NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|566572955|gb|AHC69982|]
View 

cytochrome b, partial (mitochondrion) [Gadopsis bispinosus 'BG']

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 780.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   1 NLRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNI 80
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  81 HANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQ 160
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 161 WIWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTL 240
Cdd:MTH00131 163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 241 ALFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQ 320
Cdd:MTH00131 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 566572955 321 LFFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVLKWS 378
Cdd:MTH00131 323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 780.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   1 NLRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNI 80
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  81 HANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQ 160
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 161 WIWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTL 240
Cdd:MTH00131 163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 241 ALFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQ 320
Cdd:MTH00131 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 566572955 321 LFFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVLKWS 378
Cdd:MTH00131 323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-371 9.21e-134

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 387.61  E-value: 9.21e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   9 LKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASMF 88
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  89 FICIYMHIGRGLYYGSylYKE----TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWG 164
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 165 GFSVDNATLTRFFAFHFM-LPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNK----IPFHPYFSYKDLLGFIMLLTSLST 239
Cdd:COG1290  178 GEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 240 LALFMPNllGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLSSILVLMLVPILHTSKRRSLTFRP 317
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 566572955 318 VSQLFFWILIADVAILTWIGGMPveDPYIIIGQIASTLYFMLFLVFMPMIGWLE 371
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-204 2.05e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 283.10  E-value: 2.05e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   7 PLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGAS 86
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  87 MFFICIYMHIGRGLYYGSY--LYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWG 164
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 566572955 165 GFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSN 204
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-202 2.43e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 264.63  E-value: 2.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   16 LVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASMFFICIYMH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   96 IGRGLYYG--SYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSVDNATL 173
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 566572955  174 TRFFAFHFMLPFIIMAFTIIHLLFLHETG 202
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 256-337 4.48e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 4.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  256 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTF-RPVSQLFFwiLIADVAILt 334
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 566572955  335 WIG 337
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 780.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   1 NLRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNI 80
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  81 HANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQ 160
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 161 WIWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTL 240
Cdd:MTH00131 163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 241 ALFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQ 320
Cdd:MTH00131 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 566572955 321 LFFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVLKWS 378
Cdd:MTH00131 323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
CYTB MTH00119
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 726.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   1 NLRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNI 80
Cdd:MTH00119   4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  81 HANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQ 160
Cdd:MTH00119  84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 161 WIWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTL 240
Cdd:MTH00119 164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 241 ALFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQ 320
Cdd:MTH00119 244 ALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQ 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 566572955 321 LFFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVLKW 377
Cdd:MTH00119 324 LLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00074
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 715.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   1 NLRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNI 80
Cdd:MTH00074   4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  81 HANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQ 160
Cdd:MTH00074  84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 161 WIWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTL 240
Cdd:MTH00074 164 WIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 241 ALFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQ 320
Cdd:MTH00074 244 SLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQ 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 566572955 321 LFFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVLKW 377
Cdd:MTH00074 324 ILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00100
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 702.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   1 NLRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNI 80
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  81 HANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQ 160
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 161 WIWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTL 240
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 241 ALFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQ 320
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 566572955 321 LFFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVLKW 377
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00191
cytochrome b; Provisional
 2-366 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 667.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   2 LRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIH 81
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  82 ANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQW 161
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 162 IWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLA 241
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 242 LFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQL 321
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 566572955 322 FFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPM 366
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 2-375 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 640.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   2 LRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIH 81
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  82 ANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQW 161
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 162 IWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLA 241
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 242 LFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQL 321
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 566572955 322 FFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVL 375
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00156
cytochrome b; Provisional
 9-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 639.52  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   9 LKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASMF 88
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  89 FICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSV 168
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 169 DNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLALFMPNLL 248
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 249 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQLFFWILIA 328
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 566572955 329 DVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFM 364
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 2-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 620.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   2 LRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIH 81
Cdd:MTH00145   5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  82 ANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQW 161
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 162 IWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLA 241
Cdd:MTH00145 165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 242 LFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQL 321
Cdd:MTH00145 245 LFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQV 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 566572955 322 FFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVfMPMIGWLENKVL 375
Cdd:MTH00145 325 LFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 2-376 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 584.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   2 LRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIH 81
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  82 ANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQW 161
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 162 IWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLA 241
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 242 LFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQL 321
Cdd:MTH00016 245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQI 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 566572955 322 FFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLvFMPMIGWLENKVLK 376
Cdd:MTH00016 325 LFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 2-376 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 536.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   2 LRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIH 81
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  82 ANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQW 161
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 162 IWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLA 241
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 242 LFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQL 321
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 566572955 322 FFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVLK 376
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 2-376 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 531.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   2 LRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIH 81
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  82 ANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQW 161
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 162 IWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLA 241
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 242 LFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQL 321
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 566572955 322 FFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFMPMIGWLENKVLK 376
Cdd:MTH00053 325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 2-376 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 521.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   2 LRKTHPLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIH 81
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  82 ANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQW 161
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 162 IWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLA 241
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 242 LFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQL 321
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 566572955 322 FFWILIADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVfMPMIGWLENKVLK 376
Cdd:MTH00224 325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII-SPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 2-372 1.15e-146

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 420.11  E-value: 1.15e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   2 LRKTHpLLKIMNDaLVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIH 81
Cdd:MTH00033   3 LRKTG-LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  82 ANGASMFFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQW 161
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 162 IWGGFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLA 241
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 242 L--FMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVS 319
Cdd:MTH00033 241 IepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 566572955 320 QLFFWILIADVAILTWIGGMPV-EDPYIIIGQIASTLYFMLFLVFMPMIGWLEN 372
Cdd:MTH00033 321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-371 9.21e-134

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 387.61  E-value: 9.21e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   9 LKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASMF 88
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  89 FICIYMHIGRGLYYGSylYKE----TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWG 164
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 165 GFSVDNATLTRFFAFHFM-LPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNK----IPFHPYFSYKDLLGFIMLLTSLST 239
Cdd:COG1290  178 GEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 240 LALFMPNllGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLSSILVLMLVPILHTSKRRSLTFRP 317
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 566572955 318 VSQLFFWILIADVAILTWIGGMPveDPYIIIGQIASTLYFMLFLVFMPMIGWLE 371
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 10-364 2.95e-124

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 362.33  E-value: 2.95e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  10 KIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASMFF 89
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  90 ICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSVD 169
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 170 NATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLALFmPNLLG 249
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIFSLFY-PFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 250 DPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSkrrSLTFRPVSQLFFWILIAD 329
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 566572955 330 VAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVFM 364
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-204 2.05e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 283.10  E-value: 2.05e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   7 PLLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGAS 86
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  87 MFFICIYMHIGRGLYYGSY--LYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWG 164
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 566572955 165 GFSVDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSN 204
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 8-363 8.37e-95

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 287.26  E-value: 8.37e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   8 LLKIMNDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASM 87
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  88 FFICIYMHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFS 167
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 168 VDNATLTRFFAFHFMLPFIIMAFTIIHLLFLHETGSNNPLGL-NSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLALFMPN 246
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 247 LLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLSSILVLMLVPilhtSKRRSLTFRPVSQLFFWIL 326
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 566572955 327 IADVAILTWIGGMPVEDPYIIIGQIASTLYFMLFLVF 363
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-202 2.43e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 264.63  E-value: 2.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   16 LVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASMFFICIYMH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   96 IGRGLYYG--SYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSVDNATL 173
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 566572955  174 TRFFAFHFMLPFIIMAFTIIHLLFLHETG 202
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 205-352 2.00e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 165.90  E-value: 2.00e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 205 NPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLALFMPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 284
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 566572955 285 KLGGVLALLSSILVLMLVPILHTSKRRSlTFRPVSQLFFWILIADVAILTWIGGMPVEDPYIIIGQIA 352
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-251 3.58e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 160.87  E-value: 3.58e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955   86 SMFFICIYMHIGRGLYYGSYLYKE--TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIW 163
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  164 GGFSVDNATLTRFFAFHFM-LPFIIMAFTIIHLLFLHETGSNNPLGLNSNTNKIPFHPYFSYKDLLGFIMLLTSLSTLAL 242
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 566572955  243 FMPNLLGDP 251
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
256-356 4.18e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.41  E-value: 4.18e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  256 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTFRPVSQLFFWILIADVAILTW 335
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 566572955  336 IGGMPVEDPYIIIGQIASTLY 356
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 31-207 2.01e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 142.54  E-value: 2.01e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  31 FGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASMFFICIYMHIGRGLYYGSYLYKE- 109
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 110 -TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSVDNATLTRFFAFH-FMLPFII 187
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 566572955 188 MAFTIIHLLFLHETGSNNPL 207
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 22-207 6.25e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 127.91  E-value: 6.25e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  22 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADITTAFSSVAHICRDVNYGWFVRNIHANGASMFFICIYMHIGRGLY 101
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 102 YGSYLYKE--TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSVDNATLTRFFAF 179
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 566572955 180 H-FMLPFIIMAFTIIHLLFLHETGSNNPL 207
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 256-343 2.28e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.73  E-value: 2.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 256 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTF-RPVSQLFFWIliaDVAILT 334
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVFLF---GTLVTL 142

                         90
                 ....*....|..
gi 566572955 335 WIG---GMPVED 343
Cdd:COG5679  143 WLGigaALPIDK 154
petD CHL00058
cytochrome b6/f complex subunit IV
 256-342 3.48e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.17  E-value: 3.48e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955 256 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTF-RPVSQLFFWILIAdVAILT 334
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVFLIGTA-VALWL 143


                 ....*....
gi 566572955 335 WIGG-MPVE 342
Cdd:CHL00058 144 GIGAtLPID 152
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 256-337 4.48e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 4.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566572955  256 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILVLMLVPILHTSKRRSLTF-RPVSQLFFwiLIADVAILt 334
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 566572955  335 WIG 337
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH