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Conserved domains on  [gi|564732295|gb|AHC00221|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Eutropis cumingi]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-317 1.32e-135

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 389.18  E-value: 1.32e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   5 LIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  85 QLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPTILLAMGIMSTIVGGW 164
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 165 GGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAMLLML 244
Cdd:MTH00112 168 GGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLT 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564732295 245 LMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWRFQPK 317
Cdd:MTH00112 248 LLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-317 1.32e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 389.18  E-value: 1.32e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   5 LIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  85 QLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPTILLAMGIMSTIVGGW 164
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 165 GGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAMLLML 244
Cdd:MTH00112 168 GGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLT 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564732295 245 LMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWRFQPK 317
Cdd:MTH00112 248 LLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 20-265 5.41e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 5.41e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   20 SYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQPSC------ 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   93 -----ILLTVALAMKLGLTPLHFWLPEVLQGT-TLKTALIITTWQKLAPAALL--YLVQHSTNPT---ILLAMGIMSTIV 161
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGYGLIrrSLLYLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  162 GGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLALYILMTTPLFL-----TLMFTSSKTIKDLTTTWT 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 564732295  233 VSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-267 1.17e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 1.17e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   3 YALIMSSVAtGTIITVTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:COG1007  105 YALLLFATL-GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  82 DITQLTNQPS------------CILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNP- 148
Cdd:COG1007  184 NLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPg 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 149 ------TILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLALYILMTTPLFLTLMF 218
Cdd:COG1007  264 laadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILL 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 564732295 219 TSSK-----TIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQEL 267
Cdd:COG1007  344 LSRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 3-293 2.04e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.33  E-value: 2.04e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295    3 YALIMSSVaTGTIITVTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:TIGR01770 105 YILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   82 DITQLTNQPSC------------ILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALL-------YLV 142
Cdd:TIGR01770 184 NFEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  143 QHSTNPTILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLALYILMTTPLFLTLMF 218
Cdd:TIGR01770 264 FSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  219 TSS------KTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLR 292
Cdd:TIGR01770 344 LRSykdewiEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423


                  .
gi 564732295  293 L 293
Cdd:TIGR01770 424 V 424
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-317 1.32e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 389.18  E-value: 1.32e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   5 LIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  85 QLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPTILLAMGIMSTIVGGW 164
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 165 GGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAMLLML 244
Cdd:MTH00112 168 GGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLT 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564732295 245 LMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWRFQPK 317
Cdd:MTH00112 248 LLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-317 3.34e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 375.30  E-value: 3.34e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   4 ALIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDI 83
Cdd:MTH00135   7 TILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  84 TQLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQhSTNPTILLAMGIMSTIVGG 163
Cdd:MTH00135  87 QQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIA-PTNPTLLITLGLTSTLVGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 164 WGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAMLLM 243
Cdd:MTH00135 166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPL 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564732295 244 LLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWRFQPK 317
Cdd:MTH00135 246 ILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 3-317 4.97e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 372.33  E-value: 4.97e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   3 YAL--IMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:MTH00070   4 YALsiLLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGE 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  81 WDITQLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPTILLAMGIMSTI 160
Cdd:MTH00070  84 WTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00070 164 IGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSM 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564732295 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWRFQPK 317
Cdd:MTH00070 244 MMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-316 2.69e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 352.61  E-value: 2.69e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   1 IMYALIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:MTH00105   4 LILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQ 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  81 WDITQLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPTILLAMGIMSTI 160
Cdd:MTH00105  84 WTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSIL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00105 164 IGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSL 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564732295 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWRFQP 316
Cdd:MTH00105 244 ILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFEN 319
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-313 1.27e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 284.94  E-value: 1.27e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   1 IMYALIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:MTH00200   4 LILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQ 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  81 WDITQLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPTILLAMGIMSTI 160
Cdd:MTH00200  84 WGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00200 164 VGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSML 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564732295 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWR 313
Cdd:MTH00200 244 LGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR 316
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-313 1.98e-87

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 266.41  E-value: 1.98e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   1 IMYALIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:MTH00041   4 NVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  81 WDITQLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPTILLAMGIMSTI 160
Cdd:MTH00041  84 WSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00041 164 VGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFL 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564732295 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWR 313
Cdd:MTH00041 244 FILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWR 316
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-311 4.84e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 190.42  E-value: 4.84e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   1 IMYALIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWqtgt 80
Cdd:MTH00160   5 SSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML---- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  81 wdITQLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPaalLYLVQHSTNPTILLAMGIMSTI 160
Cdd:MTH00160  81 --NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIILSAI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564732295 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYK 311
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK 306
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-314 3.46e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 182.78  E-value: 3.46e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   5 LIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:MTH00144   8 LFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  85 qltnqpscILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAP-AALLYLVQHSTNPTILLAMGIMSTIVGG 163
Cdd:MTH00144  88 --------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPlFLLSNFLDLYWLAYLLCVISVLSALVGS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 164 WGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTwTVSPPITAMLLM 243
Cdd:MTH00144 160 IGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIIS 238

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564732295 244 LLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTSALTVFPTTTKNTYKWRF 314
Cdd:MTH00144 239 LLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN 309
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 4-268 2.01e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 165.34  E-value: 2.01e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   4 ALIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTInawqtgTWDI 83
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  84 TQLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPTILLAMGIMSTIVGG 163
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 164 WGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAMLLM 243
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*
gi 564732295 244 LLMSMGGLPPLTGFIPKWLILQELT 268
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLT 267
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 5-297 4.08e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.96  E-value: 4.08e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   5 LIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILF---ASTINAWqtgtw 81
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMggsLSFSNLY----- 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  82 ditqlTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPaaLLYLVQHSTNPTILLAMGIMSTIV 161
Cdd:MTH00197  77 -----LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLI 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 162 GGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVSPPITAML 241
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 564732295 242 LMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYTS 297
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 20-265 5.41e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 5.41e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   20 SYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQPSC------ 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   93 -----ILLTVALAMKLGLTPLHFWLPEVLQGT-TLKTALIITTWQKLAPAALL--YLVQHSTNPT---ILLAMGIMSTIV 161
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGYGLIrrSLLYLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  162 GGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLALYILMTTPLFL-----TLMFTSSKTIKDLTTTWT 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 564732295  233 VSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-264 1.75e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 103.17  E-value: 1.75e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  10 VATGTIITVTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDI----T 84
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  85 QLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNptILLAMGIMSTIVGGW 164
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 165 GGLNQTQMRKIMAFSSIANLGWMATILTINPN----IMLLNLALYILMTTPLF---LTLMFTSSkTIKDLTTTWTVSPPI 237
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFsiiLSLKLTKG-LIVEVSGLSRKNPVI 342

                        250       260
                 ....*....|....*....|....*..
gi 564732295 238 TAMLLMLLMSMGGLPPLTGFIPKWLIL 264
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
2-265 6.38e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 101.82  E-value: 6.38e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   2 MYALIMSSVAtGTIITVTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:PRK05777 105 FYLLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGS 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  81 WDITQLTNQPS------------CILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAP-AALLYLVQ---- 143
Cdd:PRK05777 184 LSFAGIAKALAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfAVLLRLLVvafg 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 144 --HSTNPTILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLALYILMTTPLFLTLM 217
Cdd:PRK05777 264 glSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFGVIS 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 564732295 218 FTSSK-----TIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:PRK05777 344 LLRRKggeaeSISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFE 396
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 10-293 8.99e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.10  E-value: 8.99e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  10 VATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNP-RATEATTKYFLTQAAASATILFASTINAWQTGTWDI--TQL 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  87 TNQPSC-----------ILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLylVQHSTNPTILLAMG 155
Cdd:MTH00196  82 VLNSGQsfssvsvpigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSIL--VSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 156 IMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINP----NIMLLNLALYILMTTPLFLTLMFTSSKT--IKDLTT 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564732295 230 TWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRL 293
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-267 1.17e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 1.17e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   3 YALIMSSVAtGTIITVTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:COG1007  105 YALLLFATL-GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  82 DITQLTNQPS------------CILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNP- 148
Cdd:COG1007  184 NLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPg 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 149 ------TILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLALYILMTTPLFLTLMF 218
Cdd:COG1007  264 laadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILL 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 564732295 219 TSSK-----TIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQEL 267
Cdd:COG1007  344 LSRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 3-293 2.04e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.33  E-value: 2.04e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295    3 YALIMSSVaTGTIITVTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:TIGR01770 105 YILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   82 DITQLTNQPSC------------ILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALL-------YLV 142
Cdd:TIGR01770 184 NFEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  143 QHSTNPTILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLALYILMTTPLFLTLMF 218
Cdd:TIGR01770 264 FSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  219 TSS------KTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLR 292
Cdd:TIGR01770 344 LRSykdewiEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423


                  .
gi 564732295  293 L 293
Cdd:TIGR01770 424 V 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-265 1.43e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 88.67  E-value: 1.43e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   1 IMYALIMSSVAtGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:COG0651  108 RFYPLFLLLLA-GMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGT 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  81 WDITQLTN----------QPSCILLTVALAMKLGLTPLHFWLPE-----------VLQGTTLKTAL--IITTWQKLAPAA 137
Cdd:COG0651  187 LNMADLAArlaeldpgllLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGAD 266

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 138 LLYLVQhstnpTILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTpLFLTLM 217
Cdd:COG0651  267 PALFLG-----TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHA-LAKALL 340

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 564732295 218 F---------TSSKTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:COG0651  341 FlaagaieraTGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 10-187 3.24e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 67.19  E-value: 3.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  10 VATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRAT---------EATTKYFLTQAAASATILFASTINAWQTG- 79
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGn 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  80 -------------TWDITQLTNQPSCILLTVALAMKLGLTPLHFWLPEVLQGT-TLKTALIITTWQKLAPAALLYLVQHS 145
Cdd:MTH00198 277 egmlgtilsatleTTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGApTPTTALIAIIPKFTVYILLTSLVITS 356

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 564732295 146 TnptILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWM 187
Cdd:MTH00198 357 K---LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-276 2.43e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.63  E-value: 2.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   2 MYALIMSsvaTGTIITVTSYHWLLAWIGLELNTLA---IIPIIAKqhnpRATEATTKYFLTQAAASATILFASTINAWQT 78
Cdd:PRK08668 102 MFALMSL---AGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  79 GTWDITQ----LTNQPS-------CILLTVALAMKLGLTPLHFWLPE-----------VLQGTTLKT-ALIITTWQKLAP 135
Cdd:PRK08668 175 GTFDFADisqgLINDTStgfalivFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 136 AALLY--LVQHSTNPT---ILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNlALYILMTT 210
Cdd:PRK08668 255 GTKLFseFGTYRGVPLfnyILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAG-GLFHVFNH 333

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564732295 211 PLFLTLMFTSSKTIKDLTTTWTVSP--------PIT-AMLLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATA 276
Cdd:PRK08668 334 ALFKGLFFLIFAAVIYRTGTTKISEmggliekmPFTfAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
ndhB CHL00049
NADH dehydrogenase subunit 2
 48-260 3.22e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 63.87  E-value: 3.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  48 RATEATTKYFLTQAAASATILFAST----INAWQTGTWDI------TQLTNQPSC----ILLTVALAMKLGLTPLHFWLP 113
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSwlygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 114 EVLQGTTLKTALIITTWQKLAPAALL---------YLVQHSTNPTILLAmgIMSTIVGGWGGLNQTQMRKIMAFSSIANL 184
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALAtrifdipfyFSSNEWHLLLEILA--ILSMILGNLIAITQTSMKRMLAYSSIGQI 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 185 GW-MATILTINPNI----MLLNLALYILMTTPLFLTLMFTSSKT----IKDLTTTWTVSPPITAMLLMLLMSMGGLPPLT 255
Cdd:CHL00049 317 GYvIIGIIVGDSNDgyasMITYMLFYIFMNLGTFACIVLFGLRTgtdnIRDYAGLYTKDPFLALSLALCLLSLGGIPPLA 396


                 ....*
gi 564732295 256 GFIPK 260
Cdd:CHL00049 397 GFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-260 8.45e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.60  E-value: 8.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  46 NPRATEATTKYFLTQAAASATILFAST----INAWQTGTWDITQ-LTNQPScILLTVAL-------AMKLGLTPLHFWLP 113
Cdd:PRK02504 156 DPRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALaLITSPS-LGLALALvfviagiAFKISAVPFHQWTP 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 114 EVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNP-------TILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGW 186
Cdd:PRK02504 235 DVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGF 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 187 MATILTINPN----IMLLNLALYILMTTPLFLTLMFTSSKT----IKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFI 258
Cdd:PRK02504 315 VMIGLVAGTEagyaSMVFYLLAYLFMNLGAFACVILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                 ..
gi 564732295 259 PK 260
Cdd:PRK02504 395 GK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 2-265 2.31e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 55.33  E-value: 2.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295    2 MYALIMSsVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTG-T 80
Cdd:TIGR01972 108 FYALLLL-LEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgT 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   81 WDITQLTNQPSC--------ILLTVALAMKLGLTPLHFWLPEV-----------LQGTTLKTAL--IITTWQKLAPAALL 139
Cdd:TIGR01972 187 FDLLELLNLPLPfgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhveaptagsviLAGVLLKMGTygFLRFNLPLFPDASL 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  140 YLVqhstnpTILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMAT-ILTINPNIMLLNLALYI---LMTTPLFLT 215
Cdd:TIGR01972 267 YFA------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLgIFSFNELGISGAVFQMIshgLITAALFLL 340

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 564732295  216 LMF----TSSKTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:TIGR01972 341 VGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 77-260 2.31e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 52.62  E-value: 2.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  77 QTGTWDITQL-TNQPSCILLTVALAM-------KLGLTPLHFWLPEVLQGTTLKTALiittwqkLAPAAL----LYLVQH 144
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAY-------LHAAAMvkagIYLVAR 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 145 -----STNPT---ILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTI-NPNIMLLNLALYI---LMTTPL 212
Cdd:PRK12644 256 lapgfADVPVwrpTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMLLahaLFKAAL 335

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 564732295 213 FLTLMF----TSSKTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPK 260
Cdd:PRK12644 336 FLVVGIidhsTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-267 3.11e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.80  E-value: 3.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  30 LELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQ--PSCILLT------VALAM 101
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGAlaENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 102 KLGLTPLHFWLPEVLQGTT-LKTALIITTWQKLAPAAL--LYLV-------QHSTNPTILLAMGIMSTIVGGWGGLNQTQ 171
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALirIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 172 MRKIMAFSSIANLGWMATILTINPNIMLLNLALYI----LMTTPLFLTL----MFTSSKTIKDLTTTWTVSPPITAMLLM 243
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260
                 ....*....|....*....|....
gi 564732295 244 LLMSMGGLPPLTGFIPKWLILQEL 267
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGA 398
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-263 1.22e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.10  E-value: 1.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  30 LELNTLAIIPIIAKQHN-PRATEATTKYFLTQAAASATILFASTINAWQTGTWDI----------TQLTNQPSCILLTVA 98
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMaylavkmsenPTVVAKIALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  99 LAMKLGLTPLHFWLPEVLQG--TTLKTALIITTWQKLAPAA----LLYLVQHSTN--PTILLAMGIMSTIVGGWGGLNQT 170
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALArvlfSIYGPAINLAtvGWVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 171 QMRKIMAFSSIANLGWMATILTI-----------NPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTTWTVS----- 234
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLGLGVglaalgdpamaSYGEIALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNelggl 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 564732295 235 ----PPITAMLLMLLMSMGGLPPLTGFIPKWLI 263
Cdd:PRK08376 390 artmPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-264 3.95e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.19  E-value: 3.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  93 ILLTVALAMKLGLTPLHFWLPEV-----------LQGTTLKTA--LIITTWQKLAPAALLYLVQHSTNptILLAMGIMST 159
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAyseapsfisvfFSGTSTKVMiyLIIRIVYDVFKANFVFTTLPFNN--VFMILAALAI 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 160 IVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYI----LMTTPLFLTLMFTSSK----TIKDLTTTW 231
Cdd:PRK12662 291 VFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISYHfgttKLEDCLNLW 370

                        170       180       190
                 ....*....|....*....|....*....|...
gi 564732295 232 TVSPPITAMLLMLLMSMGGLPPLTGFIPKWLIL 264
Cdd:PRK12662 371 KSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 24-185 3.95e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 48.49  E-value: 3.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  24 LLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTG--TWDITQLTNQPS-------CIL 94
Cdd:PRK12561 110 LLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDtfTFDLAELGAKSYplalellLYA 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  95 -LTVALAMKLGLTPLHFWLPE-----------VLQGTTLKT---ALIITTWQKLaPAALLYLVqhstnpTILLAMGIMST 159
Cdd:PRK12561 190 gFLIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMggyALIRFNVQML-PDAHVYFA------PALAILGVVNI 262

                        170       180
                 ....*....|....*....|....*.
gi 564732295 160 IVGGWGGLNQTQMRKIMAFSSIANLG 185
Cdd:PRK12561 263 IYGALNAFAQDNVKRRLAYSSVSHMG 288
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 35-264 8.89e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 47.00  E-value: 8.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  35 LAIIP---IIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTG--TWDITQLTNQP--------SCILLTVALAM 101
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGalTFDIAELAAAPlpltaqllLFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 102 KLGLTPLHFWLPE-----------VLQGTTLKTA------LIITtwqkLAPAALLYLVqhstnpTILLAMGIMSTIVGGW 164
Cdd:COG1008  222 KVPMFPFHTWLPDahveaptagsvLLAGVLLKMGgygllrFALP----LFPEASAYFA------PLLAALGVIGIIYGAL 291

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 165 GGLNQTQMRKIMAFSSIANLGWMAT-ILTINPN----IMLLNLAlYILMTTPLFLTLMF----TSSKTIKDLTTTWTVSP 235
Cdd:COG1008  292 VALAQTDLKRLIAYSSVSHMGFVLLgIFALNPLglqgAVLQMVS-HGLITAALFLLVGVlydrTHTRDIADLGGLAKRMP 370

                        250       260
                 ....*....|....*....|....*....
gi 564732295 236 PITAMLLMLLMSMGGLPPLTGFIPKWLIL 264
Cdd:COG1008  371 VLAALFLLAALASLGLPGTSGFVGEFLVL 399
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 25-220 1.61e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 1.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  25 LAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAA------SATILFASTINAWQTGTWDITQLTNQP-------- 90
Cdd:PRK08676 126 LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHAsllspsvl 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  91 --SCILLTVALAMKLGLTPLHFWLPEV-LQGTTLKTALIITTWQKLAPAALLYLVQ-------HSTNPTILLAMGIMSTI 160
Cdd:PRK08676 206 gaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLGIFSIA 285

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYILMTTPLFLTLMFTS 220
Cdd:PRK08676 286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSA 345
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 97-262 2.78e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 45.68  E-value: 2.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  97 VALAMKLGLTPLHFWLPE-----------VLQGTTLKT---ALIITTW-------QKLAPAallylvqhstnptiLLAMG 155
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLggyGLVRLSWpilplgaQNLAPA--------------VIAMG 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 156 IMSTIVGGWGGLNQTQMRKIMAFSSIANLGwMATILTINPNIMLLNLALYILMTTPLFLTLMFTSSKTIKDLTTT----- 230
Cdd:MTH00226 304 IVGIVYGSFATCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTrliky 382

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 564732295 231 ---WTVSPPITAMLLMLLMSM-GGLPPLTGFIPKWL 262
Cdd:MTH00226 383 yrgLSITMPIWGTIMIVTSLAnVAVPPSGNFIGEYL 418
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 21-267 8.85e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 44.11  E-value: 8.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  21 YHWLLAWiglELNTLA-IIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQP-SCILLTVA 98
Cdd:PRK06521 136 FSFLVAW---ETMSLSsWFLVIANHREAEIRRAGFLYLLMAHAGALAILLAFGLLARESGSYDFAAMRAAHlSPFWASLV 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  99 LA-------MKLGLTPLHFWLPE-----------VLQGTTLKTAL--IITTWQKLAPAALLYLvqhstnPTILLAMGIMS 158
Cdd:PRK06521 213 FLlalfgfgAKAGLVPLHVWLPRahpaapshvsaLMSGVMLKVAIygILRVVFDLLGAPGWWW------GVLVLALGAIS 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 159 TIVGGWGGLNQTQMRKIMAFSSIANLGW--------MATILTINPNIMLLNL--ALYILMTTPLFLTLMFTSSKTIkdLT 228
Cdd:PRK06521 287 AVLGVLYALAEHDLKRLLAYSTIENIGIifvglglaMVFIAYGMPLLAALALtaALYHLLNHALFKSLLFLGAGAV--LH 364

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 564732295 229 TTWTVS----------PPITAMLLML-LMSMGGLPPLTGFIPKWLILQEL 267
Cdd:PRK06521 365 ATGTRDmeklgglirrMPWTAWAFLIgCLAISALPPLNGFVSEWLLLQSL 414
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 2-265 1.07e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.77  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   2 MYALIMSSVatgtIITVTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASA-----TILF---ASTI 73
Cdd:PRK06458 113 MYQLFLFTM----LLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAfalfgTILVyanAATV 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  74 NAWQTGTWDITQLTNQ-----PSCILLTVALAM-----KLGLTPLHFWLPE-----------VLQGTTLKTAL-IITTWQ 131
Cdd:PRK06458 189 MGDGEMAILWTELLKHaslldPTLMKLAFVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYY 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 132 KLAPAALlylvQHSTNPTILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTIN-PnimLLNLALYILMT- 209
Cdd:PRK06458 269 ILIDAAI----GSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGgP---LGIFAALLHMLn 341

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564732295 210 -----TPLFLT----LMFTSSKTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:PRK06458 342 hsltkSAIFFAsgnvLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 76-265 1.14e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 43.66  E-value: 1.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  76 WQT-GTWDITQLTNQPSCILL--------TVALAMKLGLTPLHFWLPEV-LQGTTLKTALIITTWQKLAPAALLYLVQHS 145
Cdd:PRK08042 158 WQRyGTLDLRLLDMRMQQLPLgsdiwllgVIGFGLLAGIIPLHGWVPQAhANASAPAAALFSTVVMKIGLLGILTLSLLG 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 146 TNP-----TILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLG--------WMATILTINPNIMLLNL--ALYILMTT 210
Cdd:PRK08042 238 GNAplwwgVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLvgGLYHLLNH 317

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564732295 211 PLFLTLMF---------TSSKTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:PRK08042 318 SLFKSVLFlgagsvwfrTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQ 381
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 2-193 1.79e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 43.22  E-value: 1.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   2 MYALIMSSVATGTIITVTSYHwllAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:PRK08377 112 MLFLLLMLGATGMIATGDIFN---LFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  82 DITQLTNQPSCILLTVA----------LAMKLGLTPLHFWLPEVLQGT----TLKTALIITTWQKLAPAALLYLVQHSTN 147
Cdd:PRK08377 189 NMAHIAQLAGTIDPTVAqvglallifgLAVEAELFPLNAWAPDAYQAAphpiTVMFSAFVVKAGLYAMARILYLMQNANG 268

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 564732295 148 PT----ILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTI 193
Cdd:PRK08377 269 WSsvlkLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALAL 318
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 93-268 2.59e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 42.64  E-value: 2.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  93 ILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTwqKLAPAALLYLVQH----STNPTILLAMGIMSTIVGGWG--- 165
Cdd:MTH00032 229 ILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAA--TMVTAGVFLMIRSfplfEKAPLTLLIITIFGALTAFFAatv 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 166 GLNQTQMRKIMAFSSIANLGWMATILTINPNimlLNLALYILMTTPLFLTLMFTSSKTIKDLTTT----------WTVSP 235
Cdd:MTH00032 307 GLVQNDLKKVIAYSTCSQLGYMVLIIGIEGS---HNVGLFHLVNHAFFKALLFLSAGSVIHSTTVdeqdmrkmggLIHSI 383

                        170       180       190
                 ....*....|....*....|....*....|....
gi 564732295 236 PITAMLLML-LMSMGGLPPLTGFIPKWLILqELT 268
Cdd:MTH00032 384 PFTYTMMLIgSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
93-265 2.60e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  93 ILLTVALAMKLGLTPLhFWLPEVLQG-TTLKTALIITTWQKLAPAAL------LYLVQHSTNPTILLAMGIMSTIVGGWG 165
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTpNTEVAALFAALLTKVGIYALirvftlLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 166 GLNQTQMRKIMAFSSIANLGWMATILTINpNIMLLNLALYILMTTPLFLTLMF---------TSSKTIKDLTTTWTVSPP 236
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFYLVHDMVVKTALFliagslvrlTGYRSLQYLGGLYRKEPL 368

                        170       180
                 ....*....|....*....|....*....
gi 564732295 237 ITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:PRK12663 369 FGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 92-224 3.28e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 42.37  E-value: 3.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  92 CILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTwqKLAPAALLYLVQHS----TNPTILLAMGI---MSTIVGGW 164
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAA--TMVTAGVFLLIRSSplfeQAPLALIIVTIvgsLTVFFAAT 290

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 165 GGLNQTQMRKIMAFSSIANLGWMATILTINpnimLLNLALYILMTTPLFLTLMFTSSKTI 224
Cdd:MTH00020 291 VGLVQNDLKKVIAYSTCSQLGYMVVACGLS----HYSISLFHLMNHAFFKALLFLSAGSV 346
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 75-187 3.92e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 3.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  75 AWQTGTWDITQLTNQPSCI----LLTVALAM-------KLGLTPLHFWLPE----------VLQGTTLKTA---LIITTW 130
Cdd:COG1009  186 GAIAGTLNFSELLAAAPTIlsspLLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsaLLHAATMVKAgvyLLARLS 265

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 564732295 131 Q--KLAPAALlylvqhstnpTILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWM 187
Cdd:COG1009  266 PlfALSPVWL----------TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK12650 PRK12650
DUF4040 family protein;
5-260 4.41e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 4.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   5 LIMSSVATGTIITVTSYHWLLAWIGLELNTLAIIPIIAKQhNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:PRK12650 114 LLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIARS-GSGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLS 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  85 QLTNQPS-----------CILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALiittwqkLAPAAL----LYLVQH----- 144
Cdd:PRK12650 193 GILHSDVwaekpglttvvAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAF-------LHAAAVvkagIYLLLRfspvf 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 145 STNPT---ILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWM-ATILTINPNIM---LLNLALYILMTTPLFLTLM 217
Cdd:PRK12650 266 HDVAVwnwLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPFALtaaVVHTLAHALFKSSLFMLIG 345

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 564732295 218 F----TSSKTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPK 260
Cdd:PRK12650 346 VvdhqAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
3-187 6.98e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.22  E-value: 6.98e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295   3 YALIMSSVATGTIITVTSYHWLL---AW--IGLELNTLaiipIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQ 77
Cdd:PRK08168 102 YVRALAGVLAAVHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLE 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  78 TGTWDITQLTN-----------QPSCILLTVALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLY---LVQ 143
Cdd:PRK08168 178 VGSLSLSALWAhlaaqgaspslQAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIRfapLLE 257

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 564732295 144 HSTNP-TILLAMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWM 187
Cdd:PRK08168 258 QAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 24-265 2.20e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 39.75  E-value: 2.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  24 LLAWIGLELntLAIIPIIAKQhNPRATEATTKYFLTQAAASATILFASTINAWQtGTWDITQLTNQPSCILLTVAL---A 100
Cdd:MTH00207 114 LLGWDGLGL--VSFILVIYYQ-NPKSLGAGMITALTNRIGDVMLLLSIGWTLNQ-GHWSITNMWQTDMNNYIALSImiaA 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 101 M-KLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALL---YLVQHST---NPTILLaMGIMSTIVGGWGGLNQTQMR 173
Cdd:MTH00207 190 MtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfYPFLSSTywfNPALLL-TASLTMLMAGLSAMTECDMK 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 174 KIMAFSSIANLGWMATILTINpnimLLNLALYILMTTPLFLTLMFTSSKTI-------KDLTT---TWTVSPPITAMLLM 243
Cdd:MTH00207 269 KIIALSTLSQLGVMMASLGLG----MPKLALFHLITHALFKALLFVCAGSLihshhhsQDLRTmgnLTNQMPLTTSCLLI 344

                        250       260
                 ....*....|....*....|..
gi 564732295 244 LLMSMGGLPPLTGFIPKWLILQ 265
Cdd:MTH00207 345 ANLALCGSPFLSGFYSKDLILE 366
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 94-296 7.23e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 38.03  E-value: 7.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295  94 LLTVALAMKLGLTPLHFWLPEV-----------LQGTTLKTA---------LIITTWQKLAPAALLYLVqhstnptILLA 153
Cdd:PRK12667 228 LALWAFTIKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSP-------ILII 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732295 154 MGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLALYIL----MTTPLFLT----LMFTSSKTIK 225
Cdd:PRK12667 301 LGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiAKSLLFLAsgvfIHAAGTRDID 380

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564732295 226 DLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTATATVLALSALLSLFFYLRLSYT 296
Cdd:PRK12667 381 ELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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