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Conserved domains on  [gi|564349812|ref|XP_006237749|]
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coiled-coil domain-containing protein 91 isoform X6 [Rattus norvegicus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 108-358 1.16e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 1.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 108 KISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSsVKQQLDAIEKQYVSAIEK 187
Cdd:COG1196  233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYE-LLAELARLEQDIARLEER 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 188 QAHRCEELLHAQHQrlLEVLDTEKELLKEKIQEALTQQSQEQKEtlgkclQEEMQKNKETLESAVKLEKEAMKDVITKAV 267
Cdd:COG1196  311 RRELEERLEELEEE--LAELEEELEELEEELEELEEELEEAEEE------LEEAEAELAEAEEALLEAEAELAEAEEELE 382

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 268 EEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVRE 347
Cdd:COG1196  383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462

                        250
                 ....*....|.
gi 564349812 348 QRRLDQVTRQR 358
Cdd:COG1196  463 ELLAELLEEAA 473
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 108-358 1.16e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 1.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 108 KISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSsVKQQLDAIEKQYVSAIEK 187
Cdd:COG1196  233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYE-LLAELARLEQDIARLEER 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 188 QAHRCEELLHAQHQrlLEVLDTEKELLKEKIQEALTQQSQEQKEtlgkclQEEMQKNKETLESAVKLEKEAMKDVITKAV 267
Cdd:COG1196  311 RRELEERLEELEEE--LAELEEELEELEEELEELEEELEEAEEE------LEEAEAELAEAEEALLEAEAELAEAEEELE 382

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 268 EEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVRE 347
Cdd:COG1196  383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462

                        250
                 ....*....|.
gi 564349812 348 QRRLDQVTRQR 358
Cdd:COG1196  463 ELLAELLEEAA 473
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 106-386 6.92e-08

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 54.36  E-value: 6.92e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  106 RQKISSLETKLKASEEEKQRIKKDVESL-MEKHSVLEKDFLKEKEQDAVSFQ--------ARYRELQALL------QSSV 170
Cdd:pfam17380 315 RRKLEEAEKARQAEMDRQAAIYAEQERMaMERERELERIRQEERKRELERIRqeeiameiSRMRELERLQmerqqkNERV 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  171 KQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEVLDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEM 241
Cdd:pfam17380 395 RQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRRLEEERAREMERVRLE-EQERQQQVERLRQ--QEEE 471

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  242 QKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAE 321
Cdd:pfam17380 472 RKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEE-----ERKRKLLEKEMEERQKAIYEEERRREAE 539

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564349812  322 EQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQLSAliATEPVDIE 386
Cdd:pfam17380 540 EERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
PTZ00121 PTZ00121
MAEBL; Provisional
 113-340 2.59e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 49.75  E-value: 2.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  113 ETKLKASEEEK-QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSAIEKQAHR 191
Cdd:PTZ00121 1474 EAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  192 CEELLHAQHQRLLEVLDTEKELLKEKIQEA-LTQQSQEQKETLGKCLQEEMQKNKEtlESAVKLEKEAMKDVITKAVEEE 270
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAeEAKKAEEARIEEVMKLYEEEKKMKA--EEAKKAEEAKIKAEELKKAEEE 1631

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564349812  271 RENLEKV-HAEEREMWKTEHARDQERvaEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDE 340
Cdd:PTZ00121 1632 KKKVEQLkKKEAEEKKKAEELKKAEE--ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 107-335 4.22e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 4.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   107 QKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQALLQSS---VKQQLDAIEKQY 181
Cdd:TIGR02168  267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKldeLAEELAELEEKL 346

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   182 ------VSAIEKQAHRCEELLHAQHQRLLEvLDTEKELLKEKIQEALTQQSQEQK-----ETLGKCLQEEMQKNKETLES 250
Cdd:TIGR02168  347 eelkeeLESLEAELEELEAELEELESRLEE-LEEQLETLRSKVAQLELQIASLNNeierlEARLERLEDRRERLQQEIEE 425

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   251 AVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAM 330
Cdd:TIGR02168  426 LLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504


                   ....*
gi 564349812   331 EEAVK 335
Cdd:TIGR02168  505 SEGVK 509
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 108-358 1.16e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 1.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 108 KISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSsVKQQLDAIEKQYVSAIEK 187
Cdd:COG1196  233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYE-LLAELARLEQDIARLEER 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 188 QAHRCEELLHAQHQrlLEVLDTEKELLKEKIQEALTQQSQEQKEtlgkclQEEMQKNKETLESAVKLEKEAMKDVITKAV 267
Cdd:COG1196  311 RRELEERLEELEEE--LAELEEELEELEEELEELEEELEEAEEE------LEEAEAELAEAEEALLEAEAELAEAEEELE 382

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 268 EEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVRE 347
Cdd:COG1196  383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462

                        250
                 ....*....|.
gi 564349812 348 QRRLDQVTRQR 358
Cdd:COG1196  463 ELLAELLEEAA 473
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 104-353 3.34e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 55.71  E-value: 3.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQyvS 183
Cdd:COG1196  278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER-LEELEEELAELEEELEELEEELEELEEELEEAEEEL--E 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 184 AIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEkIQEALTQQSQEQKETLGkcLQEEMQKNKETLESAVKLEKEAMKDVI 263
Cdd:COG1196  355 EAEAELAEAEEALLEAEAELAEAEEELEELAEE-LLEALRAAAELAAQLEE--LEEAEEALLERLERLEEELEELEEALA 431

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 264 TKAVEEERENLEkvhAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVE 343
Cdd:COG1196  432 ELEEEEEEEEEA---LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508

                        250
                 ....*....|
gi 564349812 344 YVREQRRLDQ 353
Cdd:COG1196  509 GVKAALLLAG 518
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 106-386 6.92e-08

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 54.36  E-value: 6.92e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  106 RQKISSLETKLKASEEEKQRIKKDVESL-MEKHSVLEKDFLKEKEQDAVSFQ--------ARYRELQALL------QSSV 170
Cdd:pfam17380 315 RRKLEEAEKARQAEMDRQAAIYAEQERMaMERERELERIRQEERKRELERIRqeeiameiSRMRELERLQmerqqkNERV 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  171 KQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEVLDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEM 241
Cdd:pfam17380 395 RQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRRLEEERAREMERVRLE-EQERQQQVERLRQ--QEEE 471

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  242 QKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAE 321
Cdd:pfam17380 472 RKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEE-----ERKRKLLEKEMEERQKAIYEEERRREAE 539

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564349812  322 EQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQLSAliATEPVDIE 386
Cdd:pfam17380 540 EERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 115-381 4.26e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.25  E-value: 4.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 115 KLKASEEEKQR--IKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSsVKQQLDAIEKQYVSAIEKqahrc 192
Cdd:COG1196  217 ELKEELKELEAelLLLKLRELEAELEELEAE-LEELEAELEELEAELAELEAELEE-LRLELEELELELEEAQAE----- 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 193 EELLHAQHQRLLEVLDTEKELLKEkIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERE 272
Cdd:COG1196  290 EYELLAELARLEQDIARLEERRRE-LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 273 NLEKVHAEEREMWKtEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLD 352
Cdd:COG1196  369 EAEAELAEAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447

                        250       260
                 ....*....|....*....|....*....
gi 564349812 353 QVTRQRSLSSLELFLSCAQKQLSALIATE 381
Cdd:COG1196  448 AEEEAELEEEEEALLELLAELLEEAALLE 476
PTZ00121 PTZ00121
MAEBL; Provisional
 113-340 2.59e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 49.75  E-value: 2.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  113 ETKLKASEEEK-QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSAIEKQAHR 191
Cdd:PTZ00121 1474 EAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  192 CEELLHAQHQRLLEVLDTEKELLKEKIQEA-LTQQSQEQKETLGKCLQEEMQKNKEtlESAVKLEKEAMKDVITKAVEEE 270
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAeEAKKAEEARIEEVMKLYEEEKKMKA--EEAKKAEEAKIKAEELKKAEEE 1631

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564349812  271 RENLEKV-HAEEREMWKTEHARDQERvaEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDE 340
Cdd:PTZ00121 1632 KKKVEQLkKKEAEEKKKAEELKKAEE--ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
PTZ00121 PTZ00121
MAEBL; Provisional
 106-358 2.80e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 2.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  106 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEK-DFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSA 184
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  185 IEKQAH----------RCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKL 254
Cdd:PTZ00121 1436 AKKKAEeakkadeakkKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  255 EK--EAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAI--AEEQRRSEKAM 330
Cdd:PTZ00121 1516 KKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkAEEAKKAEEAR 1593

                         250       260
                  ....*....|....*....|....*...
gi 564349812  331 EEAVKRTRDELVEYVREQRRLDQVTRQR 358
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
PTZ00121 PTZ00121
MAEBL; Provisional
 117-336 3.39e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 3.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  117 KASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELL 196
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  197 HAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLEsavKLEKEAMKdvitKAVEEERENLEK 276
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED---KKKAEEAK----KAEEDEKKAAEA 1693

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564349812  277 VHAEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKR 336
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEaeekKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 103-338 1.28e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.60  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQsSVKQQLDAIEKQYV 182
Cdd:COG4942   30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIA-ELRAELEAQKEELA 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 183 SAIEKQAhrceelLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLgkclqEEMQKNKETLESAVKL--EKEAMK 260
Cdd:COG4942  108 ELLRALY------RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA-----EELRADLAELAALRAEleAERAEL 176

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564349812 261 DVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMsQEAVKAAIAEEQRRSEKAMEEAVKRTR 338
Cdd:COG4942  177 EALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAELQQEAEEL-EALIARLEAEAAAAAERTPAAGFAALK 252
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 107-335 4.22e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 4.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   107 QKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQALLQSS---VKQQLDAIEKQY 181
Cdd:TIGR02168  267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKldeLAEELAELEEKL 346

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   182 ------VSAIEKQAHRCEELLHAQHQRLLEvLDTEKELLKEKIQEALTQQSQEQK-----ETLGKCLQEEMQKNKETLES 250
Cdd:TIGR02168  347 eelkeeLESLEAELEELEAELEELESRLEE-LEEQLETLRSKVAQLELQIASLNNeierlEARLERLEDRRERLQQEIEE 425

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   251 AVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAM 330
Cdd:TIGR02168  426 LLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504


                   ....*
gi 564349812   331 EEAVK 335
Cdd:TIGR02168  505 SEGVK 509
PRK12704 PRK12704
phosphodiesterase; Provisional
 105-301 4.69e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 4.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 105 LRQKISslETKLKASEEEKQRIKKDVESLMEKHSvlekdflKEKEQDAvsfQARYRELQALLQSSVKQQLDAIEKQyvsa 184
Cdd:PRK12704  24 VRKKIA--EAKIKEAEEEAKRILEEAKKEAEAIK-------KEALLEA---KEEIHKLRNEFEKELRERRNELQKL---- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 185 iEKQAHRCEELLhaqhQRLLEVLDTEKELL--KEKIQEALTQQSQEQKETLGKCLQEEMQKnketLESAVKLEKEAMKDV 262
Cdd:PRK12704  88 -EKRLLQKEENL----DRKLELLEKREEELekKEKELEQKQQELEKKEEELEELIEEQLQE----LERISGLTAEEAKEI 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 564349812 263 ITKAVEEE--RENLEKVHAEEREMWKTEHARDQERVAEAIQ 301
Cdd:PRK12704 159 LLEKVEEEarHEAAVLIKEIEEEAKEEADKKAKEILAQAIQ 199
PTZ00121 PTZ00121
MAEBL; Provisional
 104-353 6.14e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 6.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQdAVSFQARYRELQALLQSSVKQQLDAIEKQYVS 183
Cdd:PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK-ADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  184 AIEKQAHRCEELLH-AQHQRLLEVLDTEKEllKEKIQEALTQQSQEQKEtlGKCLQEEMQKNKETLESAVKLEKEAMKDV 262
Cdd:PTZ00121 1412 KAAAAKKKADEAKKkAEEKKKADEAKKKAE--EAKKADEAKKKAEEAKK--AEEAKKKAEEAKKADEAKKKAEEAKKADE 1487

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  263 ITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKaaiAEEQRRSEKaMEEAVKRTRDELV 342
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK---AEEKKKADE-LKKAEELKKAEEK 1563

                         250
                  ....*....|.
gi 564349812  343 EYVREQRRLDQ 353
Cdd:PTZ00121 1564 KKAEEAKKAEE 1574
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 104-351 7.54e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 7.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQ--ARYRELQALLQSSVKQQLDAIE--K 179
Cdd:TIGR02168  723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEelAEAEAEIEELEAQIEQLKEELKalR 802

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   180 QYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEaLTQQSQEQKETLGKC--LQEEMQKNKETLESAVKLEKE 257
Cdd:TIGR02168  803 EALDELRAELTLLNEEAANLRERL-ESLERRIAATERRLED-LEEQIEELSEDIESLaaEIEELEELIEELESELEALLN 880

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   258 AmKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVA--EAIQAAVQEQQRMSQEA--VKAAIAEEQRRSEKAMEEA 333
Cdd:TIGR02168  881 E-RASLEEALALLRSELEELSEELRELESKRSELRRELEElrEKLAQLELRLEGLEVRIdnLQERLSEEYSLTLEEAEAL 959

                          250
                   ....*....|....*...
gi 564349812   334 VKRTRDELVEYVREQRRL 351
Cdd:TIGR02168  960 ENKIEDDEEEARRRLKRL 977
PTZ00121 PTZ00121
MAEBL; Provisional
 187-381 1.00e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  187 KQAHRCEELLHAQHQRLLEVLDTEKELLK----EKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAmkdv 262
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEEVRKAEELRKaedaRKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA---- 1242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  263 itKAVEEERENLEKVHAEEREMW---------KTEHARDQERVAEAIQAAVQEQQRMSQEAVKA----AIAEEQRRSEKA 329
Cdd:PTZ00121 1243 --KKAEEERNNEEIRKFEEARMAhfarrqaaiKAEEARKADELKKAEEKKKADEAKKAEEKKKAdeakKKAEEAKKADEA 1320

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 564349812  330 MEEA--VKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQLSALIATE 381
Cdd:PTZ00121 1321 KKKAeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 104-286 1.03e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKhsvlekdfLKEKEQDAVSFQARYRELQALLQS------SVKQQLDAI 177
Cdd:TIGR02168  327 ELESKLDELAEELAELEEKLEELKEELESLEAE--------LEELEAELEELESRLEELEEQLETlrskvaQLELQIASL 398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   178 EKQyVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKclQEEMQKNKETLESAVKLEKE 257
Cdd:TIGR02168  399 NNE-IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE--LERLEEALEELREELEEAEQ 475

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 564349812   258 AMKDVITK---------AVEEERENLEKVHAEEREMWK 286
Cdd:TIGR02168  476 ALDAAERElaqlqarldSLERLQENLEGFSEGVKALLK 513
mukB PRK04863
chromosome partition protein MukB;
59-358 1.46e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 40.71  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   59 VQLQQSAHTHLNIPLfplgltdeSNHGALALEDEPEgpgvhVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHS 138
Cdd:PRK04863  809 VQKLQRLHQAFSRFI--------GSHLAVAFEADPE-----AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  139 VLEKDFLKEKEQDAVSFQARYRELQAllqssvkqQLDAIE--KQYVsaiekqahrceellhAQHQRLLEVLDTEKELLke 216
Cdd:PRK04863  876 ALNRLLPRLNLLADETLADRVEEIRE--------QLDEAEeaKRFV---------------QQHGNALAQLEPIVSVL-- 930

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  217 kiqealtQQSQEQKETlgkcLQEEMQKNKETLEsAVKLEKEAMKDVITKA-----------VEEERENLEK-----VHAE 280
Cdd:PRK04863  931 -------QSDPEQFEQ----LKQDYQQAQQTQR-DAKQQAFALTEVVQRRahfsyedaaemLAKNSDLNEKlrqrlEQAE 998

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  281 -EREMWKTEHARDQERVAEAIQ--AAVQEQQRMSQEAVKAAIAEEQR---RSEKAMEEAVKRTRDELVEYVREQR-RLDQ 353
Cdd:PRK04863  999 qERTRAREQLRQAQAQLAQYNQvlASLKSSYDAKRQMLQELKQELQDlgvPADSGAEERARARRDELHARLSANRsRRNQ 1078


                  ....*
gi 564349812  354 VTRQR 358
Cdd:PRK04863 1079 LEKQL 1083
PTZ00121 PTZ00121
MAEBL; Provisional
 117-339 1.55e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.89  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  117 KASEEEKQRIKKDVESL--MEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEK--QYVSAIEKQAHRC 192
Cdd:PTZ00121 1570 KKAEEDKNMALRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKveQLKKKEAEEKKKA 1649

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  193 EELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEER- 271
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENk 1729

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564349812  272 ---ENLEKvhAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVK---AAIAEE-QRRSEKAMEEAVKRTRD 339
Cdd:PTZ00121 1730 ikaEEAKK--EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKekeAVIEEElDEEDEKRRMEVDKKIKD 1802
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 166-333 1.56e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.17  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 166 LQSSVKQQLDAiEKQYVSAIEKQAHRCEELLHAQHQRLLEVldtEKELLKEkiQEALTQQSQEQKETLGKCLQEEMQKNK 245
Cdd:PRK09510  67 QQQQQKSAKRA-EEQRKKKEQQQAEELQQKQAAEQERLKQL---EKERLAA--QEQKKQAEEAAKQAALKQKQAEEAAAK 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 246 ETLESAVKLEKEAMK-DVITKAVEEERENLE----KVHAEEREMWKTEHARDQERVAEAIQAAVQE-QQRMSQEAVKAAI 319
Cdd:PRK09510 141 AAAAAKAKAEAEAKRaAAAAKKAAAEAKKKAeaeaAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEaKKKAAAEAKKKAA 220

                        170
                 ....*....|....
gi 564349812 320 AEEQRRSEKAMEEA 333
Cdd:PRK09510 221 AEAKAAAAKAAAEA 234
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
106-306 2.60e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 2.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  106 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEK--------DFLKEKEQDAVSFQARYRELQallqssvkQQLDAI 177
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlAEYSWDEIDVASAEREIAELE--------AELERL 680

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  178 EK--QYVSAIEKQAHRCEELLhAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKetlgkclQEEMQKNKETLESAVKLE 255
Cdd:COG4913   681 DAssDDLAALEEQLEELEAEL-EELEEELDELKGEIGRLEKELEQAEEELDELQD-------RLEAAEDLARLELRALLE 752

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 564349812  256 KEAMKDVITKAVEEERENLEkvhaEEREMWKTEHARDQERVAEAIQAAVQE 306
Cdd:COG4913   753 ERFAAALGDAVERELRENLE----ERIDALRARLNRAEEELERAMRAFNRE 799
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 98-321 4.52e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 39.28  E-value: 4.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812    98 VHVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSSVkQQLDAI 177
Cdd:TIGR02169  299 LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE-IEEERKRRDKLTEEYAELKEELEDLR-AELEEV 376

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812   178 E----------KQYVSAIEKQAHRCEELLHAQH--QRLLEVLDTEKELLKEKIQEALTQQSQEQKETlgKCLQEEMQKNK 245
Cdd:TIGR02169  377 DkefaetrdelKDYREKLEKLKREINELKRELDrlQEELQRLSEELADLNAAIAGIEAKINELEEEK--EDKALEIKKQE 454

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564349812   246 ETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAE 321
Cdd:TIGR02169  455 WKLEQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQ 529
PTZ00121 PTZ00121
MAEBL; Provisional
 107-357 5.21e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.97  E-value: 5.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  107 QKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSAIE 186
Cdd:PTZ00121 1197 EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  187 KQahRCEELLHAQHQRLLEVLDTEKEL-----LKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLE---SAVKLEKEA 258
Cdd:PTZ00121 1277 AR--KADELKKAEEKKKADEAKKAEEKkkadeAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaEAAKAEAEA 1354

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  259 MKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAI-----------AEEQRRSE 327
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAakkkadeakkkAEEKKKAD 1434

                         250       260       270
                  ....*....|....*....|....*....|.
gi 564349812  328 KAMEEAV-KRTRDELVEYVREQRRLDQVTRQ 357
Cdd:PTZ00121 1435 EAKKKAEeAKKADEAKKKAEEAKKAEEAKKK 1465
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 98-210 7.18e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 38.52  E-value: 7.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  98 VHVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQsSVKQQLDAI 177
Cdd:COG0542  402 VRMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIE-EIQELKEEL 480

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 564349812 178 EKQY--VSAIEKQAHRCEELLHAQHQRLLEVLDTE 210
Cdd:COG0542  481 EQRYgkIPELEKELAELEEELAELAPLLREEVTEE 515
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 103-323 8.88e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 37.89  E-value: 8.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALL---QSSVKQQLDAIEK 179
Cdd:COG3883   19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIeerREELGERARALYR 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 180 Q-----YVSAIEKQA------HRCEEL--LHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKetlgkcLQEEMQKNKE 246
Cdd:COG3883   98 SggsvsYLDVLLGSEsfsdflDRLSALskIADADADLLEELKADKAELEAKKAELEAKLAELEA------LKAELEAAKA 171

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564349812 247 TLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQ 323
Cdd:COG3883  172 ELEAQQA-EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAA 247
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
117-343 9.43e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 38.36  E-value: 9.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  117 KASEEEKQRIKKDVESLMEKHSVLEK-----DFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYvSAIEKQAHR 191
Cdd:COG4913   221 PDTFEAADALVEHFDDLERAHEALEDareqiELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRL-ELLEAELEE 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  192 CEELLhAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKcLQEEMQKNKETLESAVKLEKEAMKDVIT-----KA 266
Cdd:COG4913   300 LRAEL-ARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ-LEREIERLERELEERERRRARLEALLAAlglplPA 377

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564349812  267 VEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRmsQEAVKAAIAE-EQRRSekAMEEAVKRTRDELVE 343
Cdd:COG4913   378 SAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE--LRELEAEIASlERRKS--NIPARLLALRDALAE 451
PTZ00121 PTZ00121
MAEBL; Provisional
 106-350 9.61e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.20  E-value: 9.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  106 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQdavsfQARYRELQALLQSSVKQQLDAIEKQyvsai 185
Cdd:PTZ00121 1268 RQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE-----EAKKADEAKKKAEEAKKKADAAKKK----- 1337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  186 EKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEALTQQSQEQKETLGKcLQEEMQKNKETLESAVKLEKEAmkDVITK 265
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAAEE--KAEAAEKKKEEAKKKADAAKK-KAEEKKKADEAKKKAEEDKKKA--DELKK 1412

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812  266 AVEEER--ENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEavKRTRDELVE 343
Cdd:PTZ00121 1413 AAAAKKkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE--AKKADEAKK 1490


                  ....*..
gi 564349812  344 YVREQRR 350
Cdd:PTZ00121 1491 KAEEAKK 1497
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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