NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|56692803|ref|YP_164260|]
View 

triple gene block protein 2 [Sweet potato chlorotic fleck virus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Plant_vir_prot super family cl03157
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 4-104 1.75e-21

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


The actual alignment was detected with superfamily member pfam01307:

Pssm-ID: 279627  Cd Length: 100  Bit Score: 81.32  E-value: 1.75e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56692803     4 TPPADYSKSVLAFSVGCGIAVIIFVTTRSTLPYVGDGQHSLPHGGTYCDAAKRVIYGKPSRGafdwlyTSGSASYAIPLI 83
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPRAG------SSSSISSRTLFL 74

                          90       100
                  ....*....|....*....|....*
gi 56692803    84 LC----LTVLIYcLSPKPQLVCHRC 104
Cdd:pfam01307  75 LAvlilLILLIY-ASHYLSRSPHSR 98
 
Name Accession Description Interval E-value
Plant_vir_prot pfam01307
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 4-104 1.75e-21

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


Pssm-ID: 279627  Cd Length: 100  Bit Score: 81.32  E-value: 1.75e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56692803     4 TPPADYSKSVLAFSVGCGIAVIIFVTTRSTLPYVGDGQHSLPHGGTYCDAAKRVIYGKPSRGafdwlyTSGSASYAIPLI 83
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPRAG------SSSSISSRTLFL 74

                          90       100
                  ....*....|....*....|....*
gi 56692803    84 LC----LTVLIYcLSPKPQLVCHRC 104
Cdd:pfam01307  75 LAvlilLILLIY-ASHYLSRSPHSR 98
 
Name Accession Description Interval E-value
Plant_vir_prot pfam01307
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 4-104 1.75e-21

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


Pssm-ID: 279627  Cd Length: 100  Bit Score: 81.32  E-value: 1.75e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56692803     4 TPPADYSKSVLAFSVGCGIAVIIFVTTRSTLPYVGDGQHSLPHGGTYCDAAKRVIYGKPSRGafdwlyTSGSASYAIPLI 83
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPRAG------SSSSISSRTLFL 74

                          90       100
                  ....*....|....*....|....*
gi 56692803    84 LC----LTVLIYcLSPKPQLVCHRC 104
Cdd:pfam01307  75 LAvlilLILLIY-ASHYLSRSPHSR 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH