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Conserved domains on  [gi|56675307|emb|CAC79834|]
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cytochrome b, partial (mitochondrion) [Glaucidium brasilianum]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-300 0e+00

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 574.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-300 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 574.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-296 7.89e-102

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 305.18  E-value: 7.89e-102
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYlyKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  80 ---TWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLH-FLLPF 155
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307 156 II*GLTTIHLTFLHESGSNNPLGI----PSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNmlGDPENFTPANPLV 231
Cdd:COG1290 200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56675307 232 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWAL 296
Cdd:COG1290 278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAF 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-174 1.03e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 246.90  E-value: 1.03e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSY--LYK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  79 ETWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII* 158
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184

                       170
                ....*....|....*.
gi 56675307 159 GLTTIHLTFLHESGSN 174
Cdd:cd00284 185 VIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-172 1.34e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 220.72  E-value: 1.34e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307     1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    79 ETWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII* 158
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175

                         170
                  ....*....|....
gi 56675307   159 GLTTIHLTFLHESG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 211-264 3.09e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.09e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 56675307   211 ALFSPNMLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 264
Cdd:TIGR01156  55 AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-300 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 574.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333
CYTB MTH00100
cytochrome b; Provisional
 1-300 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 529.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITAL 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00100 193 AMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEW 272

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:MTH00100 273 YFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332
CYTB MTH00131
cytochrome b; Provisional
 1-300 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 525.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00131 193 TILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEW 272

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:MTH00131 273 YFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADV 332
CYTB MTH00074
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 510.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00074 194 SIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEW 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTAN 299
Cdd:MTH00074 274 YFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVAN 332
CYTB MTH00156
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 507.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAM 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00156 183 VMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEW 262

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTAN 299
Cdd:MTH00156 263 YFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321
CYTB MTH00191
cytochrome b; Provisional
 1-300 7.83e-180

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 502.14  E-value: 7.83e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAAL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00191 190 SLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEW 269

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:MTH00191 270 YFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANF 329
CYTB MTH00145
cytochrome b; Provisional
 1-299 1.32e-172

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 484.41  E-value: 1.32e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00145 194 SVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEW 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTAN 299
Cdd:MTH00145 274 YFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGN 332
CYTB MTH00034
cytochrome b; Validated
 1-299 3.46e-168

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 473.42  E-value: 3.46e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAL 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00034 193 SIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEW 272

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTAN 299
Cdd:MTH00034 273 YFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIAT 331
CYTB MTH00016
cytochrome b; Validated
 1-300 1.11e-165

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 466.85  E-value: 1.11e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAAL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00016 194 SMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEW 273

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:MTH00016 274 YFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNF 333
CYTB MTH00053
cytochrome b; Provisional
 1-299 2.79e-143

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 410.25  E-value: 2.79e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00053 194 ALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEW 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTAN 299
Cdd:MTH00053 274 YFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGD 332
CYTB MTH00022
cytochrome b; Validated
 1-299 2.46e-142

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 407.93  E-value: 2.46e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFL 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00022 192 VIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEW 271

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTAN 299
Cdd:MTH00022 272 YFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVD 330
CYTB MTH00224
cytochrome b; Provisional
 1-299 2.46e-138

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 397.75  E-value: 2.46e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00224 194 TILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEW 273

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTAN 299
Cdd:MTH00224 274 YFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTS 332
CYTB MTH00033
cytochrome b; Provisional
 1-300 1.21e-108

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 322.27  E-value: 1.21e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFS--PNMLGDPENFTPANPLVTPPHIKP 238
Cdd:MTH00033 190 VLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQP 269

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56675307  239 EWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:MTH00033 270 EWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-296 7.89e-102

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 305.18  E-value: 7.89e-102
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYlyKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  80 ---TWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLH-FLLPF 155
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307 156 II*GLTTIHLTFLHESGSNNPLGI----PSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNmlGDPENFTPANPLV 231
Cdd:COG1290 200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56675307 232 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWAL 296
Cdd:COG1290 278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAF 344
CYTB MTH00086
cytochrome b; Provisional
 1-266 8.68e-101

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 301.09  E-value: 8.68e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   81 WNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GL 160
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  161 TTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDiLGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00086 182 VLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEW 260

                        250       260
                 ....*....|....*....|....*.
gi 56675307  241 YFLFAYAILRSIPNKLGGVLALAASV 266
Cdd:MTH00086 261 YFLFAYAILRAIPNKVLGVIALLMSI 286
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-174 1.03e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 246.90  E-value: 1.03e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSY--LYK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  79 ETWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII* 158
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184

                       170
                ....*....|....*.
gi 56675307 159 GLTTIHLTFLHESGSN 174
Cdd:cd00284 185 VIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 2-260 3.74e-74

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 232.95  E-value: 3.74e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    2 GSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKETW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   82 NTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII*GLT 161
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307  162 TIHLTFLHESGSNNPLGIP---SDCdkIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKP 238
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSSngySDV--VYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKP 262

                        250       260
                 ....*....|....*....|..
gi 56675307  239 EWYFLFAYAILRSIPNKLGGVL 260
Cdd:MTH00046 263 EWYFLAFYAMLRSINSKIGGLV 284
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-172 1.34e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 220.72  E-value: 1.34e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307     1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    79 ETWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLHFLLPFII* 158
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175

                         170
                  ....*....|....
gi 56675307   159 GLTTIHLTFLHESG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 175-300 6.30e-40

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 137.78  E-value: 6.30e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307 175 NPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLALFSPNMLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 254
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 56675307 255 KLGGVLALAASVLILLLIPLLHKSKQRAlTFRPLSQTLFWALTANL 300
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGT 125
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-221 5.13e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 136.22  E-value: 5.13e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    56 SLFFMCIYLHIGRGLYYGSYLYKE--TWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 133
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   134 GG*SVD*PTLTRFFTLHF-LLPFII*GLTTIHLTFLHESGSNNPLGIPSDCDKIPFHPYFTTKDILGLLLMLPPLTSLAL 212
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 56675307   213 FSPNMLGDP 221
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-177 6.98e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 121.74  E-value: 6.98e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKE- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   80 -TWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLH-FLLPFII 157
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 56675307  158 *GLTTIHLTFLHESGSNNPL 177
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-177 1.10e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.59  E-value: 1.10e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307    1 FGSLLGICLTTQIITGLLLATHYTADSTLAFTSVSHTCRDVQYGWLIRNLHANGASLFFMCIYLHIGRGLYYGSYLYKE- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56675307   80 -TWNTGVLLLLTLMATAVVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGG*SVD*PTLTRFFTLH-FLLPFII 157
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195

                        170       180
                 ....*....|....*....|
gi 56675307  158 *GLTTIHLTFLHESGSNNPL 177
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
226-300 1.16e-27

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 104.10  E-value: 1.16e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56675307   226 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRALTFRPLSQTLFWALTANL 300
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDF 75
petD CHL00058
cytochrome b6/f complex subunit IV
 211-264 7.84e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.02  E-value: 7.84e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 56675307  211 ALFSPNMLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 264
Cdd:CHL00058  55 AVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 211-264 2.03e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.65  E-value: 2.03e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 56675307 211 ALFSPNMLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 264
Cdd:COG5679  56 AVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 211-264 3.09e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.09e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 56675307   211 ALFSPNMLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 264
Cdd:TIGR01156  55 AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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