|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-168 |
1.86e-84 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 252.07 E-value: 1.86e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 1 MNPLTFIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 81 SGQWTIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMNTNLLLLMALT 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00105 161 SILIGGWG 168
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-166 |
4.23e-10 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 56.94 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 23 STHWFMTWLGFEMNMMAVIP-VLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQWTIMNMEHFIPST----- 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 97 ------LITIALVMKLGLAPFHFWVPEVTQGVSL-NSGLILLTWQKIAPLALM-----YQIYSSMNTNLLLLMALTSIMV 164
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160
|
..
gi 56787981 165 GG 166
Cdd:pfam00361 161 GS 162
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
6-165 |
2.01e-09 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 55.12 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 6 FIILLVTIFSGTSIVLMSTHWFMTWLGFEMnmmAVIP----VLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYS 81
Cdd:COG1007 104 FYALLLFATLGMMLMASANDLLTLFLGLEL---LSLSlyvlVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGAT 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 82 GQWTIMNMEHFI-----PSTLITIALVM-------KLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSM 149
Cdd:COG1007 181 GSLNLAGIAAALaaggaNSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEA 260
|
170 180
....*....|....*....|...
gi 56787981 150 N-------TNLLLLMALTSIMVG 165
Cdd:COG1007 261 FpglaadwQLLLAVLAVLSMTVG 283
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
6-165 |
1.32e-05 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 44.17 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 6 FIILLVTIFSGTSIVLMSTHWFMTWLGFE-MNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQW 84
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLElQSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 85 TIMNMEHFIPST------------LITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIY------ 146
Cdd:TIGR01770 184 NFEDLLLFLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfg 263
|
170 180
....*....|....*....|
gi 56787981 147 -SSMNTNLLLLMALTSIMVG 165
Cdd:TIGR01770 264 fSEAWQIFLAIIAFLSMLIG 283
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-168 |
1.86e-84 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 252.07 E-value: 1.86e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 1 MNPLTFIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 81 SGQWTIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMNTNLLLLMALT 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00105 161 SILIGGWG 168
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-168 |
3.29e-61 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 192.71 E-value: 3.29e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 1 MNPLTFIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMY 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 81 SGQWTIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIySSMNTNLLLLMALT 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQI-APTNPTLLITLGLT 159
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00135 160 STLVGGWG 167
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-168 |
8.21e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 188.88 E-value: 8.21e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 1 MNPLTFIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMY 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 81 SGQWTIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMNTNLLLLMALT 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00112 161 STLIGGWG 168
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-168 |
1.04e-59 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 188.59 E-value: 1.04e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 1 MNPLTFIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMY 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 81 SGQWTIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMNTNLLLLMALT 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00070 161 STLIGGWG 168
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-168 |
1.69e-48 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 160.10 E-value: 1.69e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 1 MNPLTFIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMY 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 81 SGQWTIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMNTNLLLLMALT 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00041 161 SVLVGGWG 168
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-168 |
1.49e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 149.73 E-value: 1.49e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 1 MNPLTFIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMY 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 81 SGQWTIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMNTNLLLLMALT 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00200 161 SVLVGGWG 168
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
6-168 |
1.32e-25 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 99.58 E-value: 1.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 6 FIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQWT 85
Cdd:MTH00144 6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 86 IMnmehfipsTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMNT-NLLLLMALTSIMV 164
Cdd:MTH00144 86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALV 157
|
....
gi 56787981 165 GGWG 168
Cdd:MTH00144 158 GSIG 161
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-168 |
1.43e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 96.82 E-value: 1.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 1 MNPLTFIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMy 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 81 sgqwtIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIyssMNTNLLLLMALT 160
Cdd:MTH00160 81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00160 153 SAIIGAIG 160
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
12-168 |
1.09e-19 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 83.68 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 12 TIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQWTImnmeh 91
Cdd:MTH00011 14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKN----- 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56787981 92 fIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMNTNLLLLMALTSIMVGGWG 168
Cdd:MTH00011 89 -ITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLG 164
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-168 |
1.65e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 72.40 E-value: 1.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 8 ILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIinSMYSGQWTIM 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLYLSL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 88 nmehfIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSMntNLLLLMALTSIMVGGW 167
Cdd:MTH00197 80 -----LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSF--MGLLICSVLSSLIGGI 152
|
.
gi 56787981 168 G 168
Cdd:MTH00197 153 G 153
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
6-168 |
6.84e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 62.34 E-value: 6.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 6 FIILLVTIFSGTSIVLMSTHWFMTWLGFEM-NMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQW 84
Cdd:MTH00199 99 SPILILIVALGSLLLVSSINWLSIYLAIELqTLTLFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGET 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 85 TIM----NMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIysSMNTNLLLLMALT 160
Cdd:MTH00199 179 SIQginsILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQI--GPVTNVVLICAVL 256
|
....*...
gi 56787981 161 SIMVGGWG 168
Cdd:MTH00199 257 SIIYGAIG 264
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-166 |
4.23e-10 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 56.94 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 23 STHWFMTWLGFEMNMMAVIP-VLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQWTIMNMEHFIPST----- 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 97 ------LITIALVMKLGLAPFHFWVPEVTQGVSL-NSGLILLTWQKIAPLALM-----YQIYSSMNTNLLLLMALTSIMV 164
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160
|
..
gi 56787981 165 GG 166
Cdd:pfam00361 161 GS 162
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
6-165 |
2.01e-09 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 55.12 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 6 FIILLVTIFSGTSIVLMSTHWFMTWLGFEMnmmAVIP----VLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYS 81
Cdd:COG1007 104 FYALLLFATLGMMLMASANDLLTLFLGLEL---LSLSlyvlVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGAT 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 82 GQWTIMNMEHFI-----PSTLITIALVM-------KLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYSSM 149
Cdd:COG1007 181 GSLNLAGIAAALaaggaNSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEA 260
|
170 180
....*....|....*....|...
gi 56787981 150 N-------TNLLLLMALTSIMVG 165
Cdd:COG1007 261 FpglaadwQLLLAVLAVLSMTVG 283
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-168 |
5.85e-09 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 53.88 E-value: 5.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 16 GTSIVLMSTHWFMTWLGFEMNMMAV-IPVLMKKYNPRSMEAATKYFLTQATASMILMLAI-------------IINSMYS 81
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 82 GQWTIMNMEHFIPSTLITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIysSMNTNLLLLMALTS 161
Cdd:MTH00196 85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGGLFS 162
|
....*..
gi 56787981 162 IMVGGWG 168
Cdd:MTH00196 163 LFVGAIG 169
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
6-165 |
1.32e-05 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 44.17 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 6 FIILLVTIFSGTSIVLMSTHWFMTWLGFE-MNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQW 84
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLElQSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 85 TIMNMEHFIPST------------LITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIY------ 146
Cdd:TIGR01770 184 NFEDLLLFLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfg 263
|
170 180
....*....|....*....|
gi 56787981 147 -SSMNTNLLLLMALTSIMVG 165
Cdd:TIGR01770 264 fSEAWQIFLAIIAFLSMLIG 283
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
45-165 |
9.05e-05 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 41.73 E-value: 9.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 45 MKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQWTIMNM-----EHFIPSTLITIALVM-------KLGLAPFH 112
Cdd:PRK05777 145 LRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIakalaDGSGNSLLLLFGLVFllvglafKLSAVPFH 224
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 113 FWVPEVTQGVSLNSGLILLTWQKIAPLALMYQI-------YSSMNTNLLLLMALTSIMVG 165
Cdd:PRK05777 225 MWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggLSEDWQQVLAIIAIASMLVG 284
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
97-168 |
6.40e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 39.07 E-value: 6.40e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56787981 97 LITIALVMKLGLAPFHFWVPEVTQGVSLNSGLILLTWQKIAPLALMYQIYssMNTNLLLLMALTSIMVGGWG 168
Cdd:MTH00198 304 FITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV--ITSKLLLSVAIISLVVGAFG 373
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
6-116 |
8.31e-04 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 38.59 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 6 FIILLVTIFSGTSIVLMSTHWFMTWLGFEMNMMAVIPVLMKKYNPRSMEAATKYFLTQATASMILMLAIIINSMYSGQWT 85
Cdd:COG0651 109 FYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLN 188
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 56787981 86 IMNMEHFIPS----------TLITIALVMKLGLAPFHFWVP 116
Cdd:COG0651 189 MADLAARLAEldpglllaafALLLVGFGIKAALFPLHFWLP 229
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
6-121 |
4.04e-03 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 36.95 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 6 FIILLVTIFSGTSIVLMSTHWFMTWLGFEMnmMAVIPVLMKKY---NPRSMEAATKYFLTQATASMILMLAIIINSMYSG 82
Cdd:PRK02504 112 FAAILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSG 189
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 56787981 83 QWT----IMNMEHFIPSTLITIALVM-------KLGLAPFHFWVPEVTQG 121
Cdd:PRK02504 190 GSTqlsaIALALITSPSLGLALALVFviagiafKISAVPFHQWTPDVYEG 239
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-165 |
6.61e-03 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 36.14 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56787981 51 RSMEAATKYFLTQATASMILML-----------AIIINSMYSGqwtIMNMEH------FIPSTLITIALVMKLGLAPFHF 113
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYgfswlyglsggEIELQEIVNG---LINTQMynspgiSIALIFITVGIGFKLSLAPFHQ 235
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 56787981 114 WVPEVTQGVSLNSGLILLTWQKIAPLALMYQI------YSSMNTNLLL-LMALTSIMVG 165
Cdd:CHL00049 236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipfyFSSNEWHLLLeILAILSMILG 294
|
|
| |
