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Conserved domains on  [gi|56548692|ref|YP_161247|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Notoryctes typhlops]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 556.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    1 MFIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   81 LALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  161 TLKNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTM 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548692  241 LFLGPSFNQDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPPQI 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 556.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    1 MFIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   81 LALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  161 TLKNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTM 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548692  241 LFLGPSFNQDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPPQI 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
16-303 1.95e-119

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 345.61  E-value: 1.95e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSL 95
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    96 V--DLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQENMW 173
Cdd:pfam00146  92 VlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   174 LIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGpSFNQDFTH 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG-GWLGPFPL 250
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 56548692   254 VNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLW 303
Cdd:pfam00146 251 PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
16-299 3.41e-108

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 317.84  E-value: 3.41e-108
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPM--PY 93
Cdd:COG1005  25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  94 SLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQE-NM 172
Cdd:COG1005 105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgGL 184
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692 173 WLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLG----PSFN 248
Cdd:COG1005 185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGgwlgPFPI 264
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|..
gi 56548692 249 QDFTHV-NTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLA 299
Cdd:COG1005 265 LPLGGLpGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 556.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    1 MFIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   81 LALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  161 TLKNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTM 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548692  241 LFLGPSFNQDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPPQI 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
3-317 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 529.85  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    3 IMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLA 82
Cdd:MTH00111   8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   83 LTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTL 162
Cdd:MTH00111  88 LTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTL 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  163 KNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLF 242
Cdd:MTH00111 168 QTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILF 247
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56548692  243 LGPSFNQDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPPQ 317
Cdd:MTH00111 248 LNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-318 2.41e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 500.67  E-value: 2.41e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    1 MFIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALT 80
Cdd:MTH00134   7 THIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALT 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   81 LALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSF 160
Cdd:MTH00134  87 LALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGF 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  161 TLKNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTM 240
Cdd:MTH00134 167 TLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548692  241 LFLGPSFNQDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPPQI 318
Cdd:MTH00134 247 LFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
1-317 7.17e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 499.53  E-value: 7.17e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    1 MFIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALT 80
Cdd:MTH00071   6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   81 LALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSF 160
Cdd:MTH00071  86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  161 TLKNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTM 240
Cdd:MTH00071 166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548692  241 LFLGPSFNQDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPPQ 317
Cdd:MTH00071 246 LFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
3-316 2.47e-148

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 419.32  E-value: 2.47e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    3 IMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLA 82
Cdd:MTH00218   5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   83 LTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTL 162
Cdd:MTH00218  85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  163 KNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLF 242
Cdd:MTH00218 165 EGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56548692  243 LGpsfnqdfTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPP 316
Cdd:MTH00218 245 LG-------TSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
1-316 7.67e-146

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 413.22  E-value: 7.67e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    1 MFIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALT 80
Cdd:MTH00040   5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   81 LALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSF 160
Cdd:MTH00040  85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  161 TLKNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTM 240
Cdd:MTH00040 165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548692  241 LFLG-PSFNQDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPP 316
Cdd:MTH00040 245 LFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
1-309 1.59e-119

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 345.99  E-value: 1.59e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    1 MFIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALT 80
Cdd:MTH00193   3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   81 LALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSF 160
Cdd:MTH00193  83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  161 TLKNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTM 240
Cdd:MTH00193 163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 56548692  241 LFLGPSFnqdfthvNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPM 309
Cdd:MTH00193 243 MFLGGDL-------LSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
NADHdh pfam00146
NADH dehydrogenase;
16-303 1.95e-119

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 345.61  E-value: 1.95e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSL 95
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    96 V--DLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQENMW 173
Cdd:pfam00146  92 VlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   174 LIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGpSFNQDFTH 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG-GWLGPFPL 250
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 56548692   254 VNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLW 303
Cdd:pfam00146 251 PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
16-311 2.54e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 340.57  E-value: 2.54e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSL 95
Cdd:MTH00195  18 AVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGF 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   96 VDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQENMWLI 175
Cdd:MTH00195  98 SSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWVI 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  176 VPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGPSfnqdfthvN 255
Cdd:MTH00195 178 LLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGG--------G 249
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 56548692  256 TFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMAL 311
Cdd:MTH00195 250 TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFAL 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
16-307 3.20e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 339.92  E-value: 3.20e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSL 95
Cdd:MTH00143  17 AVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSS 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   96 VDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQENMWLI 175
Cdd:MTH00143  97 SYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLG 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  176 VPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGPSFNqdFTHVN 255
Cdd:MTH00143 177 FLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSV--LFLLG 254
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 56548692  256 TFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISI 307
Cdd:MTH00143 255 GVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
16-316 2.57e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 328.23  E-value: 2.57e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSL 95
Cdd:MTH00054  18 SIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYGEGV 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   96 V--DLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQENMW 173
Cdd:MTH00054  98 VlsDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNIW 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  174 LIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGPSFN---QD 250
Cdd:MTH00054 178 FIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVisgPT 257
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548692  251 FTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPP 316
Cdd:MTH00054 258 SYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
16-316 3.84e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 327.85  E-value: 3.84e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSL 95
Cdd:MTH00216  22 AVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYERGV 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   96 V--DLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQEN-M 172
Cdd:MTH00216 102 LisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQNNgI 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  173 WLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGPSFNQ-DF 251
Cdd:MTH00216 182 WFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGGWLSPiKY 261
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56548692  252 THVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPP 316
Cdd:MTH00216 262 FKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
1-309 8.31e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 326.22  E-value: 8.31e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    1 MFIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALT 80
Cdd:MTH00225   2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   81 LALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSF 160
Cdd:MTH00225  82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  161 TLKNLIITQENMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTM 240
Cdd:MTH00225 162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 56548692  241 LFLGPSFNqdfthVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPM 309
Cdd:MTH00225 242 LFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
16-299 3.41e-108

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 317.84  E-value: 3.41e-108
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPM--PY 93
Cdd:COG1005  25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  94 SLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQE-NM 172
Cdd:COG1005 105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgGL 184
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692 173 WLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLG----PSFN 248
Cdd:COG1005 185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGgwlgPFPI 264
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|..
gi 56548692 249 QDFTHV-NTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLA 299
Cdd:COG1005 265 LPLGGLpGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
17-303 1.05e-101

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 301.34  E-value: 1.05e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   17 VAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPM--PYS 94
Cdd:PRK06076  27 VAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFgpELV 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   95 LVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQENMWL 174
Cdd:PRK06076 107 IADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLSWN 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  175 IVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLG---PSFNQDF 251
Cdd:PRK06076 187 IIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGgwlPPFPLGG 266
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 56548692  252 THVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLW 303
Cdd:PRK06076 267 GIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
16-316 1.65e-95

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 286.14  E-value: 1.65e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYS- 94
Cdd:MTH00029  23 SVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDQGv 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   95 -LVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQENMW 173
Cdd:MTH00029 103 fLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSVW 182
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  174 LIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLG--------- 244
Cdd:MTH00029 183 LIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGgwlspldgi 262
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 56548692  245 -------PSFNQDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMALACVPP 316
Cdd:MTH00029 263 ptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
2-311 3.88e-92

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 276.66  E-value: 3.88e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692    2 FIMNLLLYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTL 81
Cdd:MTH00010   5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   82 ALTIWTPLPMPYSLVDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFT 161
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  162 LKNLIITQeNMWLIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTML 241
Cdd:MTH00010 165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  242 FLGPSfnqDFTHVNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPMAL 311
Cdd:MTH00010 244 FTSFI---PSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
16-309 1.28e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 210.14  E-value: 1.28e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   16 AVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSL 95
Cdd:MTH00090  12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDF 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   96 VDLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNliitQENMWLI 175
Cdd:MTH00090  92 LSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS----SFSLSLF 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  176 VpawpLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGpsfnqdfthvn 255
Cdd:MTH00090 168 V----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK----------- 232
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 56548692  256 tFTFMTKMMILTLtFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFISIPM 309
Cdd:MTH00090 233 -FSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
17-298 3.26e-53

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 176.27  E-value: 3.26e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   17 VAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSLV 96
Cdd:MTH00058  18 VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGS 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   97 DLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQENMWLIV 176
Cdd:MTH00058  98 YSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLF 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  177 PawPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGPSFnqdfthvnt 256
Cdd:MTH00058 178 P--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGF--------- 246
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 56548692  257 ftFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTL 298
Cdd:MTH00058 247 --VSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
23-298 6.28e-49

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 167.05  E-value: 6.28e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692   23 IERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSLV--DLNL 100
Cdd:CHL00032  50 LEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVlaDLSI 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  101 GLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQE-------NMW 173
Cdd:CHL00032 130 GVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSkygfwgwNLW 209
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  174 -----LIVpawplammWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLG---- 244
Cdd:CHL00032 210 rqpigFIV--------FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGgwnl 281
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548692  245 -------PSFNQDFTHVNTF-TFMTKMMILTLTFLWV------RASYPRFRYDQLMQLLWKNFLPMTL 298
Cdd:CHL00032 282 sipyifiPELFEINKTGGVFgTTIGIFITLAKTYLFLfisittRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
19-305 1.15e-34

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 127.99  E-value: 1.15e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  19 FLTLIERKVLGYMQFRKGPnvvgpyGLLQPFADAVKLFTKEPLHPLSSSVLmYTLAPTLAL--TLALTIWTPLPMPYSLV 96
Cdd:COG0650  20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVALaaMLLAALLVPVLTTGPPL 92
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692  97 DLNLGLLFILALSSLSVYSILWSGWASNSKYALAGALRAVAQTISYEVTLAIILLSIMMINGSFTLKNLIITQEN---MW 173
Cdd:COG0650  93 SFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAAhgpLL 172
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548692 174 LIVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYTAGPFAMFFLAEYANIIIMNALTTMLFLGPSFNQDFTh 253
Cdd:COG0650 173 LSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLPWGIALTLL- 251
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|..
gi 56548692 254 VNTFTFMTKMMILTLTFLWVRASYPRFRYDQLMQLLWKNFLPMTLALCLWFI 305
Cdd:COG0650 252 LALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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