NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|564382123|ref|XP_006250473|]
View 

consortin isoform X2 [Rattus norvegicus]

Protein Classification

Consortin_C domain-containing protein( domain architecture ID 10633794)

Consortin_C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Consortin_C pfam15281
Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting ...
 608-719 2.48e-68

Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting connexins to the plasma membrane.


:

Pssm-ID: 464611  Cd Length: 113  Bit Score: 219.53  E-value: 2.48e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382123  608 EAIPAEGLVSILKKRNDAVGG-HPAQMQQKPSKRRVRFQEIDDNLDQDEVGGGSCVLLILLCIATVFLSVGGTALYCTLG 686
Cdd:pfam15281   1 EISPAEGLVSILKKRRSSEDGsTLTQSQKQQSKRRVRFQEPDDGLDQDEVGGDSCLLLLLLCLVTVVISVGGTALYCTLG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564382123  687 DMESPVCTDFADNVDFYYTKLLQGVAGLKHWVY 719
Cdd:pfam15281  81 DTESSVCTDFAQNVDFYYTQIQRGIAELKHWLT 113
 
Name Accession Description Interval E-value
Consortin_C pfam15281
Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting ...
 608-719 2.48e-68

Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting connexins to the plasma membrane.


Pssm-ID: 464611  Cd Length: 113  Bit Score: 219.53  E-value: 2.48e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382123  608 EAIPAEGLVSILKKRNDAVGG-HPAQMQQKPSKRRVRFQEIDDNLDQDEVGGGSCVLLILLCIATVFLSVGGTALYCTLG 686
Cdd:pfam15281   1 EISPAEGLVSILKKRRSSEDGsTLTQSQKQQSKRRVRFQEPDDGLDQDEVGGDSCLLLLLLCLVTVVISVGGTALYCTLG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564382123  687 DMESPVCTDFADNVDFYYTKLLQGVAGLKHWVY 719
Cdd:pfam15281  81 DTESSVCTDFAQNVDFYYTQIQRGIAELKHWLT 113
 
Name Accession Description Interval E-value
Consortin_C pfam15281
Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting ...
 608-719 2.48e-68

Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting connexins to the plasma membrane.


Pssm-ID: 464611  Cd Length: 113  Bit Score: 219.53  E-value: 2.48e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382123  608 EAIPAEGLVSILKKRNDAVGG-HPAQMQQKPSKRRVRFQEIDDNLDQDEVGGGSCVLLILLCIATVFLSVGGTALYCTLG 686
Cdd:pfam15281   1 EISPAEGLVSILKKRRSSEDGsTLTQSQKQQSKRRVRFQEPDDGLDQDEVGGDSCLLLLLLCLVTVVISVGGTALYCTLG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564382123  687 DMESPVCTDFADNVDFYYTKLLQGVAGLKHWVY 719
Cdd:pfam15281  81 DTESSVCTDFAQNVDFYYTQIQRGIAELKHWLT 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH