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Conserved domains on  [gi|568245794|gb|AHD24878|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Myzomela jugularis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.32e-163

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.29  E-value: 3.32e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 TGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAVL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 568245794 321 TGISIAILTSLSITLLPLAPMLFIMP 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.32e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.29  E-value: 3.32e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 TGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAVL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 568245794 321 TGISIAILTSLSITLLPLAPMLFIMP 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.31e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.84  E-value: 1.31e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   23 SNHWAMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   91 HPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLA-TAMKLPPIAL-----LYLTSHSLDSTLLTTMAVLSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  165 GGWVGLNQTQIRKILAFSSIAHLGWMAIIIS----YSPKLTLLNFYLYSLVTAAVFL-----TLDTTKTLKLSTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 568245794  236 KTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-270 2.22e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 2.22e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   8 IFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALILF-SSMTNAWhTGQWD 85
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  86 LTQLTHPTS------------CLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLY------LTSH 147
Cdd:COG1007  185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveaFPGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 148 SLD-STLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI-IISYSPK-LTLLNFYL--YSLVTAAVFLTL--- 219
Cdd:COG1007  265 AADwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlll 344

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568245794 220 --DTTKTLKLSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQEL 270
Cdd:COG1007  345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-297 3.04e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.38  E-value: 3.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794    8 IFTLSL--LLGTTITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQW 84
Cdd:TIGR01770 104 FYILLLfaLLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   85 DLTQLTHPTSCLILT------------AALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALL-------YLT 145
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  146 SHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLN--FYL--YSLVTAAVFLTLDT 221
Cdd:TIGR01770 264 FSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  222 TKTLK------LSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLR 295
Cdd:TIGR01770 344 LRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423


                  ..
gi 568245794  296 LA 297
Cdd:TIGR01770 424 VV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.32e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.29  E-value: 3.32e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 TGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAVL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 568245794 321 TGISIAILTSLSITLLPLAPMLFIMP 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 1.43e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 384.27  E-value: 1.43e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 TGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAVL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 568245794 321 TGISIAILTSLSITLLPLAPMLFIM 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-345 2.11e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 383.77  E-value: 2.11e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 TGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSlDSTLLTTMAVL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*.
gi 568245794 321 -TGISIAILTSLSITLLPLAPMLFIM 345
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 8.29e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 344.14  E-value: 8.29e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 TGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAVL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWR-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*..
gi 568245794 319 KPTGISIAILTSLSITLLPLAPMLFIM 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 2.44e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 302.27  E-value: 2.44e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 TGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAVL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 568245794 321 TGISIAILTSLSITLLPLAPMLFIMP 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-341 6.53e-84

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 257.94  E-value: 6.53e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 TGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAVL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330       340
                 ....*....|....*....|..
gi 568245794 321 TGISIAILTSLS-ITLLPLAPM 341
Cdd:MTH00041 321 ITVYGVILSILSsISILGLLLI 342
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 7.61e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 190.42  E-value: 7.61e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   1 MNPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  81 tgqwdLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPialLYLTSHSLDSTLLTTMAVL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 161 SAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 568245794 321 TgISIAILTSLSITLLPLAPMLFIM 345
Cdd:MTH00160 312 S-LILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 4-302 3.11e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.06  E-value: 3.11e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   4 LAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQ 83
Cdd:MTH00144   4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  84 WDLTqlthptscLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALL-YLTSHSLDSTLLTTMAVLSA 162
Cdd:MTH00144  84 WFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 163 ALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLdTTKTLKLSTLMTSWTKTPVLNT 242
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGL 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 243 ALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 4.73e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 159.56  E-value: 4.73e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   7 LIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSmtnawhTGQWDL 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  87 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAVLSAALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 167 WVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVLNTALLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 247 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYcTTITLPPHTTNhmkqwRTNKPTGISIA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                        330
                 ....*....|....
gi 568245794 327 ILTSLSITLLPLAP 340
Cdd:MTH00011 317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 1.54e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 144.81  E-value: 1.54e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   8 IFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAwhtgqwdLT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  88 QLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDstLLTTMAVLSAALGGW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFM--GLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 168 VGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTLDTTKTLKLSTLMTSWTKTPVLNTALLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 568245794 248 LLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 1.14e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 97.41  E-value: 1.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  13 LLLGTTITISSNHWAMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALILFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  79 WHTGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYltSHSLDSTLLTTMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 159 VLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI------IISYSPKLTLLNFYLY-SLVTAAVFLTLDTTKTL--KLST 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWgieigsFESIQASLVYLFIYIImSICVFSIILALNVYKNLiiEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 568245794 230 LMTswtKTPVLNTALLLTLLSLAGLPPLTGFLPKWFIL 267
Cdd:MTH00196 240 LSR---RLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.31e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.84  E-value: 1.31e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   23 SNHWAMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   91 HPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLA-TAMKLPPIAL-----LYLTSHSLDSTLLTTMAVLSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  165 GGWVGLNQTQIRKILAFSSIAHLGWMAIIIS----YSPKLTLLNFYLYSLVTAAVFL-----TLDTTKTLKLSTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 568245794  236 KTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-270 2.22e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 2.22e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   8 IFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALILF-SSMTNAWhTGQWD 85
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  86 LTQLTHPTS------------CLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLY------LTSH 147
Cdd:COG1007  185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveaFPGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 148 SLD-STLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI-IISYSPK-LTLLNFYL--YSLVTAAVFLTL--- 219
Cdd:COG1007  265 AADwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlll 344

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568245794 220 --DTTKTLKLSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQEL 270
Cdd:COG1007  345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.67e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 1.67e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   8 IFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  87 ----TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATamkLPPIALLY-LTSHSLDSTLLTTMAVLS 161
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLAT---VPKIGVFSiLVQIGPVTNVVLICAVLS 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 162 AALGGWVGLNQTQIRKILAFSSIAHLGW----MAIIISYSPKLTLLNFYLYSLVTAAVF---LTLDTTKTLKLSTLMTSw 234
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS- 336

                        250       260       270
                 ....*....|....*....|....*....|...
gi 568245794 235 TKTPVLNTALLLTLLSLAGLPPLTGFLPKWFIL 267
Cdd:MTH00199 337 RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-296 1.03e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 89.88  E-value: 1.03e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   9 FTLSLL--LGTTITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALIL-------------- 71
Cdd:PRK05777 106 YLLVLFalLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsls 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  72 FSSMTNAWHTGQWDLTQLThpTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIA----LLYLTSH 147
Cdd:PRK05777 186 FAGIAKALADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 148 SLD---STLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWM--AIIISYSPKLTLLNFYL--YSLVTAAVF--LT 218
Cdd:PRK05777 264 GLSedwQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFgvIS 343

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 219 LDTTKTLKLSTLmTSWT----KTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYL 294
Cdd:PRK05777 344 LLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422


                 ..
gi 568245794 295 RL 296
Cdd:PRK05777 423 RV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-297 3.04e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.38  E-value: 3.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794    8 IFTLSL--LLGTTITISSNHWAMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQW 84
Cdd:TIGR01770 104 FYILLLfaLLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   85 DLTQLTHPTSCLILT------------AALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALL-------YLT 145
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  146 SHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLN--FYL--YSLVTAAVFLTLDT 221
Cdd:TIGR01770 264 FSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  222 TKTLK------LSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLR 295
Cdd:TIGR01770 344 LRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423


                  ..
gi 568245794  296 LA 297
Cdd:TIGR01770 424 VV 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 2.22e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.29  E-value: 2.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   3 PLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASALILFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  74 SMTNAWHTGQWD-----LTQLTHPTSC---------LILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLppI 139
Cdd:MTH00198 267 CALYFGFTGNEGmlgtiLSATLETTNIelrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 140 ALLYLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYS---LVTA--- 213
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSAlas 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568245794 214 -AVFLTLDTTKTL------------------KLSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFLPKWFIL 267
Cdd:MTH00198 425 fTVICTLEEFGTRtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-268 1.13e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 77.49  E-value: 1.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   9 FTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQ 88
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  89 LTH----------PTSCLILTAALAMKLGLAPFHFWFPEVL-QGTSLTTGLLLATAMKLPPIALLYL-------TSHSLD 150
Cdd:COG0651  192 LAArlaeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILRVltllfgaDPALFL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 151 STLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLY----SLVTAAVFLT----LDTT 222
Cdd:COG0651  272 GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERAT 351

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 568245794 223 KTLKLSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQ 268
Cdd:COG0651  352 GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 2.56e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 64.69  E-value: 2.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  50 PRAIEAATKYFLVQAAASALILF-SSMTNAWHTGQWDLTQ-----LTHPTSCLILT-----AALAMKLGLAPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAialalITSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 119 LQGT-----------SLTTGLLLAtamklppIALLYLTSHSLDS---TLLTTMAVLSAALGGWVGLNQTQIRKILAFSSI 184
Cdd:PRK02504 237 YEGSptpvvaflsvgSKAAGFALA-------IRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSI 309


                 ....*...
gi 568245794 185 AHLGWMAI 192
Cdd:PRK02504 310 GQAGFVMI 317
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 4.38e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 63.87  E-value: 4.38e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   7 LIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASALIL--FSSMTNAWHtGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLYGLSG-GE 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  84 WDL---------TQLTHPTSCLI----LTAALAMKLGLAPFHFWFPEVLQG-----------TSLTTGLLLATAMklppI 139
Cdd:CHL00049 193 IELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGsptpvvaflsvTSKVAASALATRI----F 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 140 ALLYLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI-IIS------YSPKLTLLNFYLyslvt 212
Cdd:CHL00049 269 DIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVgdsndgYASMITYMLFYI----- 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568245794 213 aavFLTLDTTKTLKLSTLMT----------SWTKTPVLNTALLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 344 ---FMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 1.70e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.94  E-value: 1.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  49 HPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQW--DLTQLTH-----PTSCLILTA---ALAMKLGLAPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 119 LQ-----GTSLTTGLLLAT--------AMKLPPIALLYLtshsldSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIA 185
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMggygllrfALPLFPEASAYF------APLLAALGVIGIIYGALVALAQTDLKRLIAYSSVS 309


                 ....*..
gi 568245794 186 HLGWMAI 192
Cdd:COG1008  310 HMGFVLL 316
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-219 2.87e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 55.15  E-value: 2.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  13 LLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------SALILFSSMTNAWHTGQWDL 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  87 TQLTHPTSCL---ILTAA-------LAMKLGLAPFHFWFPEV-LQGTSLTTGLLLATAMKLPPIALLYLTS-------HS 148
Cdd:PRK08676 191 TELAAHASLLspsVLGASflfifigFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568245794 149 LDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLYSLVTAAVFLTL 219
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 3.07e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 49.56  E-value: 3.07e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568245794  291 FFYLRLAYCTTITLPPHTTNHMKQWRTNKPTGI-SIAILTSLSITLLPLAP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 7.52e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.95  E-value: 7.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALILFS---------SMTNAWHTGQWDLTQLTHPTSCL-ILTAA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 102 LAMKLGLAPFHFWFPEVLQG--TSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTT------MAVLSAALGGWVGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 174 QIRKILAFSSIAHLGWM------AIIISYSPKLT-------------LLNFYLY----SLVTAAVFLTLDTTKTLKLSTL 230
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggiyhIVNHALYkallFLTAGAVIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 568245794 231 MtswTKTPVLNTALLLTLLSLAGLPPLTGFLPKWFI 266
Cdd:PRK08376 390 A---RTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 2.25e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.25  E-value: 2.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   50 PRAIEAATKYFLVQAAASALILFSSMTNAWHTGQW----DLTQLTHPTSC-----LILTAALAMKLGLAPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  120 QGTSLTTGLLLATAMKLPPIALLYLT------SHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAII 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNlplfpdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  194 ISYSPKLTLLN--FYLYS--LVTAAVFLTL----DTTKTLKLSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFLPKWF 265
Cdd:TIGR01972 312 IFSFNELGISGavFQMIShgLITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  ...
gi 568245794  266 ILQ 268
Cdd:TIGR01972 392 ILL 394
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-270 3.56e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.80  E-value: 3.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFS-SMTNAwHTGQWDLTQLTH--PTSCLILTA------ALA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 104 MKLGLAPFHFWFPEVLQGTS-LTTGLLLATAMKLP--PIALLYLT-------SHSLDSTLLTTMAVLSAALGGWVGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 174 QIRKILAFSSIAHLGWMAIIISYSPKLTLLN--FYL--YSLVTAAVFLTL----DTTKTLKLSTLMTSWTKTPVLNTALL 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260
                 ....*....|....*....|....*
gi 568245794 246 LTLLSLAGLPPLTGFLPKWFILQEL 270
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGA 398
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 2.26e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 49.31  E-value: 2.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  55 AATKYFLVQAAASALILFSSMTNAWHTGQWDL---TQLTH----PTSCLILTA---ALAMKLGLAPFHFWFPEVLQGTSL 124
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlplSTQLLLLAPilvGFGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 125 TTGLLLA-TAMKLPPIALL------YLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYS 197
Cdd:PRK06473 238 PVSVLLAgVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 568245794 198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
PRK12650 PRK12650
DUF4040 family protein;
29-263 2.52e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 49.27  E-value: 2.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  29 AWaglEINTLAILPLISKSHhPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQLTHPTSCL---ILTAALAMK 105
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 106 LGLA--------PFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDST-----LLTTMAVLSAALGGWVGLNQ 172
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQK 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 173 TQIRKILAFSSIAHLGWMAIIISYSPKLTL----LNFYLYSLVTAAVFLTLDT----TKTLKLSTLMTSWTKTPVLNTAL 244
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATIGVGTPFALtaavVHTLAHALFKSSLFMLIGVvdhqAGTRDIRRLGSLWRRMPFTFVSV 373

                        250
                 ....*....|....*....
gi 568245794 245 LLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 374 TIAALSMAAVPPLFGFVSK 392
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-227 3.24e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 48.49  E-value: 3.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  55 AATKYFLVQAAASALILFSSMTNAWHTGQ--WDLTQLTH---PTSCLILT-----AALAMKLGLAPFHFWFPEVLQGTSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 125 TTGLLLA-TAMKLPPIALLYLT------SHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIISYS 197
Cdd:PRK12561 218 PVSMILAgVLLKMGGYALIRFNvqmlpdAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAF 297

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 568245794 198 PKL----TLLNFYLYSLVTAAVFL----TLDTTKTLKL 227
Cdd:PRK12561 298 TDLgisgAMLQMISHGLIAAALFFltgvTYERTHTLSI 335
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 3.30e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.84  E-value: 3.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   2 NPLAKLIFTLSLLLGTTITISSNHWAMAWAGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASALILFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  82 GQWD-------LTQLTHPTSCLI----LTAALAMKLGLAPFHFWFPE-----------VLQGTSLTTG-LLLATAMKLPP 138
Cdd:PRK08668 175 GTFDfadisqgLINDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaYGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 139 IALLYLT-----SHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGW----MAIIISYSPKLTLLNFYLYS 209
Cdd:PRK08668 255 GTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYilvgLGLGTSLGFAGGLFHVFNHA 334

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 210 LVTAAVFLTLDT----TKTLKLSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDM 275
Cdd:PRK08668 335 LFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-217 1.51e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.35  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  50 PRAIEAATKYFLVQAAASALILFSSMTNAWH----TGQWDLTQLTH---PTSCLILT-----AALAMKLGLAPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 118 VLQ-----GTSLTTGLLLATA------MKLPpiaLLYLTSHSLdSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAH 186
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrFSLP---LFPDASHEF-APIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 568245794 187 LGW--MAIIISYSPKLTLLNFYLYS--LVTAAVFL 217
Cdd:PRK05846 313 MGFvtLGIFAGNQLGIQGAIFQMIShgLSSAALFL 347
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 7.56e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.15  E-value: 7.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   8 IFTLSLLLgttiTISSNHWAMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFSS----------MTN 77
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  78 AWHTGQW-DLTQLTHPTSCLILTAALAM-------KLGLAPFHFWFP----EVLQGTS-LTTGLLLATA----MKLPPIA 140
Cdd:PRK06458 192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPdahsEAPSPVSaLLSGVLLNVAlyavLRYYILI 271

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 568245794 141 LLYLTSHSLdSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI 192
Cdd:PRK06458 272 DAAIGSDFP-GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 1.07e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.18  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 105 KLGLapfHFWFPEVLQGTSLTTGLLLATAMKLPPIALL-----YLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 180 AFSSIAHLGWMAIIISY--SPKLTLLNFYLYSLVTAAVFL---------TLDTTKTLKLSTLMTSwtkTPVLNTALLLTL 248
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|
gi 568245794 249 LSLAGLPPLTGFLPKWFILQ 268
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLILE 414
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-190 1.39e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.60  E-value: 1.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   7 LIFTLSLLLgttITISSNHWAMaWAGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWD 85
Cdd:COG1009  118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  86 LTQL-----THPTSCLILTAALAM------KLGLAPFHFWFPEVLQGTSLTTGLLLATAM---------KLPPIalLYLT 145
Cdd:COG1009  194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMvkagvyllaRLSPL--FALS 271

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 568245794 146 SHSLdsTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWM 190
Cdd:COG1009  272 PVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 3.57e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 3.57e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALILFS-----SMTNAWHTGqwDLTQLTHP--------TSCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 100 AALAMKLGLAPFHFWFPEVL-QGTSLTTGLLLATAMKLPP---IALLYLTSHS-------LDSTLLTTMAVLSAALGGWV 168
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYsEAPSFISVFFSGTSTKVMIyliIRIVYDVFKAnfvfttlPFNNVFMILAALAIVFGSVL 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 169 GLNQTQIRKILAFSSIAHLGWMAIIISYSPKLTLLNFYLY----SLVTAAVFLTLDTTK----TLKLSTLMTSWTKTPVL 240
Cdd:PRK12662 297 AILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKI 376

                        250       260
                 ....*....|....*....|....*..
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPKWFIL 267
Cdd:PRK12662 377 TLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-267 6.06e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.83  E-value: 6.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 110 PFHFWFPEVLQG-TSLTTGLLLATAMKLPpIALLYLTSHSLDST-----LLTTMAVLSAALGGWVGLNQTQIRKILAFSS 183
Cdd:PRK12647 213 PFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 184 IAHLGWMAIIISYSPKLTLLNFYLY----SLVTAAVFL---TLD----TTKTLKLSTLmtsWTKTPVLNTALLLTLLSLA 252
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMvagIIDhetgTRDITKLGGL---RRAMPITAAAALLAALSMA 368

                        170
                 ....*....|....*
gi 568245794 253 GLPPLTGFLPKWFIL 267
Cdd:PRK12647 369 GLPPLFGFLAKELIY 383
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 6.36e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 6.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  55 AATKYFLVQAAASALILFSSMTNAWHTGQWD-------LTQLTHPTSCLILTAAL---AMKLGLAPFHFWFPEVLQGTSL 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaisTQNLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 125 TTGLLLATAM-KLPPIAL------LYLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGW-------- 189
Cdd:PRK07363 238 AVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYilvaaaag 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 190 --------MAIIISYSPKLTLLnFYLYSLVTAAVfltlDTTKTLKLSTLMTSWTKTPVLNTALLLTLLSLAGLPPLTGFL 261
Cdd:PRK07363 318 tqlsllgaVAQMISHGLILALL-FHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                 ....*..
gi 568245794 262 PKWFILQ 268
Cdd:PRK07363 393 AEFIVFQ 399
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-228 7.48e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 41.23  E-value: 7.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  55 AATKYFLVQAAASALILFSSMTNAWHTG--QWDLTQLTH----PTSCLILTAAL----AMKLGLAPFHFWFPEVL-QGTS 123
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAAkdfgLGFQLLCYAGLliayGVKLPIVPLHTWLPDAHgEATA 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 124 LTTGLLLATAMKLPPIALLYLT------SHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI-IISY 196
Cdd:PRK02546 246 PVHMLLAGILLKMGGYALLRMNagmlpdAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIgIGSF 325

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 568245794 197 SPKLT---LLNFYLYSLVTAAVFL----TLDTTKTLKLS 228
Cdd:PRK02546 326 TDLGTsgaMLQMISHGLIGASLFFlvgaTYDRTHTLMLD 364
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
4-190 8.45e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.22  E-value: 8.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794   4 LAKLIFTLSlllGTTITISSNHWAM---AWA--GLEINTLailpLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNA 78
Cdd:PRK08168 103 VRALAGVLA---AVHLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAY 175

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  79 WHTGQWDLTQL-----THPTS------CLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALL----Y 143
Cdd:PRK08168 176 LEVGSLSLSALwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIrfapL 255

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 568245794 144 LTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWM 190
Cdd:PRK08168 256 LEQAPPARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 8.52e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 41.45  E-value: 8.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  96 LILTAALAmKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALL-YLTSHSLDST----LLTTMAVLSAALGGWVGL 170
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVaRLAPGFADVPvwrpTVLVLGLATMLLGGWRAL 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 171 NQTQIRKILAFSSIAHLGWMAIIISYSPK------LTLLnfYLYSLVTAAVFLTL----DTTKTLKLSTLMTSWTKTPVL 240
Cdd:PRK12644 287 RQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQPVL 364

                        170       180
                 ....*....|....*....|...
gi 568245794 241 NTALLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 365 AVVAALAAASMAGLPPLLGFVAK 387
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-197 1.54e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 40.45  E-value: 1.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  95 CLILTAALAMKLGLAPFHFWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDSTLLTTMAV-----LSAALGGWVG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                         90       100
                 ....*....|....*....|....*...
gi 568245794 170 LNQTQIRKILAFSSIAHLGWMAIIISYS 197
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACGLS 320
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 5.07e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.66  E-value: 5.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794  48 HHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQLTHPTS---------------CLILTAAlAMKLGLAPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 113 FWFPEVLQGTSLTTGLLLATAMKLPPIALLYLTSHSLDST-----LLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568245794 188 GWMAIIISYS-----------PKLTLLNFYLYS----LVTAAVFLTLDTTKTLKLSTLMTswtKTPVLNTALLLTLLSLA 252
Cdd:PRK12649 315 AYLMTMYGYTtyhepglgvaaATFHLLNHATFKaclfLVAGIVAHEAATRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 568245794 253 GLPPLTGFLPK 263
Cdd:PRK12649 392 GIPPLNGFLSK 402
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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