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Conserved domains on  [gi|565345574|ref|XP_006339871|]
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PREDICTED: filament-like plant protein 7 [Solanum tuberosum]

Protein Classification

FPP domain-containing protein( domain architecture ID 12067320)

FPP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FPP pfam05911
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ...
 63-935 0e+00

Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.


:

Pssm-ID: 461778 [Multi-domain]  Cd Length: 859  Bit Score: 966.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    63 KDDFAQKQMKIAQEAIAGWEKTETEARLLKQELEKALQQSIAGEERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNAS 142
Cdd:pfam05911    1 KDDLVKQHAKVAEEAVSGWEKAEAEALALKQQLESVTLQKLTAEERAAHLDGALKECMQQLRNVKEEQEQKIHDVVLKKT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   143 KEFEKTRFLLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGHLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVL 222
Cdd:pfam05911   81 KEWEKIKAELEAKLVETEQELLRAAAENDALSRSLQERENLLMKLSEEKSQAEAEIEALKSRLESCEKEINSLKYELHVL 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   223 EKELEIRNEEREFNRRTADVAHKQHLESVKKIAQLDSECQRLRILVRKRLPGPAALAKMKTEVEMLGKDHAKMRIRKS-- 300
Cdd:pfam05911  161 SKELEIRNEEKNMSRRSADAAHKQHLESVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVEMLGRDSGETRLRRSpv 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   301 -NPSPNGSVD-LTSETAPDTPNRNINFLSEQLCMLEEENRTLKEALNKRANELILSRMTNAQTTAELE------------ 366
Cdd:pfam05911  241 kNSSPHLSPDpDFSEDSLQTPHKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNMCAKTASKLSqleaqleelnqg 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   367 --------KYLPSAQELSVTSLSDMGSDDIGGCSESWASALMSELEHFKNEKQIGPPSSISVGASDINLMDDFAEMEKLA 438
Cdd:pfam05911  321 qvsmelasSQNPASNPPSLTSMSEDGSDDEVSCAESWASALISELEHFKKEKPKTKSSCKSVGNSDLELMDDFLEMEKLA 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   439 VESTVNPLGAVHHALPRENgNEDALESQLCSHSSEAESTERVPVTdryvssndnqSKAILTDKASGEVDNILKMLLEHgH 518
Cdd:pfam05911  401 CLSNDKPSNGSHSSSKSSN-NKKGEESDSEKDSSESTGKELVPVS----------SKDISLGKSLSWLQSRISVILES-H 468

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   519 VTERNPYEILEDIRTAL---------AQKFPSSKNPAEANESvidTDVTCSPNNGDCKEIHTGAGDNVSSERKGEPDMLS 589
Cdd:pfam05911  469 VTQKSIGKILEDIRCALqdindslpeADSCLSSGHPSTDASC---DYITCKENSSVVEKEGSVSGDDKSSEETSKQSIQQ 545

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   590 FMGISINKVIDIIEGINIPSTDDSIPEIlshngngllpfesasketaymvrvfqwKSSELSAVLQEFVQTCRDLLNGKVR 669
Cdd:pfam05911  546 DLSKAISKIIDFVEGLSKEALDDQDTSS---------------------------DSSELSEVLQQFSATCNDVLSGKAD 598

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   670 IEKFTEKLTRTLEWIVNHCFSLQDVSSMKDTIKSHFDWGMET-------GVINPIFEFDKLQTERGNPLYSPVSTSLARM 742
Cdd:pfam05911  599 LEDFVLELSHILDWISNHCFSLLDVSSMEDEIKKHDCIDKVTlsenkvaQVDNGCSEIDNLSSDPEIPSDGPLVSGSNDL 678

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   743 SylpekevlpsvDNESQLPKDEFPEEGATKVDLEGKLEAETLRSDSLMVQLQESEKTIKGLEKEVENLRQSKGMIEDQIE 822
Cdd:pfam05911  679 K-----------TEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKESNSLAETQLK 747

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   823 KEKMVKEDLEMQFEAAKLELNEACRKACCLEKELEDQNKSYKKLDSACHMLQLQKESTEKMELSeNAEVDPEEKLLQSDW 902
Cdd:pfam05911  748 CMAESYEDLETRLTELEAELNELRQKFEALEVELEEEKNCHEELEAKCLELQEQLERNEKKESS-NCDADQEDKKLQQEK 826

                          890       900       910
                   ....*....|....*....|....*....|...
gi 565345574   903 EITAASEKLAECQETILNLGKQLKALASPGDAA 935
Cdd:pfam05911  827 EITAASEKLAECQETILNLGKQLKALASPQDAS 859
 
Name Accession Description Interval E-value
FPP pfam05911
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ...
 63-935 0e+00

Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.


Pssm-ID: 461778 [Multi-domain]  Cd Length: 859  Bit Score: 966.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    63 KDDFAQKQMKIAQEAIAGWEKTETEARLLKQELEKALQQSIAGEERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNAS 142
Cdd:pfam05911    1 KDDLVKQHAKVAEEAVSGWEKAEAEALALKQQLESVTLQKLTAEERAAHLDGALKECMQQLRNVKEEQEQKIHDVVLKKT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   143 KEFEKTRFLLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGHLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVL 222
Cdd:pfam05911   81 KEWEKIKAELEAKLVETEQELLRAAAENDALSRSLQERENLLMKLSEEKSQAEAEIEALKSRLESCEKEINSLKYELHVL 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   223 EKELEIRNEEREFNRRTADVAHKQHLESVKKIAQLDSECQRLRILVRKRLPGPAALAKMKTEVEMLGKDHAKMRIRKS-- 300
Cdd:pfam05911  161 SKELEIRNEEKNMSRRSADAAHKQHLESVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVEMLGRDSGETRLRRSpv 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   301 -NPSPNGSVD-LTSETAPDTPNRNINFLSEQLCMLEEENRTLKEALNKRANELILSRMTNAQTTAELE------------ 366
Cdd:pfam05911  241 kNSSPHLSPDpDFSEDSLQTPHKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNMCAKTASKLSqleaqleelnqg 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   367 --------KYLPSAQELSVTSLSDMGSDDIGGCSESWASALMSELEHFKNEKQIGPPSSISVGASDINLMDDFAEMEKLA 438
Cdd:pfam05911  321 qvsmelasSQNPASNPPSLTSMSEDGSDDEVSCAESWASALISELEHFKKEKPKTKSSCKSVGNSDLELMDDFLEMEKLA 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   439 VESTVNPLGAVHHALPRENgNEDALESQLCSHSSEAESTERVPVTdryvssndnqSKAILTDKASGEVDNILKMLLEHgH 518
Cdd:pfam05911  401 CLSNDKPSNGSHSSSKSSN-NKKGEESDSEKDSSESTGKELVPVS----------SKDISLGKSLSWLQSRISVILES-H 468

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   519 VTERNPYEILEDIRTAL---------AQKFPSSKNPAEANESvidTDVTCSPNNGDCKEIHTGAGDNVSSERKGEPDMLS 589
Cdd:pfam05911  469 VTQKSIGKILEDIRCALqdindslpeADSCLSSGHPSTDASC---DYITCKENSSVVEKEGSVSGDDKSSEETSKQSIQQ 545

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   590 FMGISINKVIDIIEGINIPSTDDSIPEIlshngngllpfesasketaymvrvfqwKSSELSAVLQEFVQTCRDLLNGKVR 669
Cdd:pfam05911  546 DLSKAISKIIDFVEGLSKEALDDQDTSS---------------------------DSSELSEVLQQFSATCNDVLSGKAD 598

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   670 IEKFTEKLTRTLEWIVNHCFSLQDVSSMKDTIKSHFDWGMET-------GVINPIFEFDKLQTERGNPLYSPVSTSLARM 742
Cdd:pfam05911  599 LEDFVLELSHILDWISNHCFSLLDVSSMEDEIKKHDCIDKVTlsenkvaQVDNGCSEIDNLSSDPEIPSDGPLVSGSNDL 678

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   743 SylpekevlpsvDNESQLPKDEFPEEGATKVDLEGKLEAETLRSDSLMVQLQESEKTIKGLEKEVENLRQSKGMIEDQIE 822
Cdd:pfam05911  679 K-----------TEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKESNSLAETQLK 747

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   823 KEKMVKEDLEMQFEAAKLELNEACRKACCLEKELEDQNKSYKKLDSACHMLQLQKESTEKMELSeNAEVDPEEKLLQSDW 902
Cdd:pfam05911  748 CMAESYEDLETRLTELEAELNELRQKFEALEVELEEEKNCHEELEAKCLELQEQLERNEKKESS-NCDADQEDKKLQQEK 826

                          890       900       910
                   ....*....|....*....|....*....|...
gi 565345574   903 EITAASEKLAECQETILNLGKQLKALASPGDAA 935
Cdd:pfam05911  827 EITAASEKLAECQETILNLGKQLKALASPQDAS 859
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 9-234 1.88e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.25  E-value: 1.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    9 KKKSTEKNMVTEDKANLSLRRNDEETLSSDKADLERELKVVTDKLSSALVECRAKDDFAQKQMKIAQEAIAGWEKTETEA 88
Cdd:COG1196   267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   89 RLLKQELEKALQQSIAGEERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNASKEFEktrflLEKKLADAGQKLSRLGS 168
Cdd:COG1196   347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE-----LEEAEEALLERLERLEE 421

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565345574  169 ENTQLSMALMAKEKATGHLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKELEIRNEERE 234
Cdd:COG1196   422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
PRK11281 PRK11281
mechanosensitive channel MscK;
76-272 2.02e-06

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 52.22  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   76 EAIAGWEKTETEARLLKQELEKALQ--QSIAG-EERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNASKEFEKTRFL- 151
Cdd:PRK11281   46 DALNKQKLLEAEDKLVQQDLEQTLAllDKIDRqKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRq 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  152 LEKKLADAGQKLSR----LGSENTQLSMALMAKEKAtghlKGEIDRAEADFSALMTRLESVEKDNASLRYEVRV-LEKEL 226
Cdd:PRK11281  126 LESRLAQTLDQLQNaqndLAEYNSQLVSLQTQPERA----QAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVlLQAEQ 201

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 565345574  227 EIRNEEREFNRRTA-------DVAHKQHLESVKKIAQLDSECQRLRILV-RKRL 272
Cdd:PRK11281  202 ALLNAQNDLQRKSLegntqlqDLLQKQRDYLTARIQRLEHQLQLLQEAInSKRL 255
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 30-346 3.37e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.22  E-value: 3.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    30 NDEETLSSDKADLERELKVVTDKLSSA---LVECRAKDDFAQKQMKIAQEAIagwEKTETEARLLKQELEKALQQSIAGE 106
Cdd:TIGR02169  688 RELSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERL---EELEEDLSSLEQEIENVKSELKELE 764

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   107 ERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNASKEFEKTRFLLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGH 186
Cdd:TIGR02169  765 ARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   187 LKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKEL------------EIRNEEREFNRRTADVAHKQHLESV--K 252
Cdd:TIGR02169  845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdlkkerdeleaQLRELERKIEELEAQIEKKRKRLSElkA 924

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   253 KIAQLDSECQRLRILVRKRLPGPAALAKMKTEVEMLGKDHAkmRIRKSNPSPNGSVDLTSETApdtpnRNINFLSEQLCM 332
Cdd:TIGR02169  925 KLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEE--EIRALEPVNMLAIQEYEEVL-----KRLDELKEKRAK 997

                          330
                   ....*....|....
gi 565345574   333 LEEENRTLKEALNK 346
Cdd:TIGR02169  998 LEEERKAILERIEE 1011
 
Name Accession Description Interval E-value
FPP pfam05911
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ...
 63-935 0e+00

Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.


Pssm-ID: 461778 [Multi-domain]  Cd Length: 859  Bit Score: 966.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    63 KDDFAQKQMKIAQEAIAGWEKTETEARLLKQELEKALQQSIAGEERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNAS 142
Cdd:pfam05911    1 KDDLVKQHAKVAEEAVSGWEKAEAEALALKQQLESVTLQKLTAEERAAHLDGALKECMQQLRNVKEEQEQKIHDVVLKKT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   143 KEFEKTRFLLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGHLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVL 222
Cdd:pfam05911   81 KEWEKIKAELEAKLVETEQELLRAAAENDALSRSLQERENLLMKLSEEKSQAEAEIEALKSRLESCEKEINSLKYELHVL 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   223 EKELEIRNEEREFNRRTADVAHKQHLESVKKIAQLDSECQRLRILVRKRLPGPAALAKMKTEVEMLGKDHAKMRIRKS-- 300
Cdd:pfam05911  161 SKELEIRNEEKNMSRRSADAAHKQHLESVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVEMLGRDSGETRLRRSpv 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   301 -NPSPNGSVD-LTSETAPDTPNRNINFLSEQLCMLEEENRTLKEALNKRANELILSRMTNAQTTAELE------------ 366
Cdd:pfam05911  241 kNSSPHLSPDpDFSEDSLQTPHKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNMCAKTASKLSqleaqleelnqg 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   367 --------KYLPSAQELSVTSLSDMGSDDIGGCSESWASALMSELEHFKNEKQIGPPSSISVGASDINLMDDFAEMEKLA 438
Cdd:pfam05911  321 qvsmelasSQNPASNPPSLTSMSEDGSDDEVSCAESWASALISELEHFKKEKPKTKSSCKSVGNSDLELMDDFLEMEKLA 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   439 VESTVNPLGAVHHALPRENgNEDALESQLCSHSSEAESTERVPVTdryvssndnqSKAILTDKASGEVDNILKMLLEHgH 518
Cdd:pfam05911  401 CLSNDKPSNGSHSSSKSSN-NKKGEESDSEKDSSESTGKELVPVS----------SKDISLGKSLSWLQSRISVILES-H 468

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   519 VTERNPYEILEDIRTAL---------AQKFPSSKNPAEANESvidTDVTCSPNNGDCKEIHTGAGDNVSSERKGEPDMLS 589
Cdd:pfam05911  469 VTQKSIGKILEDIRCALqdindslpeADSCLSSGHPSTDASC---DYITCKENSSVVEKEGSVSGDDKSSEETSKQSIQQ 545

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   590 FMGISINKVIDIIEGINIPSTDDSIPEIlshngngllpfesasketaymvrvfqwKSSELSAVLQEFVQTCRDLLNGKVR 669
Cdd:pfam05911  546 DLSKAISKIIDFVEGLSKEALDDQDTSS---------------------------DSSELSEVLQQFSATCNDVLSGKAD 598

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   670 IEKFTEKLTRTLEWIVNHCFSLQDVSSMKDTIKSHFDWGMET-------GVINPIFEFDKLQTERGNPLYSPVSTSLARM 742
Cdd:pfam05911  599 LEDFVLELSHILDWISNHCFSLLDVSSMEDEIKKHDCIDKVTlsenkvaQVDNGCSEIDNLSSDPEIPSDGPLVSGSNDL 678

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   743 SylpekevlpsvDNESQLPKDEFPEEGATKVDLEGKLEAETLRSDSLMVQLQESEKTIKGLEKEVENLRQSKGMIEDQIE 822
Cdd:pfam05911  679 K-----------TEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKESNSLAETQLK 747

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   823 KEKMVKEDLEMQFEAAKLELNEACRKACCLEKELEDQNKSYKKLDSACHMLQLQKESTEKMELSeNAEVDPEEKLLQSDW 902
Cdd:pfam05911  748 CMAESYEDLETRLTELEAELNELRQKFEALEVELEEEKNCHEELEAKCLELQEQLERNEKKESS-NCDADQEDKKLQQEK 826

                          890       900       910
                   ....*....|....*....|....*....|...
gi 565345574   903 EITAASEKLAECQETILNLGKQLKALASPGDAA 935
Cdd:pfam05911  827 EITAASEKLAECQETILNLGKQLKALASPQDAS 859
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 9-234 1.88e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.25  E-value: 1.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    9 KKKSTEKNMVTEDKANLSLRRNDEETLSSDKADLERELKVVTDKLSSALVECRAKDDFAQKQMKIAQEAIAGWEKTETEA 88
Cdd:COG1196   267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   89 RLLKQELEKALQQSIAGEERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNASKEFEktrflLEKKLADAGQKLSRLGS 168
Cdd:COG1196   347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE-----LEEAEEALLERLERLEE 421

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565345574  169 ENTQLSMALMAKEKATGHLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKELEIRNEERE 234
Cdd:COG1196   422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
PRK11281 PRK11281
mechanosensitive channel MscK;
76-272 2.02e-06

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 52.22  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   76 EAIAGWEKTETEARLLKQELEKALQ--QSIAG-EERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNASKEFEKTRFL- 151
Cdd:PRK11281   46 DALNKQKLLEAEDKLVQQDLEQTLAllDKIDRqKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRq 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  152 LEKKLADAGQKLSR----LGSENTQLSMALMAKEKAtghlKGEIDRAEADFSALMTRLESVEKDNASLRYEVRV-LEKEL 226
Cdd:PRK11281  126 LESRLAQTLDQLQNaqndLAEYNSQLVSLQTQPERA----QAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVlLQAEQ 201

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 565345574  227 EIRNEEREFNRRTA-------DVAHKQHLESVKKIAQLDSECQRLRILV-RKRL 272
Cdd:PRK11281  202 ALLNAQNDLQRKSLegntqlqDLLQKQRDYLTARIQRLEHQLQLLQEAInSKRL 255
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 30-346 3.37e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.22  E-value: 3.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    30 NDEETLSSDKADLERELKVVTDKLSSA---LVECRAKDDFAQKQMKIAQEAIagwEKTETEARLLKQELEKALQQSIAGE 106
Cdd:TIGR02169  688 RELSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERL---EELEEDLSSLEQEIENVKSELKELE 764

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   107 ERLVNLDAALKECMQQLRFIRDEQENRIHDAVSNASKEFEKTRFLLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGH 186
Cdd:TIGR02169  765 ARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   187 LKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKEL------------EIRNEEREFNRRTADVAHKQHLESV--K 252
Cdd:TIGR02169  845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdlkkerdeleaQLRELERKIEELEAQIEKKRKRLSElkA 924

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   253 KIAQLDSECQRLRILVRKRLPGPAALAKMKTEVEMLGKDHAkmRIRKSNPSPNGSVDLTSETApdtpnRNINFLSEQLCM 332
Cdd:TIGR02169  925 KLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEE--EIRALEPVNMLAIQEYEEVL-----KRLDELKEKRAK 997

                          330
                   ....*....|....
gi 565345574   333 LEEENRTLKEALNK 346
Cdd:TIGR02169  998 LEEERKAILERIEE 1011
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 29-300 1.40e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.30  E-value: 1.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    29 RNDEETLSSDKADLERelkvvTDKLSSALVECRAKDDFAQKQMKIAQEaiagwEKTETEARLLKQELEKALQQSIAGEER 108
Cdd:TIGR02169  197 RQQLERLRREREKAER-----YQALLKEKREYEGYELLKEKEALERQK-----EAIERQLASLEEELEKLTEEISELEKR 266

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   109 LVNLDAALKECMQQLRFIRDEQENRIHDAVSNASKEFEKTRFL----------LEKKLADAGQKLSRLGSENTQLSMALM 178
Cdd:TIGR02169  267 LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSiaekereledAEERLAKLEAEIDKLLAEIEELEREIE 346

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   179 AKEKATGHLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKELEIRNEER------------EFNRRTADVA-HK 245
Cdd:TIGR02169  347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREInelkreldrlqeELQRLSEELAdLN 426

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 565345574   246 QHLESVK-KIAQLDSECQRLRILVRKrlpgpaALAKMKTEVEMLGKDHAKMRIRKS 300
Cdd:TIGR02169  427 AAIAGIEaKINELEEEKEDKALEIKK------QEWKLEQLAADLSKYEQELYDLKE 476
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 40-286 3.33e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 3.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    40 ADLERELKVVTDKLSSALVEC-RAKDDFAQKQMKIAQeAIAGWEKTETEARLLKQELEKALQQSIAGEERLVNLDAALKE 118
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALaELRKELEELEEELEQ-LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   119 CMQQLRFIRDE-QENRIHDAVSNASKE--------FEKTRFLLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGHLKG 189
Cdd:TIGR02168  759 LEAEIEELEERlEEAEEELAEAEAEIEeleaqieqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   190 EIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKELEIRNEEREFNRRTADVAHKQHLESVKKIAQLDSECQRLRilvR 269
Cdd:TIGR02168  839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR---R 915

                          250
                   ....*....|....*..
gi 565345574   270 KRLPGPAALAKMKTEVE 286
Cdd:TIGR02168  916 ELEELREKLAQLELRLE 932
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
41-298 9.42e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.57  E-value: 9.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   41 DLERELKVVTDKLSsalvECRAKDDFAQKQMKIAQEAIAGWEKTETEARLLKQELEKaLQQSIAGEERlvnLDAALKECM 120
Cdd:PRK02224  210 GLESELAELDEEIE----RYEEQREQARETRDEADEVLEEHEERREELETLEAEIED-LRETIAETER---EREELAEEV 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  121 QQLRFIRDEQENRIHDAVSNAskEFEktrfllEKKLADAGQKLSRLGSENTQLSMALMAKEKATGHLKGEIDRAEADFSA 200
Cdd:PRK02224  282 RDLRERLEELEEERDDLLAEA--GLD------DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADD 353

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  201 LMTRlesvekdNASLRYEVRVLEKELEIRNEEREfNRRTadvahkqhlesvkKIAQLDSECQRLrilvRKRLPG-PAALA 279
Cdd:PRK02224  354 LEER-------AEELREEAAELESELEEAREAVE-DRRE-------------EIEELEEEIEEL----RERFGDaPVDLG 408

                         250
                  ....*....|....*....
gi 565345574  280 KMKTEVEMLGKDHAKMRIR 298
Cdd:PRK02224  409 NAEDFLEELREERDELRER 427
Yuri_gagarin pfam15934
Yuri gagarin; The yuri gagarin protein found in Drosophila, it plays roles in spermatogenesis.
 92-270 1.40e-04

Yuri gagarin; The yuri gagarin protein found in Drosophila, it plays roles in spermatogenesis.


Pssm-ID: 318204 [Multi-domain]  Cd Length: 234  Bit Score: 44.57  E-value: 1.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    92 KQELEKALQQSIAGEERLVNLDAALKECMQQlrfiRDEQENRIHDAVSNASKEFEKTR-----FLLEKKLADAGQKLSRL 166
Cdd:pfam15934   43 KNEQEQQLKEFTVQNQRLACQIDNLHETLKD----RDHQIKQLQSMITGYSDISENNRlkeeiHDLKQKNCVQARVVRKM 118

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   167 GSE---NTQLSMALMAK-EKATGHLK---GEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKELeIRNEEREFNRrt 239
Cdd:pfam15934  119 GLElkgQEEQRVELCDKyESLLGSFEeqcQELKRANRRVQSLQTRLSQVEKLQEELRTERKILREEV-IALKEKDAKS-- 195

                          170       180       190
                   ....*....|....*....|....*....|.
gi 565345574   240 adVAHKQHLESVKKIAQLDSEcqRLRILVRK 270
Cdd:pfam15934  196 --NGRERALQDQLKCCQTEIE--KSRTLIRN 222
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 775-928 1.44e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.20  E-value: 1.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   775 LEGKLEAETLRSDSLMVQLQESEKTIKGLEKEVENLRQSKGMIEDQIEKEKMVKEDLEMQFEAAKLELNEacrkaccLEK 854
Cdd:TIGR02168  738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE-------LRA 810

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 565345574   855 ELEDQNKSYKKLDSACHMLQLQKESTEKM--ELSENAEVDPEekllqsdwEITAASEKLAECQETILNLGKQLKAL 928
Cdd:TIGR02168  811 ELTLLNEEAANLRERLESLERRIAATERRleDLEEQIEELSE--------DIESLAAEIEELEELIEELESELEAL 878
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 44-330 1.54e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.88  E-value: 1.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    44 RELKVVTDKLSSALVECRAK-DDFAQKQMKIAQeaiAGWEKTETeARLLKQELEKALQQSIAGEERLVNLDAALKECMQQ 122
Cdd:pfam15921  607 QEFKILKDKKDAKIRELEARvSDLELEKVKLVN---AGSERLRA-VKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   123 LRFIRDEQE---NRIHDAVSNASKEFEKTRFLLEkkladagqklSRLGSENTQLSMALMAKEKATGHlKGEIDRAEADFS 199
Cdd:pfam15921  683 FRNKSEEMEtttNKLKMQLKSAQSELEQTRNTLK----------SMEGSDGHAMKVAMGMQKQITAK-RGQIDALQSKIQ 751

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   200 ALMTRLESVEKDNASLRYEVRVLEKELE---------------IRNEEREFNRRTA------DVAHKQHLESVKKIAQLD 258
Cdd:pfam15921  752 FLEEAMTNANKEKHFLKEEKNKLSQELStvateknkmagelevLRSQERRLKEKVAnmevalDKASLQFAECQDIIQRQE 831

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   259 SECQRLRI---LVRKRLPGPAALAKMKTEVEMLgKDHAKMRIRKSNPSPNGSVDLTSE------TAPDTPNRNINFLSEQ 329
Cdd:pfam15921  832 QESVRLKLqhtLDVKELQGPGYTSNSSMKPRLL-QPASFTRTHSNVPSSQSTASFLSHhsrktnALKEDPTRDLKQLLQE 910


                   .
gi 565345574   330 L 330
Cdd:pfam15921  911 L 911
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 51-291 2.37e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.43  E-value: 2.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    51 DKLSSALVECRAKDDFAQKQMKIAQEAIA-GWEKTETEARLL-------KQELEKALQQSIAGEERLVNLDAALKECMQQ 122
Cdd:TIGR02168  189 DRLEDILNELERQLKSLERQAEKAERYKElKAELRELELALLvlrleelREELEELQEELKEAEEELEELTAELQELEEK 268

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   123 LRFIRDEQ---ENRIHDAVS---NASKEFEKtrflLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGHLKGEIDRAEA 196
Cdd:TIGR02168  269 LEELRLEVselEEEIEELQKelyALANEISR----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   197 DFSALMTRLESVEKDNASLRYEVRVLEKELEIRNEEREfNRRTADVAHKQHLES--------VKKIAQLDSECQRLRILV 268
Cdd:TIGR02168  345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLE-TLRSKVAQLELQIASlnneierlEARLERLEDRRERLQQEI 423

                          250       260
                   ....*....|....*....|...
gi 565345574   269 RKRLPGPAALAKMKTEVEMLGKD 291
Cdd:TIGR02168  424 EELLKKLEEAELKELQAELEELE 446
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 749-928 2.56e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.06  E-value: 2.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   749 EVLPSVDNESQLPKDEFPEEGATKVDLEGKLEAETLRSDSL-------MVQLQESEKTIKGLEKEVENLRQSKGMIEDQI 821
Cdd:TIGR02169  791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLekeiqelQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   822 EKEKMVKEDLEMQFEAAKLELNEACRKACCLEKELEDQNKSYKKLDSACHMLQLQKESTEkmelSENAEVDPEEKLLQSD 901
Cdd:TIGR02169  871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE----EELSEIEDPKGEDEEI 946

                          170       180
                   ....*....|....*....|....*..
gi 565345574   902 WEITAASEKLaecQETILNLGKQLKAL 928
Cdd:TIGR02169  947 PEEELSLEDV---QAELQRVEEEIRAL 970
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 20-288 3.44e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 44.73  E-value: 3.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    20 EDKA-NLSLRRNDEETLSSDKADLERELKVVTDKLSSALVECRAKDDFAQKQMK-----IAQEAIA-GWEKTETEARL-- 90
Cdd:pfam17380  306 EEKArEVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKrelerIRQEEIAmEISRMRELERLqm 385

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    91 --------LKQELEKALQQSIAGEERlvnlDAALKECMQQLRFIRDEQENRIHDAVSNASKEFEKTRFLLEKKLADAGQK 162
Cdd:pfam17380  386 erqqknerVRQELEAARKVKILEEER----QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQ 461

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   163 LSRLGSENTQLSMALMAKEKAtghlkgEIDRAEADFSALMTRLESVEKDNASLRYEVR---VLEKELEIRNEE--REFNR 237
Cdd:pfam17380  462 VERLRQQEEERKRKKLELEKE------KRDRKRAEEQRRKILEKELEERKQAMIEEERkrkLLEKEMEERQKAiyEEERR 535

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 565345574   238 RTADVAHK--QHLESVKKIAqldsecQRLRILVRKRlpgpAALAKMKTEVEML 288
Cdd:pfam17380  536 REAEEERRkqQEMEERRRIQ------EQMRKATEER----SRLEAMEREREMM 578
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
69-265 3.82e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 44.37  E-value: 3.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   69 KQMKIAQEAIAGWEKTETEARLLKQELEKAlqqsiagEERLVNLDAALKECMQQLRFIRDEQENRihdavsNASKEFEKt 148
Cdd:COG4717    71 KELKELEEELKEAEEKEEEYAELQEELEEL-------EEELEELEAELEELREELEKLEKLLQLL------PLYQELEA- 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  149 rflLEKKLADAGQKLSRLGSENTQLSMALMAKEKatghLKGEIDRAEADFSALMTRL-ESVEKDNASLRYEVRVLEKELE 227
Cdd:COG4717   137 ---LEAELAELPERLEELEERLEELRELEEELEE----LEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLA 209

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 565345574  228 IRNEEREFNRRTADVAHKQhLESVKKIAQLDSECQRLR 265
Cdd:COG4717   210 ELEEELEEAQEELEELEEE-LEQLENELEAAALEERLK 246
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 67-270 5.09e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.60  E-value: 5.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   67 AQKQMKIAQEAIAgweKTETEARLLKQELEKALQQSIAGEERLVNLDAALKECMQQLRFIRDEQENrihdavsnASKEFE 146
Cdd:COG4942    32 LQQEIAELEKELA---ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE--------LRAELE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  147 KTRFLLEKKLADAgQKLSR-------LGSEN-TQLSMALMAKEKATGHLKGEIDRAEADFSALMTRLESVEKDNASLRYE 218
Cdd:COG4942   101 AQKEELAELLRAL-YRLGRqpplallLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 565345574  219 VRVLEKELEIRNEEREFNRRTADVAHKQHLESVKKIAQLDSECQRLRILVRK 270
Cdd:COG4942   180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 84-260 1.78e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.62  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   84 TETEARL--LKQELEKALQ-QSIAGEERLVNLDAALKEcMQQLRFIRDEQENRIHDAvSNASKEFEKTRFLLEKKLADAG 160
Cdd:COG1196   196 GELERQLepLERQAEKAERyRELKEELKELEAELLLLK-LRELEAELEELEAELEEL-EAELEELEAELAELEAELEELR 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  161 QKLSRLGSENTQLSMALMAkekatghLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKELEIRNEEREFNRRTA 240
Cdd:COG1196   274 LELEELELELEEAQAEEYE-------LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346

                         170       180
                  ....*....|....*....|
gi 565345574  241 DVAHKQHLESVKKIAQLDSE 260
Cdd:COG1196   347 EEAEEELEEAEAELAEAEEA 366
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
51-234 2.18e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.06  E-value: 2.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   51 DKLSSALVECRAK-DDFAQKQMKIAQ--EAIAGWEKTETEARLLKQELEKALQQSIAgEERLVNLDAALKECMQQLRFIR 127
Cdd:COG4717    74 KELEEELKEAEEKeEEYAELQEELEEleEELEELEAELEELREELEKLEKLLQLLPL-YQELEALEAELAELPERLEELE 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  128 DEQENRihdavsnasKEFEKTRFLLEKKLADAGQKLSRLGSENTQlsmalmAKEKATGHLKGEIDRAEADFSALMTRLES 207
Cdd:COG4717   153 ERLEEL---------RELEEELEELEAELAELQEELEELLEQLSL------ATEEELQDLAEELEELQQRLAELEEELEE 217

                         170       180
                  ....*....|....*....|....*..
gi 565345574  208 VEKDNASLRYEVRVLEKELEIRNEERE 234
Cdd:COG4717   218 AQEELEELEEELEQLENELEAAALEER 244
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 792-927 2.34e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 40.68  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  792 QLQESEKTIKGLEKEVENLRQSKGMIEDQIEKEKMVKEDLEMQFEAAKLELNEACRKAccleKELEDQ------NKSYKK 865
Cdd:COG1579    18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI----KKYEEQlgnvrnNKEYEA 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 565345574  866 LDSACHMLQLQKESTEKMELSENAEVDPEEKllqsdwEITAASEKLAECQETILNLGKQLKA 927
Cdd:COG1579    94 LQKEIESLKRRISDLEDEILELMERIEELEE------ELAELEAELAELEAELEEKKAELDE 149
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
28-224 2.65e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.93  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   28 RRNDEETLSSDKADLERELKVVTDKLSSA---LVECRAKDDFAQKQMKIAQEAIAGWEKTETEARLLKQ----ELEKALQ 100
Cdd:COG3206   203 QKNGLVDLSEEAKLLLQQLSELESQLAEAraeLAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaelEAELAEL 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  101 QSIAGEE--RLVNLDAALKECMQQLRfirdEQENRIHDAVSNASKEFEKTRFLLEKKLADAGQKLSRLGSENTQLSMalm 178
Cdd:COG3206   283 SARYTPNhpDVIALRAQIAALRAQLQ----QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRR--- 355

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 565345574  179 akekatghLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEK 224
Cdd:COG3206   356 --------LEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 88-277 2.78e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 40.68  E-value: 2.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   88 ARLLK-QELEKALQQSiagEERLVNLDAALKECMQQLRFIRDEQEnrihdAVSNASKEFEKTRFLLEKKLADAGQKLSRL 166
Cdd:COG1579     7 RALLDlQELDSELDRL---EHRLKELPAELAELEDELAALEARLE-----AAKTELEDLEKEIKRLELEIEEVEARIKKY 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  167 gseNTQLSMA-----LMAKEKATGHLKGEIDRAEADFSALMTRLESVEKDNASLRYEVRVLEKELEirNEEREFNRRTAD 241
Cdd:COG1579    79 ---EEQLGNVrnnkeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELE--EKKAELDEELAE 153

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 565345574  242 VAhkqhlesvKKIAQLDSECQRL------RIL-----VRKRLPGPAA 277
Cdd:COG1579   154 LE--------AELEELEAEREELaakippELLalyerIRKRKNGLAV 192
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 33-210 3.60e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 3.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    33 ETLSSDKADLERELKVVTDKLSSALVECRAKDDFAQKQMKIAQEAIAGWEKTETEARLLKQELEKALQQSIAGEERLVNL 112
Cdd:TIGR02168  326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   113 DAALKECMQQLRFIRDEQENRIHDAVSNASKEFEKTRFLLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGHLKGEID 192
Cdd:TIGR02168  406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485

                          170
                   ....*....|....*...
gi 565345574   193 RAEADFSALMTRLESVEK 210
Cdd:TIGR02168  486 QLQARLDSLERLQENLEG 503
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 784-926 4.22e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 41.22  E-value: 4.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  784 LRSDSLMVQLQESEKTIKGLEKEVENLRQSK--------GMIEDQIEKEKMVKEDLEMQFEAAKLELNEACRkaccLEKE 855
Cdd:COG0542   404 MEIDSKPEELDELERRLEQLEIEKEALKKEQdeasferlAELRDELAELEEELEALKARWEAEKELIEEIQE----LKEE 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  856 LEDQnksYKKLDSACHMLQLQKESTEKMELSENAEVDPEE--------------KLLQSDweitaaSEKLaecqetiLNL 921
Cdd:COG0542   480 LEQR---YGKIPELEKELAELEEELAELAPLLREEVTEEDiaevvsrwtgipvgKLLEGE------REKL-------LNL 543


                  ....*
gi 565345574  922 GKQLK 926
Cdd:COG0542   544 EEELH 548
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
 4-346 4.48e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 41.10  E-value: 4.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574    4 KSWPWKKKSTEKNMVTEDKANLSLRRNDEETLS---SDKADLERELKVVTDKLSSALVECRAKDDFAQKQMKIAQEAIAG 80
Cdd:COG5185   151 ASYGEVETGIIKDIFGKLTQELNQNLKKLEIFGltlGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIIN 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   81 WEKTETEARLLKQELEKaLQQSIAGEERLVNLDAALKecmqqLRFIRDEQEN--RIHDAVSNASKEFEKTRFLLEKKLAD 158
Cdd:COG5185   231 IEEALKGFQDPESELED-LAQTSDKLEKLVEQNTDLR-----LEKLGENAESskRLNENANNLIKQFENTKEKIAEYTKS 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  159 AGQKLSRLGSEN--------TQLSMALMAKEKATGHLKGEIDRAEADFSALMTRLESvEKDNASLRYEVRVLEKELEIRN 230
Cdd:COG5185   305 IDIKKATESLEEqlaaaeaeQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKE-EIENIVGEVELSKSSEELDSFK 383

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  231 EEREFNRRTADVAHKQHLESVKKIAQLDSECQRLRILVRKRLPGPAALAKMKTEVEMLGKDHAKMRIRKSNPSPNGSVDL 310
Cdd:COG5185   384 DTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQS 463

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 565345574  311 TSETAPDTPNRNI----NFLSEQLCMLEEENRTLKEALNK 346
Cdd:COG5185   464 RLEEAYDEINRSVrskkEDLNEELTQIESRVSTLKATLEK 503
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
61-234 5.27e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.05  E-value: 5.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574   61 RAKDDFAQKQMKIAQEAIAGWEKTETEARLLKQELEKALQQSIAGEERLVNLDAALKECMQQLRFIRDEQENRIHDAVSN 140
Cdd:COG4913   263 RYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  141 ASKEFEKtrflLEKKLADAGQKLSRLGSENTQLSMALMAKEKATGHLKGEIDRAEADFSALmtrLESVEKDNASLRYEVR 220
Cdd:COG4913   343 LEREIER----LERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEE---LEALEEALAEAEAALR 415

                         170
                  ....*....|....
gi 565345574  221 VLEKELEIRNEERE 234
Cdd:COG4913   416 DLRRELRELEAEIA 429
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 770-929 9.23e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 9.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  770 ATKVDLEGKLEAETLRSDSLMVQLQESEKTIKGLEKEVE-------NLRQSKGMIEDQIEKEKMVKEDLEMQFEAAKLEL 842
Cdd:COG1196   246 AELEELEAELEELEAELAELEAELEELRLELEELELELEeaqaeeyELLAELARLEQDIARLEERRRELEERLEELEEEL 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565345574  843 NEACRKACCLEKELEDQNKSYKKLDSACHMLQLQKESTEKMELSENAEVDPEEKLLQSDW-EITAASEKLAECQETILNL 921
Cdd:COG1196   326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAeELLEALRAAAELAAQLEEL 405


                  ....*...
gi 565345574  922 GKQLKALA 929
Cdd:COG1196   406 EEAEEALL 413
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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