LTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 785 QNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEkYETAIREVDLKRQKII--- 861
Cdd:pfam15921 563 VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRE-LEARVSDLELEKVKLVnag 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 862 -ELTGTARQAKLEMDQY-------KEELSKMEKEIIHLKRDGENKSMQL----SQLDMVLDQTKTELEKTTNSVKELERL 929
Cdd:pfam15921 642 sERLRAVKDIKQERDQLlnevktsRNELNSLSEDYEVLKRNFRNKSEEMetttNKLKMQLKSAQSELEQTRNTLKSMEGS 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 930 QHHTeTELTETMQKREALENELQNAhgeLKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIE 1009
Cdd:pfam15921 722 DGHA-MKVAMGMQKQITAKRGQIDA---LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRS 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1010 MDQALKER--NWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELE---------LKECNKQVESLNEKLQNAK 1078
Cdd:pfam15921 798 QERRLKEKvaNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQgpgytsnssMKPRLLQPASFTRTHSNVP 877
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 568936279 1079 EQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQED 1121
Cdd:pfam15921 878 SSQSTASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPT 920
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
819-1311 |
4.12e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 4.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 819 KQVSKQEQELQKqresSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENK 898
Cdd:TIGR04523 117 EQKNKLEVELNK----LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 899 SMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHT---ETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKA 975
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNnqlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 976 QLSLEEKYTTIKDLTAELRECKMEIEDKKQE--------------------------LIEMDQALKERNWELKQRAAQVT 1029
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwnkelkselknqekkleeiqnqISQNNKIISQLNEQISQLKKELT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1030 HLDMTIREHRGEMEQK---IIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQ 1106
Cdd:TIGR04523 353 NSESENSEKQRELEEKqneIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1107 QRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHG 1186
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1187 NRLAEELGASQVREAHLEarmqAEIKKLSSEVDSLKEayqiemishQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEE 1266
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLE----SEKKEKESKISDLED---------ELNKDDFELKKENLEKEIDEKNKEIEELKQTQKS 579
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 568936279 1267 AQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGHEK 1311
Cdd:TIGR04523 580 LKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1095-1314 |
5.44e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 5.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1095 ISQLKKEIERTQQRMKEMES-------VIKEQEDYI---------ATQYKEVID---------LGQELRLTQEQMQNTHS 1149
Cdd:COG1196 167 ISKYKERKEEAERKLEATEEnlerledILGELERQLeplerqaekAERYRELKEelkeleaelLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1150 ELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLSSEVDSLKEAyQIEM 1229
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1230 ISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGH 1309
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
....*
gi 568936279 1310 EKTED 1314
Cdd:COG1196 406 EEAEE 410
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
936-1314 |
6.49e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.55 E-value: 6.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 936 ELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTTIKDLTAELRECKMEIEDKKQELiemdQA 1013
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERL----EE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1014 LKERNWELKQRAAQVTHLDMTIREHRGEMEQKiikLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQ 1093
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEEL---LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1094 EISQLKKEIERTQQR----------------------MKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSEL 1151
Cdd:COG4717 228 ELEQLENELEAAALEerlkearlllliaaallallglGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1152 VEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLEArmQAEIKKLSSEVDSLKEAYQIEMIS 1231
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLEELEQEIAALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1232 HQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVS--NLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGH 1309
Cdd:COG4717 386 ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
....*
gi 568936279 1310 EKTED 1314
Cdd:COG4717 466 EEDGE 470
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
806-1306 |
6.99e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 6.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 806 RNGELEDTQSKLEKQVSKQEQELQKQR-ESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEmdqykeELSKM 884
Cdd:COG4913 270 RLAELEYLRAALRLWFAQRRLELLEAElEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD------RLEQL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 885 EKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEkttNSVKELERLQHHTETELTETMQKREALEN---ELQNAHGELKST 961
Cdd:COG4913 344 EREIERLERELEERERRRARLEALLAALGLPLP---ASAEEFAALRAEAAALLEALEEELEALEEalaEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 962 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAElrECKMEIEDKK--QELIEMDQalKERNWEL----------------KQ 1023
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAE--ALGLDEAELPfvGELIEVRP--EEERWRGaiervlggfaltllvpPE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1024 RAAQV------THLDMTIREHR-------------------GEMEQKIIKLEGTLEK------------SELELKECN-- 1064
Cdd:COG4913 497 HYAAAlrwvnrLHLRGRLVYERvrtglpdperprldpdslaGKLDFKPHPFRAWLEAelgrrfdyvcvdSPEELRRHPra 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1065 -------KQVESLNEKlqNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIAtQYKEVIDLGQEL 1137
Cdd:COG4913 577 itragqvKGNGTRHEK--DDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELD-ALQERREALQRL 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1138 RLTQEQMQNTHSelVEARRQEVQAQRE-IERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLE---ARMQAEIKK 1213
Cdd:COG4913 654 AEYSWDEIDVAS--AEREIAELEAELErLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEkelEQAEEELDE 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1214 LSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQ--------VQDRNEVI 1285
Cdd:COG4913 732 LQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAfnrewpaeTADLDADL 811
|
570 580
....*....|....*....|....*
gi 568936279 1286 EAANE--ALL--IKESELTRLQAKI 1306
Cdd:COG4913 812 ESLPEylALLdrLEEDGLPEYEERF 836
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
688-1223 |
7.30e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.46 E-value: 7.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 688 ESLDRLLTESKVEMEkENMKKDEALKALQIHVSEETIKVRQLDSALEICKEELalhlNQLERNKEKFERQLKKKSEEVYC 767
Cdd:PRK03918 189 ENIEELIKEKEKELE-EVLREINEISSELPELREELEKLEKEVKELEELKEEI----EELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 768 LQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNgELEDTQSKLEKQVSKQEQELQ------KQRESSTEKLRK 841
Cdd:PRK03918 264 LEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINgieeriKELEEKEERLEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 842 MEEKYETAIREVDlKRQKIIELTGTARQAKLEMDQYKEELS-----KMEKEIIHLKRDGENKSMQLSQLDMV---LDQTK 913
Cdd:PRK03918 343 LKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISKITARigeLKKEI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 914 TELEKTTNSVKELERLQHHTETELTETMQKR--EALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKdlta 991
Cdd:PRK03918 422 KELKKAIEELKKAKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK---- 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 992 eLRECKMEIEDKKQELIEMDQALKERNWELKQraaqvthldmTIREHRGEMEQKIIKLEGTLEKSEL---ELKECNKQVE 1068
Cdd:PRK03918 498 -LKELAEQLKELEEKLKKYNLEELEKKAEEYE----------KLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1069 SLNEKLQNAKEQLREKEFimlqneqeisqlkKEIERTQQRMKEMESVIKEqedyiatqYKEVIDLGQELRLTQEQMQNTH 1148
Cdd:PRK03918 567 ELEEELAELLKELEELGF-------------ESVEELEERLKELEPFYNE--------YLELKDAEKELEREEKELKKLE 625
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568936279 1149 SELVEARRQEVQAQREIERLAGELEDIKQLSKEKEahgnrlAEELGASQVREAHLEARMQAEIKKLSSEVDSLKE 1223
Cdd:PRK03918 626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEE------YEELREEYLELSRELAGLRAELEELEKRREEIKK 694
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
819-1017 |
1.07e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.07 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 819 KQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENK 898
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 899 SMQLSQLDMVLDQtkTELEKTTNSVKELERLQHHTETELTETMQKREALENELQnahgELKSTLRQLQELRDVLQKAQLS 978
Cdd:COG3883 99 GGSVSYLDVLLGS--ESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKA----ELEAKLAELEALKAELEAAKAE 172
|
170 180 190
....*....|....*....|....*....|....*....
gi 568936279 979 LEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKER 1017
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
809-1028 |
1.10e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 809 ELEDTQSKLeKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEI 888
Cdd:COG4942 28 ELEQLQQEI-AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 889 IHLKRDGEnKSMQLSQLDMVLDQTK-TELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQE 967
Cdd:COG4942 107 AELLRALY-RLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568936279 968 LRDVLQKAQlslEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQV 1028
Cdd:COG4942 186 ERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
933-1138 |
1.58e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 933 TETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQ 1012
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1013 ALKERNWELkQRAAQVTHLDMTIR-EHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQN 1091
Cdd:COG4942 105 ELAELLRAL-YRLGRQPPLALLLSpEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568936279 1092 EQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELR 1138
Cdd:COG4942 184 EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
558-1301 |
1.70e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 558 EELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKA 637
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIES 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 638 KKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQI 717
Cdd:pfam02463 256 SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 718 HVSEE-------TIKVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQ 790
Cdd:pfam02463 336 EIEELekelkelEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 791 HTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLR--KMEEKYETAIREVDLKRQKIIELTGTAR 868
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELelKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 869 QAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKE-----------LERLQHHTETEL 937
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEvsatadeveerQKLVRALTELPL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 938 TETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKER 1017
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1018 NWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQ 1097
Cdd:pfam02463 656 EGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1098 LKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQ 1177
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1178 LSKEKEAHGNRLAEELGASQVREaHLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQL 1257
Cdd:pfam02463 816 LLEEEQLLIEQEEKIKEEELEEL-ALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK 894
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 568936279 1258 EKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTR 1301
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE 938
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1084-1303 |
2.01e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 58.87 E-value: 2.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1084 KEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIAtQYKE---VIDLGQELRLTQEQMQNTHSELVEARRQEVQ 1160
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALE-EFRQkngLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1161 AQREIERLAGELEDIKQLSKEKEAHG--NRLAEELGASQVREAHLEARMQAE---IKKLSSEVDSLKEAYQIEMishqen 1235
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYTPNhpdVIALRAQIAALRAQLQQEA------ 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568936279 1236 hAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALlikESELTRLQ 1303
Cdd:COG3206 312 -QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY---ESLLQRLE 375
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1036-1328 |
2.73e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1036 REHRGEMEQKIIKLEGTLEKSELELKECNKQVESLN------EKLQNAKEQLREKEFIMLQNEqeISQLKKEIERTQQRM 1109
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLErqaekaERYKELKAELRELELALLVLR--LEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1110 KEMEsvikeqedyiatqykevidlgQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRL 1189
Cdd:TIGR02168 249 KEAE---------------------EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1190 AEELGASQVREAHLEARMQAEIKKLSSEVDSLKE-AYQIEMIshQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQ 1268
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAElEEKLEEL--KEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1269 DTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGHEKTEDTKYLPAPFTTLTEI 1328
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
810-1189 |
3.85e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 3.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 810 LEDTQSKLEKQVSKQEQELQKQRESSTEKLRKME---EKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEK 886
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAEslrEDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 887 EIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREA----------LENELQNAHG 956
Cdd:PRK02224 392 EIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 957 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLtaelRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIR 1036
Cdd:PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERAEDL----VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1037 EHRGEMEQKiiklEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEqEISQLKKEIERTQQRMKEMESVI 1116
Cdd:PRK02224 548 ELEAEAEEK----REAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA-AIADAEDEIERLREKREALAELN 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1117 KEQEDYIATQYKEVIDLGQEL---RLTQEQ---------MQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEA 1184
Cdd:PRK02224 623 DERRERLAEKRERKRELEAEFdeaRIEEARedkeraeeyLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA 702
|
....*
gi 568936279 1185 HGNRL 1189
Cdd:PRK02224 703 LENRV 707
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
879-1266 |
4.12e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 4.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 879 EELSKMEKEIIHLKrDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGEL 958
Cdd:PRK03918 145 ESREKVVRQILGLD-DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 959 KSTLRQLQELRdvlqkaqlSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDmtireh 1038
Cdd:PRK03918 224 EKLEKEVKELE--------ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK------ 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1039 rgEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEfimlQNEQEISQLKKEIERTQQRMKEMESVIKE 1118
Cdd:PRK03918 290 --EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEERHEL 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1119 QEDyiATQYKEVIDlGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQV 1198
Cdd:PRK03918 364 YEE--AKAKKEELE-RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568936279 1199 --------REAHLEARMQAEIKKLSSEVDSLKEayQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEE 1266
Cdd:PRK03918 441 cgrelteeHRKELLEEYTAELKRIEKELKEIEE--KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
112-661 |
4.15e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 4.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 112 MDQEVKNLREKLHKLRQQNACLVTQNHSLMTKIESVHFELTQSKAKIAMLESAQEQA-ANIPILEEQIINLEAEVSAQDK 190
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELeEELAELEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 191 VLREAEDKLEQSQKMVIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQLYKEKVAEKLEKVQ 270
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 271 DEEEILERNLSNCEKENKRLQEKcnlyKSELEILKEKFRELKEEHYSGKEKLMIMAMKNSEVMSQLTESRQ---CILKLE 347
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEA----AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAArllLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 348 RELEDKDEIVREKFSLLNENR-----------ELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIPLKReiVGFRS 416
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGlagavavligvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR--ATFLP 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 417 SLCKHQRSSVSDKEDKCIGCCEANklMISELRIKLAIREAEIQKLHANLTVNQLSQNVANDSQECGKVNTLETEPVKLGG 496
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVD--LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 497 SQVESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTK 576
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 577 KCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLES-NINTEHEkicfaFEKAKkihlEQHKEMEKQIEQL 655
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvNLLAIEE-----YEELE----ERYDFLSEQREDL 807
|
....*.
gi 568936279 656 ETQLEK 661
Cdd:COG1196 808 EEARET 813
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1043-1226 |
4.65e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 4.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1043 EQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDY 1122
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1123 IATQYKEVIDLGQ----ELRLTQEQMQNT------HSELVEARRQEVQA-QREIERLAGELEDIKQLSKEKEAHGNRLAE 1191
Cdd:COG4942 106 LAELLRALYRLGRqpplALLLSPEDFLDAvrrlqyLKYLAPARREQAEElRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190
....*....|....*....|....*....|....*...
gi 568936279 1192 E---LGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQ 1226
Cdd:COG4942 186 EraaLEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
832-1223 |
5.05e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.74 E-value: 5.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 832 RESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLsqldmvlDQ 911
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV-------ED 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 912 TKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEE---------- 981
Cdd:PRK02224 382 RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpv 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 982 KYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDmTIREHRGEMEQKIIKLEGTLEKSELELK 1061
Cdd:PRK02224 462 EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRERAE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1062 ECNKQVESLNEKLQNAKEQLREKEfimlQNEQEISQLKKEIERTQQRMKEMesviKEQEDYIATQYKEVIDLGQELRLTQ 1141
Cdd:PRK02224 541 ELRERAAELEAEAEEKREAAAEAE----EEAEEAREEVAELNSKLAELKER----IESLERIRTLLAAIADAEDEIERLR 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1142 EQMQNThSELVEARRQEVQAQRE-IERLAGE-----LEDIKQLSKEKEAHGNRLAEELgaSQVREAhlEARMQAEIKKLS 1215
Cdd:PRK02224 613 EKREAL-AELNDERRERLAEKRErKRELEAEfdearIEEAREDKERAEEYLEQVEEKL--DELREE--RDDLQAEIGAVE 687
|
....*...
gi 568936279 1216 SEVDSLKE 1223
Cdd:PRK02224 688 NELEELEE 695
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
519-1183 |
5.98e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.42 E-value: 5.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 519 QRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSS- 597
Cdd:pfam05483 123 QELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEEl 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 598 -IAAKNAELEQ--ELMEKNEKIRSLESnintEHEKICFAFEKAKKIHLEQHKEMEKQIEQLETQLEK---RDQQFKEQEK 671
Cdd:pfam05483 203 rVQAENARLEMhfKLKEDHEKIQHLEE----EYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEEsrdKANQLEEKTK 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 672 TMSILQQDILCKQHHLESLdrlLTESKVEMEKENMKKDEALKALQIHVSEETIKVRQLDSALEICKEELALH---LNQLE 748
Cdd:pfam05483 279 LQDENLKELIEKKDHLTKE---LEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHsfvVTEFE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 749 RNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQnaILQHTLQQQQQMLQQETMRNGELEDTQSKLE-KQVSKQEQE 827
Cdd:pfam05483 356 ATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSE--LEEMTKFKNNKEVELEELKKILAEDEKLLDEkKQFEKIAEE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 828 LQKQRESSTEKLRKMEEkyETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDM 907
Cdd:pfam05483 434 LKGKEQELIFLLQAREK--EIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDM 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 908 VLdQTKTELEKTTNSVKELERLQHHTETELTETMQKREALE---NELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYT 984
Cdd:pfam05483 512 TL-ELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELEsvrEEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMK 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 985 TIKDLTAELREckmEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECN 1064
Cdd:pfam05483 591 ILENKCNNLKK---QIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKK 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1065 KQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQE-Q 1143
Cdd:pfam05483 668 ISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEiE 747
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568936279 1144 MQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKE 1183
Cdd:pfam05483 748 LSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
936-1129 |
7.03e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 7.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 936 ELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALK 1015
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1016 ERNWELKQR---------------------AAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKL 1074
Cdd:COG4942 101 AQKEELAELlralyrlgrqpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568936279 1075 QNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKE 1129
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
863-1085 |
7.74e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 7.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 863 LTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQ 942
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 943 KREALENELQNAHGELKSTLRQLQELRD-------VLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALK 1015
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1016 ERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKE 1085
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1035-1224 |
8.45e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 8.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1035 IREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEM-- 1112
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELlr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1113 ----------ESVIKEQED---------YIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELE 1173
Cdd:COG4942 112 alyrlgrqppLALLLSPEDfldavrrlqYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568936279 1174 dikQLSKEKEAHGNRLAEELGASQVREAHL---EARMQAEIKKLSSEVDSLKEA 1224
Cdd:COG4942 192 ---ALKAERQKLLARLEKELAELAAELAELqqeAEELEALIARLEAEAAAAAER 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
113-661 |
1.96e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 113 DQEVKNLREKLHKLRQQNACLVTQNHSLMTKIESVH-------FELTQSKAKIAMLESAQEQAAN-IPILEEQIINLEAE 184
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRleleeleLELEEAQAEEYELLAELARLEQdIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 185 VSAQDKVLREAEDKLEQSQKMVIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALynaEELSKAFQLYKEKVAE 264
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE---EELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 265 KLEKVQDEEEiLERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMIMAMKNSEVMSQLTESRQCIL 344
Cdd:COG1196 395 AAELAAQLEE-LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 345 KLERELEDKDEIVREKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIPLKREIVGFRSSLCKHQRS 424
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 425 SVSDKEDKCIGCCEANKLMISELRIKLAIREAEI-QKLHANLTVNQLSQNVANDSQECGKVNTLETEPVKLGGSQVESIK 503
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAlAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 504 DGDQQTVNKQYEREKQRLATGIEELRAKLTQIEAENsdlkvnmahRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLI 583
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE---------LLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568936279 584 LEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESnintEHEKICFAFEKAKKIHLEQHKEMEKQIEQLETQLEK 661
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELL----EEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
985-1220 |
2.64e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 985 TIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVthldmtirehrGEMEQKIIKLEGTLEKSELELKECN 1064
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-----------AALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1065 KQVESLNEKLQNAKEQLREKEFIMLQNEQEI-------SQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQEL 1137
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1138 RLTQEQMQNTHSELVEARRQEVQAQREIERLageledIKQLSKEKEAHGNRLAeELGASQVREAHLEARMQAEIKKLSSE 1217
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKL------LARLEKELAELAAELA-ELQQEAEELEALIARLEAEAAAAAER 242
|
...
gi 568936279 1218 VDS 1220
Cdd:COG4942 243 TPA 245
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
646-1227 |
3.08e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 3.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 646 KEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETIK 725
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 726 VRQldsaleicKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQ-----NAILQHTLQQQQQML 800
Cdd:TIGR04523 116 KEQ--------KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQkeeleNELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 801 QQETMRNGELED--------TQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKL 872
Cdd:TIGR04523 188 NIDKIKNKLLKLelllsnlkKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 873 EMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQT-----KTELEKTTNSVKELERLQHHTETELTETMQKREAL 947
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwnkelKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 948 ENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQ 1027
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1028 VTHLDMTIREHRGEM----------EQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQ 1097
Cdd:TIGR04523 428 IERLKETIIKNNSEIkdltnqdsvkELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1098 LKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQE--VQAQREIERLAGELEDI 1175
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKeiEELKQTQKSLKKKQEEK 587
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 568936279 1176 KQLSKEKEAHGNRLAEELGASQVREAHLEARM---QAEIKKLSSEVDSLKEAYQI 1227
Cdd:TIGR04523 588 QELIDQKEKEKKDLIKEIEEKEKKISSLEKELekaKKENEKLSSIIKNIKSKKNK 642
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
944-1210 |
3.14e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 944 REALEN--ELQNAHGELKSTLRQLQELRDVLQKAQlsleekyttikdltaelreckmEIEDKKQELIEMDQALKERNWEL 1021
Cdd:COG4913 228 DALVEHfdDLERAHEALEDAREQIELLEPIRELAE----------------------RYAAARERLAELEYLRAALRLWF 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1022 KQRAAQvthldmtirehrgEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREkefimlQNEQEISQLKKE 1101
Cdd:COG4913 286 AQRRLE-------------LLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG------NGGDRLEQLERE 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1102 IERTQQRMKEMESVIKEQEDYIAT----------QYKEVIDLGQELRLT-QEQMQNTHSELVEARRQEVQAQREIERLAG 1170
Cdd:COG4913 347 IERLERELEERERRRARLEALLAAlglplpasaeEFAALRAEAAALLEAlEEELEALEEALAEAEAALRDLRRELRELEA 426
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 568936279 1171 ELEDIKQ----LSKEKEAHGNRLAEELGAS-----------QVREAHLEARMQAE 1210
Cdd:COG4913 427 EIASLERrksnIPARLLALRDALAEALGLDeaelpfvgeliEVRPEEERWRGAIE 481
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
259-1124 |
4.32e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.98 E-value: 4.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 259 KEKVAEKLEKVQDEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMIMAMKNSEvmSQLTE 338
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ--ELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 339 SRQCILKLERELEDKDEIVREKfslLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQipLKREIVGFRSSL 418
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQV---LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD--DEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 419 CKHQRSSVSDKEDKcigccEANKLMISELRIKLAIREAEIQKLHANLTVNQLSQNVANDSQECGKVNTLETEPVKlggSQ 498
Cdd:pfam02463 324 KKAEKELKKEKEEI-----EELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK---EE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 499 VESIKDGDQQTVNKQYEREKQRLatgIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKC 578
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLE---DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 579 SQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHK-EMEKQIEQLET 657
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENyKVAISTAVIVE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 658 QLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETIKVRQLDSALEICK 737
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 738 EELALHLNQLERNKEKFERQLKKKSEEVYCLQK----ELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDT 813
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKaslsELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 814 QSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIH--- 890
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEeek 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 891 ---LKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNahgELKSTLRQLQE 967
Cdd:pfam02463 793 eekLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER---LEEEITKEELL 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 968 LRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKII 1047
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKE 949
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568936279 1048 KLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIA 1124
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELF 1026
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
943-1126 |
5.00e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 53.68 E-value: 5.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 943 KREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELK 1022
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1023 QRAAQVTHLDM------------------TIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREK 1084
Cdd:COG3883 97 RSGGSVSYLDVllgsesfsdfldrlsalsKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568936279 1085 efiMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQ 1126
Cdd:COG3883 177 ---QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
909-1100 |
5.54e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 909 LDQTKTELEKTTNSVKELERLQHHTET--ELTETMQKREALENELQNAHGELKSTL--RQLQELRDVLQKAQLSLEEKYT 984
Cdd:COG4913 237 LERAHEALEDAREQIELLEPIRELAERyaAARERLAELEYLRAALRLWFAQRRLELleAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 985 TIKDLTAELRECKM--------EIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKS 1056
Cdd:COG4913 317 RLDALREELDELEAqirgnggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEAL 396
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568936279 1057 ELELKECNKQVESLNEKLQNAKEQLREKefimlqnEQEISQLKK 1100
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELREL-------EAEIASLER 433
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1048-1212 |
5.60e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 54.01 E-value: 5.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1048 KLEGTLEKSELELKECNKQVESLN-EKLQNAKEQLREKEfimLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQ 1126
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKkEALLEAKEEIHKLR---NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1127 YKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQaqreierlagELEDIKQLSKEkEAHgNRLAEEL-------GASQVR 1199
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQ----------ELERISGLTAE-EAK-EILLEKVeeearheAAVLIK 176
|
170
....*....|...
gi 568936279 1200 EAHLEARMQAEIK 1212
Cdd:PRK12704 177 EIEEEAKEEADKK 189
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
507-1286 |
5.76e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.67 E-value: 5.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 507 QQTVNKQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEmtkkcSQLLILEK 586
Cdd:TIGR00606 310 HQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATR-----LELDGFER 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 587 QleekiiAYSSIAAKNA-ELEQELMEknEKIRSLESNINTEHEKICFAFEKAKKIHLEQhKEMEKQIEQLETQLEKRDQQ 665
Cdd:TIGR00606 385 G------PFSERQIKNFhTLVIERQE--DEAKTAAQLCADLQSKERLKQEQADEIRDEK-KGLGRTIELKKEILEKKQEE 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 666 FKEQEKTMsilqQDILCKQHHLESLDRLLTESKVEMEK-ENMKKDEALKAlqihvSEETIKVRQLDSALEICKEelALHL 744
Cdd:TIGR00606 456 LKFVIKEL----QQLEGSSDRILELDQELRKAERELSKaEKNSLTETLKK-----EVKSLQNEKADLDRKLRKL--DQEM 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 745 NQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNgELEDTQSKLEKQVSKQ 824
Cdd:TIGR00606 525 EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEIN-QTRDRLAKLNKELASL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 825 EQ---ELQKQRESSTEKLRKMEEKYETAI----REVDLKRQKIIELTGTARQAKLE-----MDQYKEELSKMEKEIIHL- 891
Cdd:TIGR00606 604 EQnknHINNELESKEEQLSSYEDKLFDVCgsqdEESDLERLKEEIEKSSKQRAMLAgatavYSQFITQLTDENQSCCPVc 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 892 KRDGENKSmqlsQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDV 971
Cdd:TIGR00606 684 QRVFQTEA----ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRD 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 972 LQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK-QELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLE 1050
Cdd:TIGR00606 760 IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELD 839
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1051 GTLEKSELElkecNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEV 1130
Cdd:TIGR00606 840 TVVSKIELN----RKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1131 IDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDI--------KQLSKEKEAHGNRLAEELGASQVREAH 1202
Cdd:TIGR00606 916 TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIenkiqdgkDDYLKQKETELNTVNAQLEECEKHQEK 995
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1203 LEARMQAEIKKLSSEvdSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNE----QLEKAKQELEEAQDTVSNLHQQV 1278
Cdd:TIGR00606 996 INEDMRLMRQDIDTQ--KIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQmqvlQMKQEHQKLEENIDLIKRNHVLA 1073
|
....*...
gi 568936279 1279 QDRNEVIE 1286
Cdd:TIGR00606 1074 LGRQKGYE 1081
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1044-1267 |
8.38e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 8.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1044 QKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYI 1123
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1124 ATQYKEvidLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHL 1203
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568936279 1204 EArMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEA 1267
Cdd:COG4942 177 EA-LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
444-972 |
1.11e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 444 ISELRIKLAIREAEIQKLHANLTVNQLSQNVANDSQEcgkvntletepvKLGGSQVESIKDGDQQtvnkqyEREKQRLAT 523
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELE------------EAQAEEYELLAELARL------EQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 524 GIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNA 603
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 604 ELEQELMEKNEKIRSLESNINTEHEKICfAFEKAKKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCK 683
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLE-RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 684 QHHLESLDRLLTE-------------SKVEMEKENMKKDEALKALQI---------HVSEETIKVRQLDSALEICKEELA 741
Cdd:COG1196 469 LEEAALLEAALAElleelaeaaarllLLLEAEADYEGFLEGVKAALLlaglrglagAVAVLIGVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 742 LHLN--QLERNKEKFERQLKKKSEEVYCLQKElKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSkLEK 819
Cdd:COG1196 549 QNIVveDDEVAAAAIEYLKAAKAGRATFLPLD-KIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-GRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 820 QVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKS 899
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568936279 900 MQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVL 972
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
871-1298 |
1.19e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 53.29 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 871 KLEMDQYKEELSKMEKEIIHLKRDGENKSMQLS---QLDMVLDQTKTELEKTTNSVK-ELERLQHHTETELTETMQKREA 946
Cdd:pfam10174 288 KNKIDQLKQELSKKESELLALQTKLETLTNQNSdckQHIEVLKESLTAKEQRAAILQtEVDALRLRLEEKESFLNKKTKQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 947 LEnELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKyttIKDLTAELReckmeieDKKQELIEmdqaLKERNWELKQRAA 1026
Cdd:pfam10174 368 LQ-DLTEEKSTLAGEIRDLKDMLDVKERKINVLQKK---IENLQEQLR-------DKDKQLAG----LKERVKSLQTDSS 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1027 QVTHLDMTIREHRGEMEQKIIKLEgtlEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQ 1106
Cdd:pfam10174 433 NTDTALTTLEEALSEKERIIERLK---EQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1107 QRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQE-------------QMQNTHSELVEARRQEVQAQREIERLAGELE 1173
Cdd:pfam10174 510 SSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNaeeavrtnpeindRIRLLEQEVARYKEESGKAQAEVERLLGILR 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1174 DIKQLSKEKEAHGNRLaEELGASQVREAHlearMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKwklsAESQKTSVQQL 1253
Cdd:pfam10174 590 EVENEKNDKDKKIAEL-ESLTLRQMKEQN----KKVANIKHGQQEMKKKGAQLLEEARRREDNLA----DNSQQLQLEEL 660
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1254 NEQLEKAKQELEEAQDTVSNLHQQVQDRN---------------EVIEAANEALLIKESE 1298
Cdd:pfam10174 661 MGALEKTRQELDATKARLSSTQQSLAEKDghltnlraerrkqleEILEMKQEALLAAISE 720
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
174-964 |
1.19e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 174 LEEQIINLEAEVSAQDKVLREAEDKLEQSQKMVIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAEELSK 253
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 254 AFQLYKEK-------VAEKLEKVQDEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMIMA 326
Cdd:pfam02463 321 KEKKKAEKelkkekeEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 327 MKNSEVMSQLTESRQCILKLERELEDKDEIVREKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIP 406
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLV 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 407 LKREIVGFRSSLCKHQRSSVSDKedKCIGCCEANKLMISELRIKLAIREAEIQKLHANLTVNQLSQNVANDSQECGKVNT 486
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKES--KARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 487 LETEPVKLGGSQVESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASN 566
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 567 ASKLENEMTkkcsqlLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQhk 646
Cdd:pfam02463 639 ESAKAKESG------LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE-- 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 647 emekQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETIKV 726
Cdd:pfam02463 711 ----ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 727 RQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEvyclQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMR 806
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLI----EQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE 862
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 807 NGELEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEK 886
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLL 942
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568936279 887 EIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQ 964
Cdd:pfam02463 943 EEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLK 1020
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
957-1273 |
1.39e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 957 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDqALKERNWELKQRAAQVthldmtiR 1036
Cdd:PRK03918 180 RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE-ELKEEIEELEKELESL-------E 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1037 EHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFiMLQNEQEISQLKKEIERTQQRMKEMESVI 1116
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEF-YEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1117 KEQEDYIAtQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAG-ELEDIKQLSKEKEAHGNRLAEELGA 1195
Cdd:PRK03918 331 KELEEKEE-RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1196 SQVREAHLEARmqaeIKKLSSEVDSLKEAYQI------EMISHQENHAKWKLSAESQKTS--VQQLNEQLEKAKQELEEA 1267
Cdd:PRK03918 410 ITARIGELKKE----IKELKKAIEELKKAKGKcpvcgrELTEEHRKELLEEYTAELKRIEkeLKEIEEKERKLRKELREL 485
|
....*.
gi 568936279 1268 QDTVSN 1273
Cdd:PRK03918 486 EKVLKK 491
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
546-1114 |
1.60e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.87 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 546 MAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINT 625
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 626 EHEKicfafekAKKIHLEQhKEMEKQIEQLETQLEkrDQQFKEQEKTMSILQQDILCKQHHLESLdrLLTESKVEMEKEN 705
Cdd:pfam01576 87 EEER-------SQQLQNEK-KKMQQHIQDLEEQLD--EEEAARQKLQLEKVTTEAKIKKLEEDIL--LLEDQNSKLSKER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 706 MKKDEALKALQIHVSEETIKVR---QLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEET 782
Cdd:pfam01576 155 KLLEERISEFTSNLAEEEEKAKslsKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 783 SEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQK---QRESSTEKLRKMEEKYETairevdLKRQK 859
Cdd:pfam01576 235 RAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraARNKAEKQRRDLGEELEA------LKTEL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 860 IIELTGTARQAKLEmdqykeelSKMEKEIIHLKR--DGENKSMQLSQLDM------VLDQTKTELEKTTNSVKELERLQH 931
Cdd:pfam01576 309 EDTLDTTAAQQELR--------SKREQEVTELKKalEEETRSHEAQLQEMrqkhtqALEELTEQLEQAKRNKANLEKAKQ 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 932 HTETEL--------------TETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECK 997
Cdd:pfam01576 381 ALESENaelqaelrtlqqakQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLS 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 998 MEIEDKKQELIEMDQALKErnwELKQRAAQVTHLDMTIREHRGEMEQkiiklegtLEKSELELKECNKQVESLNEKLQNA 1077
Cdd:pfam01576 461 KDVSSLESQLQDTQELLQE---ETRQKLNLSTRLRQLEDERNSLQEQ--------LEEEEEAKRNVERQLSTLQAQLSDM 529
|
570 580 590
....*....|....*....|....*....|....*..
gi 568936279 1078 KEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:pfam01576 530 KKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAA 566
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
600-1228 |
1.66e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.80 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 600 AKNAELEQELMEKNEKIRSLESNINTEHEKICFAFE----KAKKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSI 675
Cdd:pfam05483 165 ARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEelrvQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 676 LQQDILCKQHHLESLDRLLTESK---VEMEKENMKKDEALKalqihvseetikvrqldsaleickeELALHLNQLERNKE 752
Cdd:pfam05483 245 LLIQITEKENKMKDLTFLLEESRdkaNQLEEKTKLQDENLK-------------------------ELIEKKDHLTKELE 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 753 KFERQLKKKSEEVYCLQKELKIKTHNLEETSEQnaiLQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQr 832
Cdd:pfam05483 300 DIKMSLQRSMSTQKALEEDLQIATKTICQLTEE---KEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKN- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 833 essteklrkmEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKrdgenksmqlsQLDMVLDQT 912
Cdd:pfam05483 376 ----------EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKK-----------QFEKIAEEL 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 913 KTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAE 992
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLE 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 993 LRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNE 1072
Cdd:pfam05483 515 LKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILEN 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1073 KLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIAT---QYKEVIDLGQ-ELRLTQEQMQNTH 1148
Cdd:pfam05483 595 KCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASakqKFEEIIDNYQkEIEDKKISEEKLL 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1149 SELVEAR---RQEVQAQREIE-RLAGELEDIKQLSKEKEAHGNRLAE----ELGASQVRE---AHLEARMQAEIKKLSSE 1217
Cdd:pfam05483 675 EEVEKAKaiaDEAVKLQKEIDkRCQHKIAEMVALMEKHKHQYDKIIEerdsELGLYKNKEqeqSSAKAALEIELSNIKAE 754
|
650
....*....|.
gi 568936279 1218 VDSLKEAYQIE 1228
Cdd:pfam05483 755 LLSLKKQLEIE 765
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
113-405 |
3.70e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 3.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 113 DQEVKNLREKLHKLRQQNACLVTQNHSLMTKIESVHFELTQSKAKIAMLESAQ-EQAANIPILEEQIINLEAEVSAQDKV 191
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 192 LREAEDKLEQSQKMVIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQlykeKVAEKLEKVQD 271
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA----NLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 272 EEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMIMAMKNSEVMSQLTESRQCILKLE---R 348
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELEskrS 911
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568936279 349 ELEDKDEIVREKFSLLNENRE-LKVRVATQNERL---------------ELCQQDIDNSRVELKSLEKLITQI 405
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEgLEVRIDNLQERLseeysltleeaealeNKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
166-1074 |
4.03e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 166 EQAANIPILEEQIINLEAEVSAQDKVLREAEDKLEQSQkmviekehslqeakEECIKLKVDLLEQSKQGKRAERQRNEAL 245
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEET--------------ENLAELIIDLEELKLQELKLKEQAKKAL 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 246 YNAEELSKAFQLY-KEKVAEKLEKVQDEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMI 324
Cdd:pfam02463 211 EYYQLKEKLELEEeYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 325 MAMKNSEVMSQLTESRQCILKLERELEDKDEIVREKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLitq 404
Cdd:pfam02463 291 LAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEK--- 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 405 ipLKREIVGFRSSLCKHQRSSVSDKEDKCIgccEANKLMISELRIKLAIREAEIQKLHANLTVNQLSQNVAndsqECGKV 484
Cdd:pfam02463 368 --LEQLEEELLAKKKLESERLSSAAKLKEE---ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE----EEEES 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 485 NTLETEPVKLGGSQVESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKA 564
Cdd:pfam02463 439 IELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKD 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 565 SNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQ 644
Cdd:pfam02463 519 GVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 645 HKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETI 724
Cdd:pfam02463 599 IDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEI 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 725 KVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEvyclqkelKIKTHNLEETSEQNAILQHTLQQQQQMLQQET 804
Cdd:pfam02463 679 QELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE--------AEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 805 MRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKM 884
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 885 EKEIIHLKRDGENKSMQLSQLDmvLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQ 964
Cdd:pfam02463 831 KEEELEELALELKEEQKLEKLA--EEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 965 LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQ 1044
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEE 988
|
890 900 910
....*....|....*....|....*....|
gi 568936279 1045 KIIKLEGTLEKSELELKECNKQVESLNEKL 1074
Cdd:pfam02463 989 RYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
193-359 |
4.24e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 51.32 E-value: 4.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 193 REAEDKLEQSQK-MVIEKEHSLQEAKEECIKLKVDLLEQSKQgKRAERQRNEalynaeelskafqlykekvaeklEKVQD 271
Cdd:PRK12704 38 EEAKRILEEAKKeAEAIKKEALLEAKEEIHKLRNEFEKELRE-RRNELQKLE-----------------------KRLLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 272 EEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLmimamknsEVMSQLT--ESRQCIL-KLER 348
Cdd:PRK12704 94 KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL--------ERISGLTaeEAKEILLeKVEE 165
|
170
....*....|..
gi 568936279 349 ELE-DKDEIVRE 359
Cdd:PRK12704 166 EARhEAAVLIKE 177
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1041-1268 |
6.67e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 6.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1041 EMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEfimlqneQEISQLKKEIERTQQRMKEMESVIKE-- 1118
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ-------AEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1119 ---QEDYIATQYKEVIDLGQEL-----RLTQ-EQMQNTHSELVEARRQevqAQREIERLAGELEDIKQLSKEKEAHGNRL 1189
Cdd:COG3883 93 ralYRSGGSVSYLDVLLGSESFsdfldRLSAlSKIADADADLLEELKA---DKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568936279 1190 AEELGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQ 1268
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
820-1177 |
7.57e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.51 E-value: 7.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 820 QVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQkiIELTGTARQAKLEmdqyKEELSKMEKEIIHLKRDGENKS 899
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRK--LEEAEKARQAEMD----RQAAIYAEQERMAMERERELER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 900 MQLSQLDMVLDQTKT-ELEKTTNSVKELERLQhhtetelTETMQKREALENELQNAhgelkstlrqlqelrdvlQKAQLS 978
Cdd:pfam17380 353 IRQEERKRELERIRQeEIAMEISRMRELERLQ-------MERQQKNERVRQELEAA------------------RKVKIL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 979 LEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWElKQRAAQVTHLDMTIREHRGEMEQKIIKLEgtLEKSEL 1058
Cdd:pfam17380 408 EEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREME-RVRLEEQERQQQVERLRQQEEERKRKKLE--LEKEKR 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1059 ELKECNKQVESLNEK-LQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEdyiatqykevidlGQEL 1137
Cdd:pfam17380 485 DRKRAEEQRRKILEKeLEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQE-------------MEER 551
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568936279 1138 RLTQEQMQNTHSElvEARRQEVQAQREIERLAGELEDIKQ 1177
Cdd:pfam17380 552 RRIQEQMRKATEE--RSRLEAMEREREMMRQIVESEKARA 589
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
114-892 |
7.84e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 7.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 114 QEVKNLREKLHKLRQ----QNACLVTQNHSLMTKIESVHFElTQSKAKIAMLES-AQEQAANIpiLEEQIINLEAEVSAQ 188
Cdd:pfam15921 85 HQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRESqSQEDLRNQ--LQNTVHELEAAKCLK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 189 DKVLREAEDKLEQSQKMVIEKEHSLQEAKeeciKLKVDLLEQSkqGKRAERQRNEALYNAEELSKAF-QLYKEKVAE--- 264
Cdd:pfam15921 162 EDMLEDSNTQIEQLRKMMLSHEGVLQEIR----SILVDFEEAS--GKKIYEHDSMSTMHFRSLGSAIsKILRELDTEisy 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 265 ---KLEKVQDEEEILERNLSN-----CEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMIMAM----KNSEV 332
Cdd:pfam15921 236 lkgRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEqarnQNSMY 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 333 MSQLTESRQCILKLERELEDKDEIVREKFsllnenRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIPLKREIV 412
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKI------EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 413 GFRSSLCKHQRSSVSDKEdkcigccEANKLMISELRIKLAIREAEIQKLHANLTVNQlsqnvandsQECGKVNTLETEPV 492
Cdd:pfam15921 390 EKELSLEKEQNKRLWDRD-------TGNSITIDHLRRELDDRNMEVQRLEALLKAMK---------SECQGQMERQMAAI 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 493 KLGGSQVESIkdgdqQTVNKQYEREKQRLATGIEELRAKltQIEAENSDLKVnmAHRTSQFQLIQEELLEKASNASKLEN 572
Cdd:pfam15921 454 QGKNESLEKV-----SSLTAQLESTKEMLRKVVEELTAK--KMTLESSERTV--SDLTASLQEKERAIEATNAEITKLRS 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 573 EMTKKCSQLLILEKQLEEkiiaYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKIcfafekakkihlEQHKEMEKQI 652
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDH----LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLV------------GQHGRTAGAM 588
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 653 EQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSeetikvrQLDSA 732
Cdd:pfam15921 589 QVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERD-------QLLNE 661
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 733 LEICKEElalhLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQ--NAILQHT------LQQQQQMLQQET 804
Cdd:pfam15921 662 VKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQtrNTLKSMEgsdghaMKVAMGMQKQIT 737
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 805 MRNGELEDTQSKL------------EKQVSKQEQELQKQRESS--TEKlRKMEEKYETAIREVDLKRQKIIELTGTARQA 870
Cdd:pfam15921 738 AKRGQIDALQSKIqfleeamtnankEKHFLKEEKNKLSQELSTvaTEK-NKMAGELEVLRSQERRLKEKVANMEVALDKA 816
|
810 820
....*....|....*....|..
gi 568936279 871 KLEMDQYKEELSKMEKEIIHLK 892
Cdd:pfam15921 817 SLQFAECQDIIQRQEQESVRLK 838
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
115-361 |
9.62e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 9.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 115 EVKNLREKLHKLRQQNACLVTQNHSLMTKIESVHFELTQSKAKIAMLESAQEQA-ANIPILEEQIINLEAEVSAQDKVLR 193
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELeELIEELESELEALLNERASLEEALA 890
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 194 EAEDKLEQSQKMVIEKEHSLQEAKEECIKLKvDLLEQSKQgkRAERQRNEALYNAEELSKAFQLYKEKVAEKLEKVQDEE 273
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELR-EKLAQLEL--RLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDE 967
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 274 EILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHysgkeklmimamknsevmSQLTESRQcilKLERELEDK 353
Cdd:TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQK------------------EDLTEAKE---TLEEAIEEI 1026
|
....*...
gi 568936279 354 DEIVREKF 361
Cdd:TIGR02168 1027 DREARERF 1034
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
512-1118 |
9.62e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 9.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 512 KQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEK 591
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 592 ---IIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIhLEQHKEMEKQIEQLETQLEKRDQQFKE 668
Cdd:TIGR04523 214 kslESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI-KKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 669 QEKTMSILQQDilcKQHHLESldrllteskvEMEKENMKKDEALKALQIHVSEETIKVRQLDSALEICKEELalhlNQLE 748
Cdd:TIGR04523 293 LKSEISDLNNQ---KEQDWNK----------ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL----TNSE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 749 RNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQnailqhtlqqqqqmlqqetmrngeLEDTQSKLEKQvSKQEQEL 828
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQ------------------------INDLESKIQNQ-EKLNQQK 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 829 QKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMV 908
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 909 LDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEekyttikd 988
Cdd:TIGR04523 491 LKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKE-------- 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 989 ltaelrecKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELElkecNKQVE 1068
Cdd:TIGR04523 563 --------IDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE----NEKLS 630
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 568936279 1069 SLNEKLQNAKEQLrekefimlqnEQEISQLKKEIERTQQRMKEMESVIKE 1118
Cdd:TIGR04523 631 SIIKNIKSKKNKL----------KQEVKQIKETIKEIRNKWPEIIKKIKE 670
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
711-1301 |
1.10e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 711 ALKALQIHVSEETiKVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQ 790
Cdd:TIGR00618 182 ALMEFAKKKSLHG-KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 791 HTLQQQQQMLQQETMRnGELEDTQSKLEKQVSKQEQELQKQRessTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQA 870
Cdd:TIGR00618 261 LLKQLRARIEELRAQE-AVLEETQERINRARKAAPLAAHIKA---VTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 871 KLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVL----------DQTKTELEKTTNSVKELERLQHHTETELTET 940
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHtltqhihtlqQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 941 mQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWE 1020
Cdd:TIGR00618 417 -SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1021 LKQRAAQVTHLDMTIREHRGEMEQKIIK--LEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQL 1098
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1099 KKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQL 1178
Cdd:TIGR00618 576 TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTL 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1179 SKEKEAHGNRlaeelgASQVREAHLEARMQAEIKKLSSEVDSLKE-----AYQIEMISHQENHAK--------WKLSAES 1245
Cdd:TIGR00618 656 TQERVREHAL------SIRVLPKELLASRQLALQKMQSEKEQLTYwkemlAQCQTLLRELETHIEeydrefneIENASSS 729
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 568936279 1246 QKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTR 1301
Cdd:TIGR00618 730 LGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA 785
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1124-1316 |
1.12e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1124 ATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHL 1203
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1204 EARMQAEIKKLSSEVDSL---KEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQD 1280
Cdd:COG4942 96 RAELEAQKEELAELLRALyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 568936279 1281 RNEVIEAANEALLIKESELTRLQAKISGHEKTEDTK 1316
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
483-1121 |
1.31e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 483 KVNTLETEPVKLGGSQVESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTqiEAENSDLKVNMAHRTSQFQLIQEELLE 562
Cdd:TIGR00618 220 RKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE--ELRAQEAVLEETQERINRARKAAPLAA 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 563 KASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQElmeknekiRSLESNINTEHEKICFAFEKAKKI-- 640
Cdd:TIGR00618 298 HIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--------RRLLQTLHSQEIHIRDAHEVATSIre 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 641 HLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDIlCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVS 720
Cdd:TIGR00618 370 ISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQ-ATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAIT 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 721 EETIKVRQLDSALEICKEELAlHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSeqnaILQHTLQQQQQML 800
Cdd:TIGR00618 449 CTAQCEKLEKIHLQESAQSLK-EREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSC----IHPNPARQDIDNP 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 801 QQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYET---------AIREVDLKRQKIIELTGTARQAK 871
Cdd:TIGR00618 524 GPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSfsiltqcdnRSKEDIPNLQNITVRLQDLTEKL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 872 LEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTtnsvkELERLQHHTETELTETMQKREALENEL 951
Cdd:TIGR00618 604 SEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAL-----QLTLTQERVREHALSIRVLPKELLASR 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 952 QNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHL 1031
Cdd:TIGR00618 679 QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKA 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1032 DMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLRE--------KEFIMLQNEQEISQLKKEIE 1103
Cdd:TIGR00618 759 RTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQeipsdediLNLQCETLVQEEEQFLSRLE 838
|
650
....*....|....*...
gi 568936279 1104 RTQQRMKEMESVIKEQED 1121
Cdd:TIGR00618 839 EKSATLGEITHQLLKYEE 856
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
500-1016 |
1.67e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 500 ESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTQIE--AENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKK 577
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKkkAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 578 CSQLLilEKQLEEKIIAYSsiAAKNAEleqELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHKEMEKQIEQLET 657
Cdd:PTZ00121 1379 KADAA--KKKAEEKKKADE--AKKKAE---EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 658 QLEKRDQQFKEQEKTMSILQQDILCKQHHLEsldRLLTESKVEMEKENMKKDEALKALQIHV-SEETIKVRQLDSALEIC 736
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEA---KKADEAKKKAEEAKKKADEAKKAAEAKKkADEAKKAEEAKKADEAK 1528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 737 KEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSK 816
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 817 LEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGE 896
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 897 NKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHgelksTLRQLQELRDVLQKAQ 976
Cdd:PTZ00121 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE-----EAKKDEEEKKKIAHLK 1763
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 568936279 977 LSLEEKYTTIKDLTAELRECKMEIEDKKQELiEMDQALKE 1016
Cdd:PTZ00121 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRM-EVDKKIKD 1802
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
936-1266 |
2.12e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.74 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 936 ELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALK 1015
Cdd:pfam07888 42 ERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1016 ERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLR------------- 1082
Cdd:pfam07888 122 AQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRslskefqelrnsl 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1083 -EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKE----QEDYIATQYKeVIDLGQELRLTQEQMQNTHSELVEARRQ 1157
Cdd:pfam07888 202 aQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEElrslQERLNASERK-VEGLGEELSSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1158 EVQAQREIERLAGEL-EDIKQLSKEKEAhgnrLAEELGASQVREAHLEARMQAEIKKLS---SEVDSLKEAYQIEMISHQ 1233
Cdd:pfam07888 281 AAQLTLQLADASLALrEGRARWAQERET----LQQSAEADKDRIEKLSAELQRLEERLQeerMEREKLEVELGREKDCNR 356
|
330 340 350
....*....|....*....|....*....|....*.
gi 568936279 1234 ENHAKWKLSAESQKTSV---QQLNEQLEKAKQELEE 1266
Cdd:pfam07888 357 VQLSESRRELQELKASLrvaQKEKEQLQAEKQELLE 392
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
568-1002 |
2.62e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 568 SKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKIcfafEKAKKihleQHKE 647
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEI----EKLKK----ENQS 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 648 MEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENmkkdealkalqihvsEETIKVR 727
Cdd:TIGR04523 382 YKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNN---------------SEIKDLT 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 728 QLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNailqhtlQQQQQMLQQETMRN 807
Cdd:TIGR04523 447 NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK-------KELEEKVKDLTKKI 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 808 GELEDTQSKLEKQVSKQEQELqKQRESSTEKLrKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKE 887
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKI-SDLEDELNKD-DFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 888 IIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELT---ETMQKREALENELQNAHGELKSTLRQ 964
Cdd:TIGR04523 598 KKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKqikETIKEIRNKWPEIIKKIKESKTKIDD 677
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 568936279 965 LQEL-----------------RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1002
Cdd:TIGR04523 678 IIELmkdwlkelslhykkyitRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELEN 732
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
829-1200 |
3.16e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 3.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 829 QKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRdgenKSMQLSQLDMV 908
Cdd:PRK04863 347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT----RAIQYQQAVQA 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 909 LDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAhgelKSTLRQLQELRDVLQKA--QLSLEEKYTTI 986
Cdd:PRK04863 423 LERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA----QAAHSQFEQAYQLVRKIagEVSRSEAWDVA 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 987 KDLTAELRECKMeiedkkqeLIEMDQALKERNWELKQRAAQvthlDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQ 1066
Cdd:PRK04863 499 RELLRRLREQRH--------LAEQLQQLRMRLSELEQRLRQ----QQRAERLLAEFCKRLGKNLDDEDELEQLQEELEAR 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1067 VESLNEKLQNAKEQlrekefiMLQNEQEISQLKKEIERTQQRMKEMesvIKEQE--DYIATQYKEVIDLGQELrltQEQM 1144
Cdd:PRK04863 567 LESLSESVSEARER-------RMALRQQLEQLQARIQRLAARAPAW---LAAQDalARLREQSGEEFEDSQDV---TEYM 633
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 568936279 1145 QNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVRE 1200
Cdd:PRK04863 634 QQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGGVLLSE 689
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1041-1218 |
4.47e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1041 EMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESvikeqe 1120
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN------ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1121 dyiatqYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAhgnRLAEELGASQVRE 1200
Cdd:COG1579 88 ------NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKA---ELDEELAELEAEL 158
|
170
....*....|....*...
gi 568936279 1201 AHLEARMQAEIKKLSSEV 1218
Cdd:COG1579 159 EELEAEREELAAKIPPEL 176
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1000-1133 |
7.45e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.16 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1000 IEDKKQELIEMDQALKERNWELKQRAAQvthldmtirEHRGEMEQKIIKLEGTLEK-----SEL--ELKECNKQVESLNE 1072
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEE---------RELTEEEEEIRRLEEQVERleaevEELeaELEEKDERIERLER 448
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568936279 1073 KLQNAKEQLREKefimLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIAtQYKEVIDL 1133
Cdd:COG2433 449 ELSEARSEERRE----IRKDREISRLDREIERLERELEEERERIEELKRKLE-RLKELWKL 504
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
946-1119 |
8.53e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 8.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 946 ALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKE--RNWELKQ 1023
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1024 RAAQVTHLdmtiREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREkefimlqneqEISQLKKEIE 1103
Cdd:COG1579 94 LQKEIESL----KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE----------ELAELEAELE 159
|
170
....*....|....*.
gi 568936279 1104 RTQQRMKEMESVIKEQ 1119
Cdd:COG1579 160 ELEAEREELAAKIPPE 175
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
988-1301 |
1.00e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 988 DLTAELRECKMEIEDKKQELIEMDQALKERNWELK------QRAAQVTHLDMTIREHRGemeqKIIKLEGTLEKSELELK 1061
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESdleqdyQAASDHLNLVQTALRQQE----KIERYQADLEELEERLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1062 ECNKQVESLNEKLQNAKEQLRekefimlQNEQEISQLKKEIERTQQRMKEMESVikeqedyiATQYKEVIDLGQELR--- 1138
Cdd:PRK04863 366 EQNEVVEEADEQQEENEARAE-------AAEEEVDELKSQLADYQQALDVQQTR--------AIQYQQAVQALERAKqlc 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1139 ----LTQEQMQNTHSELV---------------------EARRQEVQAQREIERLAGELE--DIKQLSKEKEAHGNR--- 1188
Cdd:PRK04863 431 glpdLTADNAEDWLEEFQakeqeateellsleqklsvaqAAHSQFEQAYQLVRKIAGEVSrsEAWDVARELLRRLREqrh 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1189 LAEELGASQVREAHLEARMQAE----------IKKLSSEVD--SLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQ 1256
Cdd:PRK04863 511 LAEQLQQLRMRLSELEQRLRQQqraerllaefCKRLGKNLDdeDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568936279 1257 LEKAKQELE-------EAQDTVSNLHQQV---QDRNEVIEAANEALLIKESELTR 1301
Cdd:PRK04863 591 LQARIQRLAarapawlAAQDALARLREQSgeeFEDSQDVTEYMQQLLERERELTV 645
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
173-1257 |
1.02e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.35 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 173 ILEEQIINLEAEVSA--QDKVLREAEDKLE-QSQKMVIEKEHS-LQEAKEECIKLKVDLLEQSKqgkraerqrNEALYNA 248
Cdd:TIGR01612 668 IYEDDIDALYNELSSivKENAIDNTEDKAKlDDLKSKIDKEYDkIQNMETATVELHLSNIENKK---------NELLDII 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 249 EELSKafQLYKEkVAEKLEKVQDEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKF-----------RELKEEHYS 317
Cdd:TIGR01612 739 VEIKK--HIHGE-INKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYndqinidnikdEDAKQNYDK 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 318 GKEKLMIMAMKNSEVMSQLTESR----------QCILKLERELEDKDEIVREKFSLLNEnrelKVRVATQNERLELCQQD 387
Cdd:TIGR01612 816 SKEYIKTISIKEDEIFKIINEMKfmkddflnkvDKFINFENNCKEKIDSEHEQFAELTN----KIKAEISDDKLNDYEKK 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 388 IDNSRVEL----KSLEKLITQIPLKREIVGFrSSLCKHQRSSVSDKEDKCIGCCEANKLMISELRIKLAIREAEIQKLHA 463
Cdd:TIGR01612 892 FNDSKSLIneinKSIEEEYQNINTLKKVDEY-IKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDN 970
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 464 NLT--VNQLSQNVANDSQECGKVNTleTEPVKLGGSQVESIKDGDQQTVNKQYErEKQRLATGIEElrakltQIEAENSD 541
Cdd:TIGR01612 971 TLIdkINELDKAFKDASLNDYEAKN--NELIKYFNDLKANLGKNKENMLYHQFD-EKEKATNDIEQ------KIEDANKN 1041
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 542 L-KVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNeKIRSLE 620
Cdd:TIGR01612 1042 IpNIEIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYADEIN-KIKDDI 1120
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 621 SNINTEHEKICFAFEKAKKIHLEQHKEMEKQIEQLETQLEK--RDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTE-S 697
Cdd:TIGR01612 1121 KNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKaiSNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEiA 1200
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 698 KVEMEKE--------NMKKDEALKALQI-HVSEETIKVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCL 768
Cdd:TIGR01612 1201 EIEKDKTsleevkgiNLSYGKNLGKLFLeKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFN 1280
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 769 QKELKIKTHNLeeTSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSkqeqELQKQRESSTEKLRKMEEKYET 848
Cdd:TIGR01612 1281 ISHDDDKDHHI--ISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLL----DAQKHNSDINLYLNEIANIYNI 1354
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 849 airevdLKRQKIIELTGTARQAKLEMDQY----KEELSKMEKEIIHLKRDGEnksmqlsqldmvLDQTKTELEKTTNSVK 924
Cdd:TIGR01612 1355 ------LKLNKIKKIIDEVKEYTKEIEENnkniKDELDKSEKLIKKIKDDIN------------LEECKSKIESTLDDKD 1416
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 925 ELERLQHHTETElTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE-EKYTTIKDLTAELRECKMEIEDK 1003
Cdd:TIGR01612 1417 IDECIKKIKELK-NHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKiKKDNATNDHDFNINELKEHIDKS 1495
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1004 KQELIEMDQALK--ERNWEL-KQRAAQVTHLdmtirehrgemeqkiiklegtLEK-SELELKECNKQVESLNEKLQNAKE 1079
Cdd:TIGR01612 1496 KGCKDEADKNAKaiEKNKELfEQYKKDVTEL---------------------LNKySALAIKNKFAKTKKDSEIIIKEIK 1554
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1080 QLReKEFIMlqneqeisqlkkEIERTQQRMKEMESVIKEQEDYIATQYKE---VIDLgqelRLTQEQMQNTHSELVEARR 1156
Cdd:TIGR01612 1555 DAH-KKFIL------------EAEKSEQKIKEIKKEKFRIEDDAAKNDKSnkaAIDI----QLSLENFENKFLKISDIKK 1617
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1157 QEVQAQREIERLAGELEDIKQLSKEKE-----AHGNRLAEELGASQVREAHLEAR------MQAEIKKLSSEVDSLKEAY 1225
Cdd:TIGR01612 1618 KINDCLKETESIEKKISSFSIDSQDTElkengDNLNSLQEFLESLKDQKKNIEDKkkeldeLDSEIEKIEIDVDQHKKNY 1697
|
1130 1140 1150
....*....|....*....|....*....|...
gi 568936279 1226 QIEMISHQENHAKW-KLSAESQKTSVQQLNEQL 1257
Cdd:TIGR01612 1698 EIGIIEKIKEIAIAnKEEIESIKELIEPTIENL 1730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
825-1315 |
1.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 825 EQELQKQRESsTEKLRKMEEKYETAIR-EVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLS 903
Cdd:COG4913 241 HEALEDAREQ-IELLEPIRELAERYAAaRERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 904 QLDMVLDQTKTELEKT-TNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK 982
Cdd:COG4913 320 ALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 983 YTTIKD----LTAELRECKMEIEDKKQELiemdQALKERNWELKQRAAQVthldmtirehRGEMEQKIiklegTLEKSEL 1058
Cdd:COG4913 400 LEALEEalaeAEAALRDLRRELRELEAEI----ASLERRKSNIPARLLAL----------RDALAEAL-----GLDEAEL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1059 ----ELKecnkQVESLNEKLQNAKEQ-LREKEFIMLQNEQEISQLKKEIERTQQRMK----------------------- 1110
Cdd:COG4913 461 pfvgELI----EVRPEEERWRGAIERvLGGFALTLLVPPEHYAAALRWVNRLHLRGRlvyervrtglpdperprldpdsl 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1111 --EMESVIKEQEDYIATQYKEVIDL-----GQELR-----LTQE-QMQNTH------------SELV---EARRQEVQAQ 1162
Cdd:COG4913 537 agKLDFKPHPFRAWLEAELGRRFDYvcvdsPEELRrhpraITRAgQVKGNGtrhekddrrrirSRYVlgfDNRAKLAALE 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1163 REIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREAHLEArmqaeikklssevdslkeayQIEMISHQENHAKWkls 1242
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD--------------------EIDVASAEREIAEL--- 673
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568936279 1243 aESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGHEKTEDT 1315
Cdd:COG4913 674 -EAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
909-1118 |
1.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 909 LDQTKTELEKTTNSVKELeRLQH---HTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyTT 985
Cdd:COG3206 184 LPELRKELEEAEAALEEF-RQKNglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE--LL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 986 IKDLTAELREckmEIEDKKQELIEMDQALKERNWELKQRAAQvthldmtIREHRGEMEQKIIKLegtLEKSELELKECNK 1065
Cdd:COG3206 261 QSPVIQQLRA---QLAELEAELAELSARYTPNHPDVIALRAQ-------IAALRAQLQQEAQRI---LASLEAELEALQA 327
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568936279 1066 QVESLNEKLQNAKEQLREkefiMLQNEQEISQLKKEIERTQQRMKEMESVIKE 1118
Cdd:COG3206 328 REASLQAQLAQLEARLAE----LPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
196-974 |
1.08e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 196 EDKLEQSQKMVIEKEHSLQ-----------------------EAKEECIKLKVDLLEQSKQGKRAERQRNEALYNA---- 248
Cdd:TIGR02169 194 DEKRQQLERLRREREKAERyqallkekreyegyellkekealERQKEAIERQLASLEEELEKLTEEISELEKRLEEieql 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 249 -----EELSKAFQLYKEKVAEKLEKVQDEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELK----------- 312
Cdd:TIGR02169 274 leelnKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEreieeerkrrd 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 313 ---EEHYSGKEKLMIMAMKNSEVMSQLTESRQCILKLERELED----KDEIVREKFSLLNENRELKVRVATQNERLELCQ 385
Cdd:TIGR02169 354 kltEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKlkreINELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 386 QDIDNSRVELKSLEKLITQIPLKREIVgfRSSLCKHQRSSVSDKEDKcigccEANKLMISELRIKLAIREAEIQKLHANL 465
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQL--AADLSKYEQELYDLKEEY-----DRVEKELSKLQRELAEAEAQARASEERV 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 466 TVNQLSQNVANDS--------QECGKVNTLETEPVKL-GGSQVESIKDGDQQTVNKQYEREKQRLATGIEELraKLTQIE 536
Cdd:TIGR02169 507 RGGRAVEEVLKASiqgvhgtvAQLGSVGERYATAIEVaAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFL--PLNKMR 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 537 AENSDLKVNMAHRTSQFQLIQEELLEKASNASK--------LENEMTKK----CSQLLILEKQLEEK-------IIAYSS 597
Cdd:TIGR02169 585 DERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKyvfgdtlvVEDIEAARrlmgKYRMVTLEGELFEKsgamtggSRAPRG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 598 IAAKNAELEQELMEKNEKIRSLESNIN------TEHEKICFAFEKAKKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEK 671
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSslqselRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 672 TMSILQQDILCKQHHLESLDrlltESKVEMEKENMKKDEALKALQIHVSEEtiKVRQLDSALEICKEELAlhlnQLERNK 751
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHS--RIPEIQAELSKLEEEVS----RIEARL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 752 EKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQHTLQQQqqmlqqetmrNGELEDTQSKLEK------QVSKQE 825
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL----------NGKKEELEEELEEleaalrDLESRL 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 826 QELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEiihlkrdgenksmqlSQL 905
Cdd:TIGR02169 885 GDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI---------------PEE 949
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568936279 906 DMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKRealeNELQNAHGELKSTLRQLQELRDVLQK 974
Cdd:TIGR02169 950 ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
806-1081 |
1.37e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 806 RNGELEDTQSKLEKQVSKQEQELQKQRESSTEkLRKMEEKY-----ETAIREVDLKRQKIIEltgtARQAKLEMDQYKEE 880
Cdd:PRK04863 845 RRVELERALADHESQEQQQRSQLEQAKEGLSA-LNRLLPRLnlladETLADRVEEIREQLDE----AEEAKRFVQQHGNA 919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 881 LSKMEKEIIHLKRDGEnksmQLSQLDMVLDQTKTELEKTTN---SVKELERLQHH-----------TETELTETMQKR-E 945
Cdd:PRK04863 920 LAQLEPIVSVLQSDPE----QFEQLKQDYQQAQQTQRDAKQqafALTEVVQRRAHfsyedaaemlaKNSDLNEKLRQRlE 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 946 ALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDkkqeliEMDQALKERNWELKQRa 1025
Cdd:PRK04863 996 QAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADS------GAEERARARRDELHAR- 1068
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 568936279 1026 aqvthldmtIREHRGEMEQkiikLEGTLEKSELELKECNKQVESLNEKLQNAKEQL 1081
Cdd:PRK04863 1069 ---------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
834-1045 |
1.39e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 834 SSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTK 913
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 914 TELEKTTNSVKELERLQHHTE--------------TELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSL 979
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGrqpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568936279 980 EEKYTTIKDLTAELREckmEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045
Cdd:COG4942 177 EALLAELEEERAALEA---LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
848-1173 |
1.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 848 TAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGEnksMQLSQLDMV--------LDQTKTELEKT 919
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE---YSWDEIDVAsaereiaeLEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 920 TNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTikDLTAELREckmE 999
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFAA---A 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1000 IEDKKQEliEMDQALKERNWELKQRAAQ-VTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVES-LNEKLQNA 1077
Cdd:COG4913 759 LGDAVER--ELRENLEERIDALRARLNRaEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDgLPEYEERF 836
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1078 KEQLREkefimlQNEQEI----SQLKKEIERTQQRMKEMESVIKE----QEDYI-----ATQYKEVIDLGQELRLTQEQM 1144
Cdd:COG4913 837 KELLNE------NSIEFVadllSKLRRAIREIKERIDPLNDSLKRipfgPGRYLrlearPRPDPEVREFRQELRAVTSGA 910
|
330 340
....*....|....*....|....*....
gi 568936279 1145 QNTHSELVEARRQEVqaQREIERLAGELE 1173
Cdd:COG4913 911 SLFDEELSEARFAAL--KRLIERLRSEEE 937
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
113-310 |
1.68e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 113 DQEVKNLREKLHKLRQQnaclvtqnhslMTKIESVHFELTQSKAKIAMLESAQEQAANIPILEEQIINLEAEVSAqdkvL 192
Cdd:COG4913 616 EAELAELEEELAEAEER-----------LEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELER----L 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 193 REAEDKLEQSQKMVIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQLYKEKVAEKLEKVQDE 272
Cdd:COG4913 681 DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALG 760
|
170 180 190
....*....|....*....|....*....|....*...
gi 568936279 273 EEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRE 310
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNRAEEELERAMRAFNR 798
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
935-1208 |
2.18e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 935 TELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD--------LTAELRECKMEIEDKKQE 1006
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqwkekrdeLNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1007 LIEMD-QALKERNWELKQRAAQVTHLDmTIREHRGEMEQKIIKLEGTLEKSELELK--------ECNKQVESLNEKLQNA 1077
Cdd:pfam12128 324 LEALEdQHGAFLDADIETAAADQEQLP-SWQSELENLEERLKALTGKHQDVTAKYNrrrskikeQNNRDIAGIKDKLAKI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1078 KEQL-REKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELrltqEQMQNTHSELVEARR 1156
Cdd:pfam12128 403 REARdRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELL----LQLENFDERIERARE 478
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568936279 1157 QEVQAQREIERLAGELEDIKQLSKEKEAHGNRlaEELGASQVREAHLEARMQ 1208
Cdd:pfam12128 479 EQEAANAEVERLQSELRQARKRRDQASEALRQ--ASRRLEERQSALDELELQ 528
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
740-1159 |
2.33e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 740 LALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEK 819
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 820 QVS-----KQEQELQKQRESSTEKLRKMEEKYEtairEVDLKRQKIIELTGTARQAKLEMDQYKEELS-KMEKEIIHLKR 893
Cdd:COG4717 124 LLQllplyQELEALEAELAELPERLEELEERLE----ELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 894 DGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETE------------------------------------- 936
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaallallglggsllsliltiagvl 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 937 ----------LTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQE 1006
Cdd:COG4717 280 flvlgllallFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1007 LIEMDQALKERNWELKQRAAQVTHLDMtiREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQ--NAKEQLREK 1084
Cdd:COG4717 360 EEELQLEELEQEIAALLAEAGVEDEEE--LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEEL 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1085 EFIMLQNEQEISQLKKEIERTQQRMKEME-----SVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEV 1159
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEedgelAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
809-1292 |
2.47e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 809 ELEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEK---YETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKME 885
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKeeeYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 886 --KEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLR 963
Cdd:COG4717 130 lyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 964 QLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKmEIEDKKQELIEMDQ--ALKERNWELKQRAAQVTHLDMTIREHRGE 1041
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEE-RLKEARLLLLIAAAllALLGLGGSLLSLILTIAGVLFLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1042 MEQKIIKLEGTLEKSELELKECNKQVESLNEKLQnakEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEqed 1121
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELE---ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE--- 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1122 yiatqykevIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQlskekeahgnRLAEELGASQVR-E 1200
Cdd:COG4717 363 ---------LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEE----------QLEELLGELEELlE 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1201 AHLEARMQAEIKKLSSEVDSLKEayQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEE----------AQDT 1270
Cdd:COG4717 424 ALDEEELEEELEELEEELEELEE--ELEELREELAELEAELEQLEEDGELAELLQELEELKAELRElaeewaalklALEL 501
|
490 500
....*....|....*....|....
gi 568936279 1271 VSNLHQQVQDRN--EVIEAANEAL 1292
Cdd:COG4717 502 LEEAREEYREERlpPVLERASEYF 525
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
599-835 |
2.78e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 599 AAKNAELEQELMEKNEKIRSLESNINTEhekicfafEKAKKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQ 678
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 679 DILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETIKVRQLDSALEICK---EELALHLNQLERNKEKFE 755
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARReqaEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 756 RQLKKKSEevycLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETmrnGELEDTQSKLEKQVSKQEQELQKQRESS 835
Cdd:COG4942 171 AERAELEA----LLAELEEERAALEALKAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
775-1123 |
2.89e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.66 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 775 KTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLeKQVSKQEQELQKQRESSTEKLRKM---EEKYETAIR 851
Cdd:PLN02939 95 DDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMI-QNAEKNILLLNQARLQALEDLEKIlteKEALQGKIN 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 852 EVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHlkrDGENKSMQLSQLDMVLDQTKTELEKTTNSVKEL-ERLQ 930
Cdd:PLN02939 174 ILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLI---RGATEGLCVHSLSKELDVLKEENMLLKDDIQFLkAELI 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 931 HHTETEltETMQKREALENELQNAHGELKSTLRQLQElrDVLQKAQLSLeekyttikdltaelrECKMEIEDKKQELiem 1010
Cdd:PLN02939 251 EVAETE--ERVFKLEKERSLLDASLRELESKFIVAQE--DVSKLSPLQY---------------DCWWEKVENLQDL--- 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1011 dqalkernweLKQRAAQVTHLDMTIREHRgEMEQKIIKLEGTLEKSELElKECNKQVESLNEKLQNAKEQLREKEFIMLQ 1090
Cdd:PLN02939 309 ----------LDRATNQVEKAALVLDQNQ-DLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLEERLQASDHEIHS 376
|
330 340 350
....*....|....*....|....*....|...
gi 568936279 1091 NEQEISQLKKEIERTQQRMKEmESVIKEQEDYI 1123
Cdd:PLN02939 377 YIQLYQESIKEFQDTLSKLKE-ESKKRSLEHPA 408
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
808-1108 |
3.19e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 808 GELEDTQSKLEKQVSKQEqELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTA---RQAK--LE--------- 873
Cdd:PRK04863 355 ADLEELEERLEEQNEVVE-EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAiqyQQAVqaLErakqlcglp 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 874 ------MDQYKEELSKMEKEIIHLKRDGENKsmqLSQLDMVLDQTKTELEKTTNSVKELERLQ-HHTETELTETMQKREA 946
Cdd:PRK04863 434 dltadnAEDWLEEFQAKEQEATEELLSLEQK---LSVAQAAHSQFEQAYQLVRKIAGEVSRSEaWDVARELLRRLREQRH 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 947 L---ENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQ 1023
Cdd:PRK04863 511 LaeqLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1024 RAAQVTHLDMTirehrgemEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIE 1103
Cdd:PRK04863 591 LQARIQRLAAR--------APAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIE 662
|
....*
gi 568936279 1104 RTQQR 1108
Cdd:PRK04863 663 RLSQP 667
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
177-679 |
3.48e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 177 QIINLEAEVSAQDKVLREAEDKLEQsqkmvIEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEAlyNAEELSKAFQ 256
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEE-----LEAELAELEAELEELRLELEELELELEEAQAEEYELLA--ELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 257 LYKEK---VAEKLEKVQDEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEhYSGKEKLMIMAM-----K 328
Cdd:COG1196 306 RLEERrreLEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA-LLEAEAELAEAEeeleeL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 329 NSEVMSQLTESRQCILKLERELEDKDEIVREKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIPLK 408
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 409 REIVGFRSSLCKHQRSSVSDKEDKcigcCEANKLMISELRIKLAIREAEIQKLHANLTVNQLSQNVAndsQECGKVNTLE 488
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAE----AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA---VLIGVEAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 489 TEPVKLGGSQVESIKDGDQQTVNKQYEREKQRL---ATGIEELRAKLTQIEAENSDLKVNMAHRT----------SQFQL 555
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagrATFLPLDKIRARAALAAALARGAIGAAVDlvasdlreadARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 556 IQEELLEKASNASKLEN---EMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICF 632
Cdd:COG1196 618 LGDTLLGRTLVAARLEAalrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568936279 633 AFEKAKKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQD 679
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
551-1116 |
4.01e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.89 E-value: 4.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 551 SQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKN---EKIRSLESNINTEH 627
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSsleDMKNRYESEIKTAE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 628 EKICFAFEKAKKIhleqhKEMEKQIEQLETqlekrDQQFKEQEKTMSI--LQQDILCKQHHLESLDrllteSKVEMEKEN 705
Cdd:PRK01156 263 SDLSMELEKNNYY-----KELEERHMKIIN-----DPVYKNRNYINDYfkYKNDIENKKQILSNID-----AEINKYHAI 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 706 MKKdeaLKALQIHVSEETIKVRQldsaleicKEELALHLNQLERNKEKFERQLKKKSeevyclQKELKIKthnlEETSEQ 785
Cdd:PRK01156 328 IKK---LSVLQKDYNDYIKKKSR--------YDDLNNQILELEGYEMDYNSYLKSIE------SLKKKIE----EYSKNI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 786 NAILQHTLQQQQQMLQQETMRNGELEDTQSKLEkQVSKQEQELQKQRESSTEKLRKMEEKYETairevdLKRQKIIELTG 865
Cdd:PRK01156 387 ERMSAFISEILKIQEIDPDAIKKELNEINVKLQ-DISSKVSSLNQRIRALRENLDELSRNMEM------LNGQSVCPVCG 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 866 T---ARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQ-TKTELEKTTNSVKELERLQHH------TET 935
Cdd:PRK01156 460 TtlgEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYlESEEINKSINEYNKIESARADledikiKIN 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 936 ELTETMQKREALENELQNAH-GELKSTLRQLQELRDV-----LQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK----- 1004
Cdd:PRK01156 540 ELKDKHDKYEEIKNRYKSLKlEDLDSKRTSWLNALAVislidIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKsyidk 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1005 --QELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK--IIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQ 1080
Cdd:PRK01156 620 siREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsIIPDLKEITSRINDIEDNLKKSRKALDDAKANRAR 699
|
570 580 590
....*....|....*....|....*....|....*.
gi 568936279 1081 LREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVI 1116
Cdd:PRK01156 700 LESTIEILRTRINELSDRINDINETLESMKKIKKAI 735
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
939-1153 |
4.64e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 939 ETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTtikDLTAELRECKMEIEDKKQELIEMDQALKERN 1018
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYD---ELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1019 WELKQRAAQVTHLDMTIREHRGEME------------QKIIKLEGTLEKSELELKECNKQVEslneKLQNAKEQLREK-- 1084
Cdd:PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKELQHSLE----KLDTAIDELEEImd 330
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568936279 1085 EFIMLQNEQ-----EISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTqeqmQNTHSELVE 1153
Cdd:PHA02562 331 EFNEQSKKLlelknKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI----VKTKSELVK 400
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
816-1016 |
5.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 816 KLEKQVSKQEQELQKQRESSteKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDG 895
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKN--GLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSP 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 896 ENKSM--QLSQLDMVLDQTKTELEKTTNSVKELERlqhhtetELTETmqkREALENELQNAHGELKSTLRQLQELRDVLQ 973
Cdd:COG3206 264 VIQQLraQLAELEAELAELSARYTPNHPDVIALRA-------QIAAL---RAQLQQEAQRILASLEAELEALQAREASLQ 333
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568936279 974 KAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKE 1016
Cdd:COG3206 334 AQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-995 |
5.13e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 260 EKVAEKLEKVQDEEEILERNLSNCEKENKRlqekcnlykseleilKEKFRELKEEhysgkeklmimaMKNSEVMSQLTES 339
Cdd:COG1196 182 EATEENLERLEDILGELERQLEPLERQAEK---------------AERYRELKEE------------LKELEAELLLLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 340 RQCILKLERELEDKDEIVREKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIplkreivgfrsslc 419
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL-------------- 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 420 khqrssvsdkedkcigccEANKLMISELRIKLAIREAEIQKLHANLTvNQLSQNVANDSQECGKVNTLETEpvklggsqv 499
Cdd:COG1196 301 ------------------EQDIARLEERRRELEERLEELEEELAELE-EELEELEEELEELEEELEEAEEE--------- 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 500 esikdgdQQTVNKQYEREKQRLatgiEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCS 579
Cdd:COG1196 353 -------LEEAEAELAEAEEAL----LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 580 QLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKIcfAFEKAKKIHLEQHKEMEKQIEQLETQL 659
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA--ALLEAALAELLEELAEAAARLLLLLEA 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 660 EKRDQQFKEQEKTMSIL-QQDILCKQHHLESLDRLLTESKVEmekenmkkDEALKALQIHVSEETIKVRQLDSALEICKE 738
Cdd:COG1196 500 EADYEGFLEGVKAALLLaGLRGLAGAVAVLIGVEAAYEAALE--------AALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 739 ELA--LHLNQLERNKEKFERQLKKKSEE----VYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELED 812
Cdd:COG1196 572 GRAtfLPLDKIRARAALAAALARGAIGAavdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 813 TQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLK 892
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 893 RDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERlqhhtetELTETMQKREALEN-------ELQnahgELKSTLRQL 965
Cdd:COG1196 732 AEREELLEELLEEEELLEEEALEELPEPPDLEELER-------ELERLEREIEALGPvnllaieEYE----ELEERYDFL 800
|
730 740 750
....*....|....*....|....*....|
gi 568936279 966 QELRDVLQKAQLSLEEkytTIKDLTAELRE 995
Cdd:COG1196 801 SEQREDLEEARETLEE---AIEEIDRETRE 827
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
936-1304 |
5.39e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 936 ELTETMQKREALENELQNAHGEL---KSTLRQ----------LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1002
Cdd:COG3096 314 ELEELSARESDLEQDYQAASDHLnlvQTALRQqekieryqedLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1003 KKQELIEMDQALKErnweLKQRAAQVthldmtirehrgemeQKIIKlegTLEKSELELKECNKQVESLNEKLQNAKEQLR 1082
Cdd:COG3096 394 LKSQLADYQQALDV----QQTRAIQY---------------QQAVQ---ALEKARALCGLPDLTPENAEDYLAAFRAKEQ 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1083 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQY-KEVIDLGQELRLTQEQMQNTHSELVEARRQEVQa 1161
Cdd:COG3096 452 QATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTaRELLRRYRSQQALAQRLQQLRAQLAELEQRLRQ- 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1162 QREIERLAGELedIKQLSKEKEAhgnrlAEELgasqvreAHLEARMQAEIKKLSSEVDSLKEAyQIEMISHQENHA---- 1237
Cdd:COG3096 531 QQNAERLLEEF--CQRIGQQLDA-----AEEL-------EELLAELEAQLEELEEQAAEAVEQ-RSELRQQLEQLRarik 595
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568936279 1238 -------KWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEvIEAANEALlikESELTRLQA 1304
Cdd:COG3096 596 elaarapAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDE-LAARKQAL---ESQIERLSQ 665
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
939-1270 |
5.71e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 939 ETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERN 1018
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1019 WELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLqnakeqlrekefimLQNEQEISQL 1098
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDI--------------LLLEDQNSKL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1099 KKEIERTQQRMKEMESVIKEQEdyiatqykEVIDLGQELRLTQEQMQnthSELVEARRQEVQAQREIE----RLAGELED 1174
Cdd:pfam01576 151 SKERKLLEERISEFTSNLAEEE--------EKAKSLSKLKNKHEAMI---SDLEERLKKEEKGRQELEkakrKLEGESTD 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1175 IKQLSKEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLSSEVDSLKEAyQIEMISHQENHAKWKLSAESQKTSVQQLN 1254
Cdd:pfam01576 220 LQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIREL-EAQISELQEDLESERAARNKAEKQRRDLG 298
|
330
....*....|....*.
gi 568936279 1255 EQLEKAKQELEEAQDT 1270
Cdd:pfam01576 299 EELEALKTELEDTLDT 314
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
498-1088 |
5.87e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.66 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 498 QVESIKDgDQQTVNKQYERE-------KQRLATGIEELRAKLTQIEA------ENSDLK------VNMAHRTSQFQLIQE 558
Cdd:TIGR01612 1112 EINKIKD-DIKNLDQKIDHHikaleeiKKKSENYIDEIKAQINDLEDvadkaiSNDDPEeiekkiENIVTKIDKKKNIYD 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 559 ELLEKASNASKLENEMTK------------KCSQLLILEKQLEEKIIAYSSIAAKNAELEQ--ELMEKNEKIRS---LES 621
Cdd:TIGR01612 1191 EIKKLLNEIAEIEKDKTSleevkginlsygKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDldEIKEKSPEIENemgIEM 1270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 622 NINTEHEKICFAFEKAKKIHLEQHKEmEKQIEQLETQLEKRDQQFKEQEKTMSI---LQQDILCKQHHLESLDRLLTE-- 696
Cdd:TIGR01612 1271 DIKAEMETFNISHDDDKDHHIISKKH-DENISDIREKSLKIIEDFSEESDINDIkkeLQKNLLDAQKHNSDINLYLNEia 1349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 697 ---------------SKVEMEKENMKKDEALKALQIHVSEETIKVRQLDSALEICKEELALHLNqlerNKEKFERQLKKK 761
Cdd:TIGR01612 1350 niynilklnkikkiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLEECKSKIESTLD----DKDIDECIKKIK 1425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 762 SEEVYCLQKELKIKTH--NLEETSEqNAILQHTLQQQQQMLQQETMRNGELEDTQS--------KLEKQVSKQEQELQKQ 831
Cdd:TIGR01612 1426 ELKNHILSEESNIDTYfkNADENNE-NVLLLFKNIEMADNKSQHILKIKKDNATNDhdfninelKEHIDKSKGCKDEADK 1504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 832 RESSTEKLRKMEEKYETAIREVdLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQ 911
Cdd:TIGR01612 1505 NAKAIEKNKELFEQYKKDVTEL-LNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIED 1583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 912 TKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQnahgELKSTLRQLQELRDVLQKAQLSLE-EKYTTIKDLT 990
Cdd:TIGR01612 1584 DAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLK----ETESIEKKISSFSIDSQDTELKENgDNLNSLQEFL 1659
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 991 AELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQ-----VTHLDMTIREHRGEMEQKIIKLEGTLEK-------SEL 1058
Cdd:TIGR01612 1660 ESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNyeigiIEKIKEIAIANKEEIESIKELIEPTIENlissfntNDL 1739
|
650 660 670
....*....|....*....|....*....|
gi 568936279 1059 ELKECNKQVESLNEKLQNAKEQLREKEFIM 1088
Cdd:TIGR01612 1740 EGIDPNEKLEEYNTEIGDIYEEFIELYNII 1769
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
526-995 |
5.90e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 526 EELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAEL 605
Cdd:PRK02224 247 EERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 606 EQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHlEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQ------- 678
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEAESLREDADDLEERAEELR-EEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdapv 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 679 DILCKQHHLESL---------DRLLTESKVEMEKENMKKDEALKAL------------QIHV---SEETIKVRQLDSALE 734
Cdd:PRK02224 406 DLGNAEDFLEELreerdelreREAELEATLRTARERVEEAEALLEAgkcpecgqpvegSPHVetiEEDRERVEELEAELE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 735 ICKEELALHLNQLERNKE--KFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELED 812
Cdd:PRK02224 486 DLEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 813 TQSKLEKQVSKQEQELQ--KQRESSTEKLRKMEEKYETAIREVDLKRQKiieltgtaRQAKLEM-DQYKEELSKmekeii 889
Cdd:PRK02224 566 EAEEAREEVAELNSKLAelKERIESLERIRTLLAAIADAEDEIERLREK--------REALAELnDERRERLAE------ 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 890 hlkrdgenKSMQLSQLDMVLDQTKteLEKTTNSVKELERLQHHTETELTETMQKREalenELQNAHGELKSTLRQLQELR 969
Cdd:PRK02224 632 --------KRERKRELEAEFDEAR--IEEAREDKERAEEYLEQVEEKLDELREERD----DLQAEIGAVENELEELEELR 697
|
490 500 510
....*....|....*....|....*....|....*.
gi 568936279 970 D---VLQKAQLSLEEKY-------TTIKDLTAELRE 995
Cdd:PRK02224 698 ErreALENRVEALEALYdeaeeleSMYGDLRAELRQ 733
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
207-763 |
6.21e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 6.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 207 IEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALynAEELSKAFQLYK--EKVAEKLEKVQDEEEILERNLSNCE 284
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL--REELEKLEKEVKelEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 285 KENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMIMAMKN------SEVMSQLTESRQCILKLERELEDKDEIVR 358
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEeyldelREIEKRLSRLEEEINGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 359 EKFSLLNENRELKVRVATQNERLELcQQDIDNSRVELKSLEKLITqiPLKREIVGFRSSLCKHQRSSVSDKEDKCIGcce 438
Cdd:PRK03918 339 RLEELKKKLKELEKRLEELEERHEL-YEEAKAKKEELERLKKRLT--GLTPEKLEKELEELEKAKEEIEEEISKITA--- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 439 anklMISELRIKLAIREAEIQKLHANLTVNQLsqnvandsqeCGKVNTlETEPVKLGGSQVESIKDgdqqtvnkqYEREK 518
Cdd:PRK03918 413 ----RIGELKKEIKELKKAIEELKKAKGKCPV----------CGRELT-EEHRKELLEEYTAELKR---------IEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 519 QRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEmTKKCSQLLILEKQLEEKIIAYSSI 598
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK-AEEYEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 599 AAKNAELEQELMEKNEKIRSLESNINTEHEKIcfafekaKKIHLEQHKEMEKQIEQLET------QLEKRDQQFKEQEKT 672
Cdd:PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKEL-------EELGFESVEELEERLKELEPfyneylELKDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 673 MSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKAlqiHVSEETIKVRQLDSALEICKEELALHLNQLERNKE 752
Cdd:PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE---ELREEYLELSRELAGLRAELEELEKRREEIKKTLE 697
|
570
....*....|.
gi 568936279 753 KFERQLKKKSE 763
Cdd:PRK03918 698 KLKEELEEREK 708
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1101-1287 |
7.00e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1101 EIERTQQRMKEMESVIKEQEDYIATQYkevidlgqeLRLTQEQmqNTHSELVEARRQEVQAQREierlageledikQLSK 1180
Cdd:COG3096 247 AIRVTQSDRDLFKHLITEATNYVAADY---------MRHANER--RELSERALELRRELFGARR------------QLAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1181 EKEAHgNRLAEELGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQIEMisHQENHAKWKLSAESQKTSVQQLNEQLEKA 1260
Cdd:COG3096 304 EQYRL-VEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKIER--YQEDLEELTERLEEQEEVVEEAAEQLAEA 380
|
170 180
....*....|....*....|....*..
gi 568936279 1261 KQELEEAQDTVSNLHQQVQDRNEVIEA 1287
Cdd:COG3096 381 EARLEAAEEEVDSLKSQLADYQQALDV 407
|
|
| CHD5 |
pfam04420 |
CHD5-like protein; Members of this family are probably coiled-coil proteins that are similar ... |
1209-1272 |
7.37e-04 |
|
CHD5-like protein; Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. In Saccharomyces cerevisiae this protein localizes to the ER and is thought to play a homeostatic role.
Pssm-ID: 427938 Cd Length: 158 Bit Score: 41.79 E-value: 7.37e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568936279 1209 AEIKKLSSEVDSLKEayqiEM--ISHQENHAKW-KLsaesqKTSVQQLNEQLEKAKQELEEAQDTVS 1272
Cdd:pfam04420 38 KEQRKLKAEILKLKE----ELnaTSAQDEFAKWaKL-----NRKHDKLLEELEKLKKSLSSAKSSFD 95
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
779-1184 |
7.53e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 7.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 779 LEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDlkrq 858
Cdd:pfam07888 36 LEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE---- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 859 kiieltgtarqaklEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMvldQTKTELEKTTNSVKELERLQHHTETElt 938
Cdd:pfam07888 112 --------------ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVL---ERETELERMKERAKKAGAQRKEEEAE-- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 939 etmqkREALENELQNAHGELKSTLRQLQELRDvlqkaqlSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERN 1018
Cdd:pfam07888 173 -----RKQLQAKLQQTEEELRSLSKEFQELRN-------SLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1019 wELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQeisQL 1098
Cdd:pfam07888 241 -SLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAE---AD 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1099 KKEIERTQQRMKEMESVIKEQEdyiATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQL 1178
Cdd:pfam07888 317 KDRIEKLSAELQRLEERLQEER---MEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEY 393
|
....*.
gi 568936279 1179 SKEKEA 1184
Cdd:pfam07888 394 IRQLEQ 399
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
732-1113 |
7.80e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 7.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 732 ALEICKEELALHLNQLERNKEKFERQLKKKSeevycLQKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELE 811
Cdd:COG4717 106 ELEAELEELREELEKLEKLLQLLPLYQELEA-----LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 812 DTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHL 891
Cdd:COG4717 181 ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 892 KRDGENKSMQLSQ---------------LDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHG 956
Cdd:COG4717 261 LLGLGGSLLSLILtiagvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 957 ELKSTLRQLQELRDVLQKAQLSLEEKYtTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIR 1036
Cdd:COG4717 341 ELLDRIEELQELLREAEELEEELQLEE-LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELE 419
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568936279 1037 EHRGEMEQKIIKLEgtLEKSELELKECNKQVESLNEKLQNAKEQLREkefimLQNEQEISQLKKEIERTQQRMKEME 1113
Cdd:COG4717 420 ELLEALDEEELEEE--LEELEEELEELEEELEELREELAELEAELEQ-----LEEDGELAELLQELEELKAELRELA 489
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1042-1364 |
8.19e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 8.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1042 MEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQED 1121
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1122 YIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEELGASQVREA 1201
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1202 HLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDR 1281
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1282 NEVIEAANEALLIKESELTRLQAKISGHEKTEDTKYLPAPFTTLTEIIPDSQHPNFAKHSQISLFKCRKLRRSISASDLS 1361
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLV 348
|
...
gi 568936279 1362 FKS 1364
Cdd:COG4372 349 GLL 351
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
939-1180 |
8.44e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 939 ETMQKREALENELQNAHGELKSTLRQLQELRDVLQKaqlsLEEKYTTIKDLTAELRECKMEIED-KKQELIEMDQAL-KE 1016
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEE----TEQLKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLsTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1017 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQN---AKEQLREKEFIMLQNEQ 1093
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGgkvGGKALRPSQRVLLQAEQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1094 -----EISQLKKEIERTQQrmkeMESVIKEQEDYIATQYKEvidLGQELRLTQEQMQNTHSELVEARRQEVQAQREIER- 1167
Cdd:PRK11281 202 allnaQNDLQRKSLEGNTQ----LQDLLQKQRDYLTARIQR---LEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARi 274
|
250
....*....|....*...
gi 568936279 1168 -----LAGELEDIKQLSK 1180
Cdd:PRK11281 275 qanplVAQELEINLQLSQ 292
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
95-322 |
1.03e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.74 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 95 TDYQKKSRDQVSFSSVSMDQEVKNLReklHKLRQQNACLVTQNHSLMTKIESVHFELTQSKAKIAMLesaQEQAANIPIL 174
Cdd:PLN02939 182 TDARIKLAAQEKIHVEILEEQLEKLR---NELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFL---KAELIEVAET 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 175 EEQIINLEAEVSAQDKVLREAEDKLEQSQKMVIEkehsLQEAKEECIKLKVDLLEQ--SKQGKRAER-----QRNEALYN 247
Cdd:PLN02939 256 EERVFKLEKERSLLDASLRELESKFIVAQEDVSK----LSPLQYDCWWEKVENLQDllDRATNQVEKaalvlDQNQDLRD 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568936279 248 A----EELSKAFQLYKEKvAEKLEKVQDEEEILERNLSNCEKEnkrLQEKCNLYKSELEILKEKFRELKEEhySGKEKL 322
Cdd:PLN02939 332 KvdklEASLKEANVSKFS-SYKVELLQQKLKLLEERLQASDHE---IHSYIQLYQESIKEFQDTLSKLKEE--SKKRSL 404
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1092-1321 |
1.26e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1092 EQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGE 1171
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1172 LedikqlsKEKEAHGNRLAEELGASQVREA--------HLEARMQAEIKKLSSEVDSLKEAyqiemishqenhakwKLSA 1243
Cdd:COG3883 95 L-------YRSGGSVSYLDVLLGSESFSDFldrlsalsKIADADADLLEELKADKAELEAK---------------KAEL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1244 ESQKTSVQQLNEQLEKAKQELE----EAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGHEKTEDTKYLP 1319
Cdd:COG3883 153 EAKLAELEALKAELEAAKAELEaqqaEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
..
gi 568936279 1320 AP 1321
Cdd:COG3883 233 AA 234
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
20-399 |
1.30e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 20 LLANVASLRHELKITEWSLHNLGEELSSVSPSENSEYVCSPSRSERLILEELTQPSHLGRLIYPPYKKVCKTSDSTDYQK 99
Cdd:pfam15921 322 LESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 100 KSRDQVSFSSVSMDQ----------EVKNLREKLHKLR--------QQNACLVTQNHSLmTKIESVHFELTQSK------ 155
Cdd:pfam15921 402 RLWDRDTGNSITIDHlrrelddrnmEVQRLEALLKAMKsecqgqmeRQMAAIQGKNESL-EKVSSLTAQLESTKemlrkv 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 156 -----AKIAMLESAQEQAANIPI-LEEQIINLEAEVSAQDKVLREAEDKLEQSQKMVIEKEHsLQEAKEECIKLKVDLLE 229
Cdd:pfam15921 481 veeltAKKMTLESSERTVSDLTAsLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTECEALKLQMAE 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 230 QSKQGKRAERQrneaLYNAEELSKafQLYKEKVAEKLEKVQDEEEILERNLSncEKENKRLQEKCNLYKSELEilkEKFR 309
Cdd:pfam15921 560 KDKVIEILRQQ----IENMTQLVG--QHGRTAGAMQVEKAQLEKEINDRRLE--LQEFKILKDKKDAKIRELE---ARVS 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 310 ELKEEHY----SGKEKLMIMAMKNSEVMSQLTESRQCILKLERELEDKdEIVREKFSllNENRELKVRVATQNERLELCQ 385
Cdd:pfam15921 629 DLELEKVklvnAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY-EVLKRNFR--NKSEEMETTTNKLKMQLKSAQ 705
|
410
....*....|....
gi 568936279 386 QDIDNSRVELKSLE 399
Cdd:pfam15921 706 SELEQTRNTLKSME 719
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
525-702 |
1.73e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 525 IEELRAKLTQIEAENSDLKV--NMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLILEKQLEEKIIA-------- 594
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDAlpellqsp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 595 -YSSIAAKNAELEQELMEK--------------NEKIRSLESNINTEHEKICFAFEKAKKIHLEQHKEMEKQIEQLETQL 659
Cdd:COG3206 264 vIQQLRAQLAELEAELAELsarytpnhpdvialRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL 343
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568936279 660 ekrdQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEME 702
Cdd:COG3206 344 ----AELPELEAELRRLEREVEVARELYESLLQRLEEARLAEA 382
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
810-1051 |
1.83e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 810 LEDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREvdlkrqkiieltgtARQAKLEMDQYKEELSKMEKEIi 889
Cdd:PHA02562 186 LDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEE--------------AKTIKAEIEELTDELLNLVMDI- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 890 hlkrdgENKSMQLSQLDMVLDQTKTELEKTTNSVKelerlQHHTETELTETMQKREALENELQNAHGELKstlrQLQELR 969
Cdd:PHA02562 251 ------EDPSAALNKLNTAAAKIKSKIEQFQKVIK-----MYEKGGVCPTCTQQISEGPDRITKIKDKLK----ELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 970 DVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKL 1049
Cdd:PHA02562 316 EKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395
|
..
gi 568936279 1050 EG 1051
Cdd:PHA02562 396 SE 397
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
901-1263 |
1.95e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.36 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 901 QLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE 980
Cdd:pfam19220 28 DFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 981 EKYTTIKDLTAELRECKMEIED---KKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSE 1057
Cdd:pfam19220 108 ELRIELRDKTAQAEALERQLAAeteQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQA 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1058 LELKECNKQVESLNEKLQNAKEQLREKE--FIMLQNEQE--ISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDL 1133
Cdd:pfam19220 188 AELAELTRRLAELETQLDATRARLRALEgqLAAEQAEREraEAQLEEAVEAHRAERASLRMKLEALTARAAATEQLLAEA 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1134 GQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEdikqlskekeahgnRLAEELGASQVREAHLEARMQAEIKK 1213
Cdd:pfam19220 268 RNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLE--------------RRTQQFQEMQRARAELEERAEMLTKA 333
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 568936279 1214 LSSEVDSLKEAYQ-IEMISHQENHAKWKLSAESQ--KTSVQQLNEQLEKAKQE 1263
Cdd:pfam19220 334 LAAKDAALERAEErIASLSDRIAELTKRFEVERAalEQANRRLKEELQRERAE 386
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
582-765 |
2.00e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 582 LILEKQLEEKIIAYSSIAA---KNAELEQELMEKNEKIRSLESNINTEHEkicfaFEKAKKIHLEQHKEMEKQIEQLETQ 658
Cdd:PRK12704 23 FVRKKIAEAKIKEAEEEAKrilEEAKKEAEAIKKEALLEAKEEIHKLRNE-----FEKELRERRNELQKLEKRLLQKEEN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 659 LEKRDQQFKEQEKTMSILQQDILCKQHHLE----SLDRLLTESKVEMEK-ENMKKDEAlkalqihvseetiKVRQLDSAL 733
Cdd:PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEkkeeELEELIEEQLQELERiSGLTAEEA-------------KEILLEKVE 164
|
170 180 190
....*....|....*....|....*....|..
gi 568936279 734 EICKEELALHLNQLErnkEKFERQLKKKSEEV 765
Cdd:PRK12704 165 EEARHEAAVLIKEIE---EEAKEEADKKAKEI 193
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
150-1086 |
2.18e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 150 ELTQSKAKIAMLESAQEQAANIpilEEQIINLEAEVSAQDKVLREAEDKLEQSQKMVIEKEH---SLQEAKEECIKLKVD 226
Cdd:TIGR00606 201 KVQEHQMELKYLKQYKEKACEI---RDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHnlsKIMKLDNEIKALKSR 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 227 LLEQSKQGKRAERQRNEALYNA-EELSKAFQLYKEKVAEKLEKVQDEEEILERNlsncEKENKRLQEKcnlyKSELEILK 305
Cdd:TIGR00606 278 KKQMEKDNSELELKMEKVFQGTdEQLNDLYHNHQRTVREKERELVDCQRELEKL----NKERRLLNQE----KTELLVEQ 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 306 EKFRELKEEHYSGKEKlmimamKNSEVMSQLTESRQCILK----LERELEDKDEIVREKFSllNENRELKVRVATQNERL 381
Cdd:TIGR00606 350 GRLQLQADRHQEHIRA------RDSLIQSLATRLELDGFErgpfSERQIKNFHTLVIERQE--DEAKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 382 ELCQQDIDNSRVELKSLEKLITqipLKREIVGFRSSLCKHQRSSVSDkedkcigcCEANKLMISELRIKLAIREAEIQKL 461
Cdd:TIGR00606 422 RLKQEQADEIRDEKKGLGRTIE---LKKEILEKKQEELKFVIKELQQ--------LEGSSDRILELDQELRKAERELSKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 462 HANLTVNQLSQNV---ANDSQECGKVNTLETEPVKLGGSQVESIKDGDQQTVNK--QYEREKQRLATGIEELRAKL---- 532
Cdd:TIGR00606 491 EKNSLTETLKKEVkslQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKmdKDEQIRKIKSRHSDELTSLLgyfp 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 533 --TQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNASKLENEMTKKCSQLLilekQLEEKIIAYSSIAAKNAELE--QE 608
Cdd:TIGR00606 571 nkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLS----SYEDKLFDVCGSQDEESDLErlKE 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 609 LMEKNEKIRSLESnintehekicfafekAKKIHLEQHKEMEKQIEQLETQLEKRD-QQFKEQEKTMSILQQDILCKQHHL 687
Cdd:TIGR00606 647 EIEKSSKQRAMLA---------------GATAVYSQFITQLTDENQSCCPVCQRVfQTEAELQEFISDLQSKLRLAPDKL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 688 ESLDRLLteSKVEMEKENMKKDEALKALQIHVSEETIKvrQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYC 767
Cdd:TIGR00606 712 KSTESEL--KKKEKRRDEMLGLAPGRQSIIDLKEKEIP--ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 768 LQKELKIKTHNLE-ETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEqELQKQRESSTEKLRKMEEKY 846
Cdd:TIGR00606 788 LTDVTIMERFQMElKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE-LNRKLIQDQQEQIQHLKSKT 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 847 EtairevDLKRQKIIELTGTARQAKLEmdqykEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSvkel 926
Cdd:TIGR00606 867 N------ELKSEKLQIGTNLQRRQQFE-----EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS---- 931
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 927 erlqhhTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKaqlsleEKYTTIKDLTAELRECKMEIEDKKQE 1006
Cdd:TIGR00606 932 ------KETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLK------QKETELNTVNAQLEECEKHQEKINED 999
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1007 LIEMDQALK---------ERNWELKQRAAQVTHLDMTIREHRGEMEQKII--------KLEGTLEKSELELKECNKQVES 1069
Cdd:TIGR00606 1000 MRLMRQDIDtqkiqerwlQDNLTLRKRENELKEVEEELKQHLKEMGQMQVlqmkqehqKLEENIDLIKRNHVLALGRQKG 1079
|
970
....*....|....*..
gi 568936279 1070 LNEKLQNAKEQLREKEF 1086
Cdd:TIGR00606 1080 YEKEIKHFKKELREPQF 1096
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
936-1267 |
2.48e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 936 ELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALK 1015
Cdd:COG4372 32 QLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1016 ERNWELKQRAAQVTHLD---MTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNE 1092
Cdd:COG4372 112 ELQEELEELQKERQDLEqqrKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1093 QEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGEL 1172
Cdd:COG4372 192 ANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEK 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1173 EDIKQLSKEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQ 1252
Cdd:COG4372 272 DTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLL 351
|
330
....*....|....*
gi 568936279 1253 LNEQLEKAKQELEEA 1267
Cdd:COG4372 352 DNDVLELLSKGAEAG 366
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1148-1280 |
2.58e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1148 HSELVEARRQEVQAQReierlagelediKQLSKEKEAHgNRLAEELGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQI 1227
Cdd:PRK04863 284 HLEEALELRRELYTSR------------RQLAAEQYRL-VEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKI 350
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 568936279 1228 EMisHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQD 1280
Cdd:PRK04863 351 ER--YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD 401
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
973-1130 |
2.69e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 973 QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRgemeQKIIKLEGT 1052
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVE----ARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1053 LE--KSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEV 1130
Cdd:COG1579 82 LGnvRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1041-1120 |
2.81e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1041 EMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEfimlqnEQEISQLKKEIERTQQRMKEME----SVI 1116
Cdd:PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA------QQAIKEAKKEADEIIKELRQLQkggyASV 604
|
....
gi 568936279 1117 KEQE 1120
Cdd:PRK00409 605 KAHE 608
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
650-880 |
2.84e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 650 KQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLteskVEMEKENMKKDEALKALQIHVSEETIKVRQL 729
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI----AALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 730 DSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQ-NAILQHTLQQQQQMLQQETMRng 808
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaEELRADLAELAALRAELEAER-- 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568936279 809 eleDTQSKLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEE 880
Cdd:COG4942 174 ---AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1067-1193 |
3.05e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1067 VESLNEKLQNAKEQLREKEFIMLQNE-----QEISQLKKEIERTQQRMKEMESVIKEQEDYIAtqykeviDLGQELRLTQ 1141
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERElteeeEEIRRLEEQVERLEAEVEELEAELEEKDERIE-------RLERELSEAR 454
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568936279 1142 EQmqnthselveaRRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEEL 1193
Cdd:COG2433 455 SE-----------ERREIRKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
913-1028 |
3.07e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 913 KTELEKTTNSVKELERlqhhtetELTETMQKREALENELQNAHGELKSTLR-QLQELRDVLQKaqlsLEEKYTTIKDLTA 991
Cdd:COG0542 403 RMEIDSKPEELDELER-------RLEQLEIEKEALKKEQDEASFERLAELRdELAELEEELEA----LKARWEAEKELIE 471
|
90 100 110
....*....|....*....|....*....|....*..
gi 568936279 992 ELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQV 1028
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEELAELAPLL 508
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
875-1291 |
3.69e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 41.55 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 875 DQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVK--ELERLQHHTETELT----ETMQK----- 943
Cdd:pfam05701 38 KLVELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIEELKLNLEraQTEEAQAKQDSELAklrvEEMEQgiade 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 944 -REALENELQNAHGELKSTLRQLQELRDVLQKAQ----LSLEEKYTTIK---DLTAELRECKMEIEDKKQELIEMDQALK 1015
Cdd:pfam05701 118 aSVAAKAQLEVAKARHAAAVAELKSVKEELESLRkeyaSLVSERDIAIKraeEAVSASKEIEKTVEELTIELIATKESLE 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1016 ernwelkqrAAQVTHLDMTIREHRGEM--EQKIIKLEGTLEKSELELKECNKQVESLNE----------KLQNAKEQLRE 1083
Cdd:pfam05701 198 ---------SAHAAHLEAEEHRIGAALarEQDKLNWEKELKQAEEELQRLNQQLLSAKDlkskletasaLLLDLKAELAA 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1084 KEFIMLQNEQEISQLKKEIERTQQRMkeMESVIKEQEDYIATQYK---EVIDLGQELRLTQEQMQNTHSELVEARRQEVQ 1160
Cdd:pfam05701 269 YMESKLKEEADGEGNEKKTSTSIQAA--LASAKKELEEVKANIEKakdEVNCLRVAAASLRSELEKEKAELASLRQREGM 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1161 AQREIERLAGELedikqlskekeahgNRLAEELGASQVREAHLEARMqAEIKKLssevdsLKEAYQiemishqenhakwk 1240
Cdd:pfam05701 347 ASIAVSSLEAEL--------------NRTKSEIALVQAKEKEAREKM-VELPKQ------LQQAAQ-------------- 391
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 568936279 1241 lSAESQKTSVQQLNEQLEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEA 1291
Cdd:pfam05701 392 -EAEEAKSLAQAAREELRKAKEEAEQAKAAASTVESRLEAVLKEIEAAKAS 441
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
751-931 |
4.00e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 751 KEKFERQLKKKSEEVyclqKELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQE---QE 827
Cdd:COG2433 349 KNKFERVEKKVPPDV----DRDEVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEeqvER 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 828 LQKQRESSTEKLRKMEEKYETAIREVDLKRQKiieltgtaRQAKLEMDqykEELSKMEKEIIHLKRdgenksmQLSQLDM 907
Cdd:COG2433 425 LEAEVEELEAELEEKDERIERLERELSEARSE--------ERREIRKD---REISRLDREIERLER-------ELEEERE 486
|
170 180
....*....|....*....|....
gi 568936279 908 VLDQTKTELEKTtnsvKELERLQH 931
Cdd:COG2433 487 RIEELKRKLERL----KELWKLEH 506
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
806-1303 |
4.51e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.66 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 806 RNGELEDTQ--SKLEKQVSKQEQELQK-QRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELS 882
Cdd:pfam07111 51 RSLELEGSQalSQQAELISRQLQELRRlEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMV 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 883 KMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTET-------ELTETMQKREALENELQNAH 955
Cdd:pfam07111 131 RKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLETkrageakQLAEAQKEAELLRKQLSKTQ 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 956 GELKSTLRQLQELRDVL----------QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRA 1025
Cdd:pfam07111 211 EELEAQVTLVESLRKYVgeqvppevhsQTWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKI 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1026 AQVTHLD----MTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVESLNEKLQNaKEQLREKEFIMLQNEQEISQLKKE 1101
Cdd:pfam07111 291 QPSDSLEpefpKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQE-QVTSQSQEQAILQRALQDKAAEVE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1102 IERTQQRMKEME-----SVIKEQEDYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIK 1176
Cdd:pfam07111 370 VERMSAKGLQMElsraqEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIK 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1177 QLSKEKEAHGnRLAEELGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKtsvQQLNEQ 1256
Cdd:pfam07111 450 GLMARKVALA-QLRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAER---QQLSEV 525
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568936279 1257 LEKAKQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQ 1303
Cdd:pfam07111 526 AQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQ 572
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
636-1304 |
5.03e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 636 KAKKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKAL 715
Cdd:TIGR00606 241 KSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 716 QIHVSEETIKVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQKELKIKTHNLEETSEQNaILQHTLQQ 795
Cdd:TIGR00606 321 LVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQ-IKNFHTLV 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 796 QQQMLQQETMRNGELEDTQSKlEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTAR---QAKL 872
Cdd:TIGR00606 400 IERQEDEAKTAAQLCADLQSK-ERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDrilELDQ 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 873 EMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDmvLDQTKTELEKttnsvkELERLQHHTETELTETMQKREALENELQ 952
Cdd:TIGR00606 479 ELRKAERELSKAEKNSLTETLKKEVKSLQNEKAD--LDRKLRKLDQ------EMEQLNHHTTTRTQMEMLTKDKMDKDEQ 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 953 NAHGELKSTLRQLQELRDVLQKAQLSleekyTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLD 1032
Cdd:TIGR00606 551 IRKIKSRHSDELTSLLGYFPNKKQLE-----DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1033 MTIREHRGEMEqkiikLEGTLEKSELELKECNKQVESLNEKlQNAKEQLREkefimlQNEQEISQLKKEIERTQQRMKEM 1112
Cdd:TIGR00606 626 DKLFDVCGSQD-----EESDLERLKEEIEKSSKQRAMLAGA-TAVYSQFIT------QLTDENQSCCPVCQRVFQTEAEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1113 ESVIKeqedyiatqykeviDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEE 1192
Cdd:TIGR00606 694 QEFIS--------------DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRD 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1193 LGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKAKQELEEAQDTVS 1272
Cdd:TIGR00606 760 IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELD 839
|
650 660 670
....*....|....*....|....*....|..
gi 568936279 1273 NLHQQVQDRNEVIEAANEALLIKESELTRLQA 1304
Cdd:TIGR00606 840 TVVSKIELNRKLIQDQQEQIQHLKSKTNELKS 871
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
932-1108 |
6.04e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 932 HTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELIEMD 1011
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1012 QALKERNW------------------------------------ELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEK 1055
Cdd:COG3883 93 RALYRSGGsvsyldvllgsesfsdfldrlsalskiadadadlleELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568936279 1056 SELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQR 1108
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
912-1124 |
6.75e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 40.78 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 912 TKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQnahGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTA 991
Cdd:pfam05667 301 THTEKLQFTNEAPAATSSPPTKVETEEELQQQREEELEELQ---EQLEDLESSIQELEKEIKKLESSIKQVEEELEELKE 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 992 ELRECKMEIEDKKQELIEMDQA---LKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQVE 1068
Cdd:pfam05667 378 QNEELEKQYKVKKKTLDLLPDAeenIAKLQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEAKSNKEDESQRKLEEIK 457
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568936279 1069 SLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQ--QRMKEMESVIKEQEDYIA 1124
Cdd:pfam05667 458 ELREKIKEVAEEAKQKEELYKQLVAEYERLPKDVSRSAytRRILEIVKNIKKQKEEIT 515
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1068-1311 |
7.07e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1068 ESLNEKLQNAKEQLREKEFIMLQNEQ---EISQLKKEIERTQQRMKEME---SVIKEQEDYIATQYKEVIDLGQE----- 1136
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEkarEVERRRKLEEAEKARQAEMDrqaAIYAEQERMAMERERELERIRQEerkre 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1137 -LRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDI-KQLSKEKEAHGNRLAEELGASQVREAHLEARmQAEIKKL 1214
Cdd:pfam17380 362 lERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAArKVKILEEERQRKIQQQKVEMEQIRAEQEEAR-QREVRRL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1215 SSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLnEQLEKAKQELEEAQDTVsnLHQQVQDRNEVIEAANEALLI 1294
Cdd:pfam17380 441 EEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLEL-EKEKRDRKRAEEQRRKI--LEKELEERKQAMIEEERKRKL 517
|
250
....*....|....*..
gi 568936279 1295 KESELTRLQAKISGHEK 1311
Cdd:pfam17380 518 LEKEMEERQKAIYEEER 534
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
814-981 |
7.52e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 40.45 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 814 QSKLEKQVSKQEQelQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTG-----TARQAKLEmDQYKEELSKMEKEI 888
Cdd:PRK11637 54 QDIAAKEKSVRQQ--QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKqidelNASIAKLE-QQQAAQERLLAAQL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 889 IHLKRDGENKSMQL-----------------SQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENEL 951
Cdd:PRK11637 131 DAAFRQGEHTGLQLilsgeesqrgerilayfGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKL 210
|
170 180 190
....*....|....*....|....*....|
gi 568936279 952 QNAHGELKSTLRQLQelrDVLQKAQLSLEE 981
Cdd:PRK11637 211 EQARNERKKTLTGLE---SSLQKDQQQLSE 237
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
816-1192 |
7.92e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 816 KLEKQVSKQEQELQKQRESSTEKLRKMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDG 895
Cdd:COG4372 3 RLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 896 ENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKA 975
Cdd:COG4372 83 EELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 976 QLSLEEkyttikdltAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEK 1055
Cdd:COG4372 163 QEELAA---------LEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568936279 1056 SELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQEDYIATQYKEVIDLGQ 1135
Cdd:COG4372 234 ALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGAL 313
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568936279 1136 ELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLAEE 1192
Cdd:COG4372 314 EDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| |
