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Conserved domains on  [gi|56387569|gb|AAV86173|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Pyrilia pulchra]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 2-345 3.12e-141

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 403.43  E-value: 3.12e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    2 PITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTG 81
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   82 QWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSI 161
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  162 ALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNT 241
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  242 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTN 321
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                        330       340
                 ....*....|....*....|....
gi 56387569  322 PLIPTLTSLSILLLPLSPMILTTI 345
Cdd:MTH00112 323 TLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 2-345 3.12e-141

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 403.43  E-value: 3.12e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    2 PITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTG 81
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   82 QWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSI 161
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  162 ALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNT 241
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  242 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTN 321
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                        330       340
                 ....*....|....*....|....
gi 56387569  322 PLIPTLTSLSILLLPLSPMILTTI 345
Cdd:MTH00112 323 TLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-297 1.87e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.80  E-value: 1.87e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   9 TLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLF--------SSTIN--- 76
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  77 -AQHTGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLST---------LMKLppTTLLLITSH 146
Cdd:COG1007 188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaaLLRL--LVEAFPGLA 265

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569 147 SLSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIFLTM---- 218
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIllls 345

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569 219 ---------------NTTN---ALKLSTLMTSWTKTPmlnttlmltllslsglpPLTGFLPKWLIMQELIKQEMTTTTTI 280
Cdd:COG1007 346 rkggeaeeiedlaglARRSpllALAMTIFLLSLAGIP-----------------PTAGFFGKFYVFSAAVEAGLYWLAVI 408

                       330
                ....*....|....*..
gi 56387569 281 ISMLSLLGLFFYLRLAY 297
Cdd:COG1007 409 AVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 22-267 4.67e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.52  E-value: 4.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    22 SNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPACT----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    96 ------LLTIAIAIKLGLTPFHFWFPEVLQGSPLT-TAMLLSTLMKLPP-----TTLLLITSHSLSHILLTTMSIMSIAL 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   164 GGWMGLNQTQTRKIMAFSSISHLGWMMITI----TYNPKLTLLAFFIYTLMTTSIFL--------TMNTTNALKLSTLmt 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 56387569   232 sWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQ 267
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-296 4.87e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 84.61  E-value: 4.87e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    10 LSILLGTTITTTSNHWAMAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL 88
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    89 -----TYPPACTLLTI-------AIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLS------- 149
Cdd:TIGR01770 189 llflsNGMLNISLLLLgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILfgfseaw 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   150 HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIFLTM------N 219
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrsyK 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56387569   220 TTNALKLSTLMTSWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLA 296
Cdd:TIGR01770 349 DEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 2-345 3.12e-141

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 403.43  E-value: 3.12e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    2 PITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTG 81
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   82 QWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSI 161
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  162 ALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNT 241
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  242 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTN 321
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKN 322

                        330       340
                 ....*....|....*....|....
gi 56387569  322 PLIPTLTSLSILLLPLSPMILTTI 345
Cdd:MTH00112 323 TLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 2-325 2.84e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 327.65  E-value: 2.84e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    2 PITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTG 81
Cdd:MTH00070   3 PYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   82 QWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSI 161
Cdd:MTH00070  83 EWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  162 ALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNT 241
Cdd:MTH00070 163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  242 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTN 321
Cdd:MTH00070 243 MMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTN 322


                 ....
gi 56387569  322 PLIP 325
Cdd:MTH00070 323 NLLS 326
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 10-323 2.95e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 322.52  E-value: 2.95e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   10 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLT 89
Cdd:MTH00135  11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   90 YPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHiLLTTMSIMSIALGGWMGL 169
Cdd:MTH00135  91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPT-LLITLGLTSTLVGGWGGL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  170 NQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNTTLMLTLLS 249
Cdd:MTH00135 170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56387569  250 LSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQW--STKNPTNPL 323
Cdd:MTH00135 250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrlPSTQLTLPL 325
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-325 4.34e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 296.37  E-value: 4.34e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    2 PITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTG 81
Cdd:MTH00105   3 PLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   82 QWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSI 161
Cdd:MTH00105  83 QWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSI 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  162 ALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNT 241
Cdd:MTH00105 163 LIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  242 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITL-PPNPSSKMKQWSTKNPT 320
Cdd:MTH00105 243 LILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMKWQFENTKP 322


                 ....*
gi 56387569  321 NPLIP 325
Cdd:MTH00105 323 MTLLP 327
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 2-325 6.93e-81

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 249.89  E-value: 6.93e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    2 PITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTG 81
Cdd:MTH00200   3 PLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   82 QWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSI 161
Cdd:MTH00200  83 QWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  162 ALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNT 241
Cdd:MTH00200 163 LVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSM 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  242 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTN 321
Cdd:MTH00200 243 LLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN 322


                 ....
gi 56387569  322 PLIP 325
Cdd:MTH00200 323 LLVG 326
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 10-325 1.68e-74

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 233.67  E-value: 1.68e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   10 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLT 89
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   90 YPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSIALGGWMGL 169
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  170 NQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNTTLMLTLLS 249
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56387569  250 LSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTNPLIP 325
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 3-324 2.82e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 162.69  E-value: 2.82e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    3 ITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQhtgq 82
Cdd:MTH00160   5 SSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML---- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   83 wdITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLlitSHSLSHILLTTMSIMSIA 162
Cdd:MTH00160  81 --NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  163 LGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNTT 242
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  243 LMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTNP 322
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315


                 ..
gi 56387569  323 LI 324
Cdd:MTH00160 316 NF 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 12-317 1.79e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 141.95  E-value: 1.79e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   12 ILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITqltyp 91
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   92 pacTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLL-LITSHSLSHILLTTMSIMSIALGGWMGLN 170
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  171 QTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTlMTSWTKTPMLNTTLMLTLLSL 250
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLLSL 243

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56387569  251 SGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTK 317
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNS 310
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 11-309 5.41e-38

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 138.37  E-value: 5.41e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   11 SILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTInaqhtgQWDITQLTY 90
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   91 PPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSIALGGWMGLN 170
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  171 QTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNTTLMLTLLSL 250
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56387569  251 SGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYcSTITLPPNPSS 309
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 10-312 4.76e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 127.48  E-value: 4.76e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   10 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTgqwditqLT 89
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   90 YPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLshILLTTMSIMSIALGGWMGL 169
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSF--MGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  170 NQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLMTTSIFLTMNTTNALKLSTLMTSWTKTPMLNTTLMLTLLS 249
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56387569  250 LSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMK 312
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 12-295 1.95e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 96.64  E-value: 1.95e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   12 ILLGTTITTTSNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------STINA 77
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   78 QHTGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLppTTLLLITSHSLSHILLTTMS 157
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  158 IMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNP----KLTLLAFFIYTLMTTSIFLTMNTTNALK--LSTLMT 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56387569  232 SWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRL 295
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-297 1.87e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.80  E-value: 1.87e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   9 TLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLF--------SSTIN--- 76
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  77 -AQHTGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLST---------LMKLppTTLLLITSH 146
Cdd:COG1007 188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaaLLRL--LVEAFPGLA 265

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569 147 SLSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIFLTM---- 218
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIllls 345

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569 219 ---------------NTTN---ALKLSTLMTSWTKTPmlnttlmltllslsglpPLTGFLPKWLIMQELIKQEMTTTTTI 280
Cdd:COG1007 346 rkggeaeeiedlaglARRSpllALAMTIFLLSLAGIP-----------------PTAGFFGKFYVFSAAVEAGLYWLAVI 408

                       330
                ....*....|....*..
gi 56387569 281 ISMLSLLGLFFYLRLAY 297
Cdd:COG1007 409 AVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 22-267 4.67e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.52  E-value: 4.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    22 SNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPACT----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    96 ------LLTIAIAIKLGLTPFHFWFPEVLQGSPLT-TAMLLSTLMKLPP-----TTLLLITSHSLSHILLTTMSIMSIAL 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   164 GGWMGLNQTQTRKIMAFSSISHLGWMMITI----TYNPKLTLLAFFIYTLMTTSIFL--------TMNTTNALKLSTLmt 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 56387569   232 sWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQ 267
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-296 4.87e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 84.61  E-value: 4.87e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    10 LSILLGTTITTTSNHWAMAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL 88
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    89 -----TYPPACTLLTI-------AIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLS------- 149
Cdd:TIGR01770 189 llflsNGMLNISLLLLgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILfgfseaw 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   150 HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIFLTM------N 219
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrsyK 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56387569   220 TTNALKLSTLMTSWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLA 296
Cdd:TIGR01770 349 DEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
13-295 8.28e-17

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 81.02  E-value: 8.28e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   13 LLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL--- 88
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   89 -----TYPP----ACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKL----PPTTLLLITSHSLSH---IL 152
Cdd:PRK05777 193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEdwqQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  153 LTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKL----TLLAFFIYTLMTTSIF--LTMNTTNALKL 226
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFgvISLLRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56387569  227 STLmTSWT----KTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRL 295
Cdd:PRK05777 353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-266 4.39e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 78.91  E-value: 4.39e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    1 TPITKLISTLSILLgttiTTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLFSSTINAQH 79
Cdd:MTH00199  99 SPILILIVALGSLL----LVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGL 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   80 TGQWDITQLTYPPAC----TLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSHILLTt 155
Cdd:MTH00199 175 TGETSIQGINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC- 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  156 mSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNP----KLTLLAFFIYTLMTT---SIFLTMNTTNALKLST 228
Cdd:MTH00199 254 -AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEV 332

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 56387569  229 LMTSwTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIM 266
Cdd:MTH00199 333 SGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 29-295 3.16e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 73.26  E-value: 3.16e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  29 WAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL-----TYPP-----ACTLLT 98
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaELDPglllaAFALLL 212

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  99 IAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLM-KLPP-------TTLLLITSHSLSHILLTTMSIMSIALGGWMGLN 170
Cdd:COG0651 213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvlTLLFGADPALFLGTLLLVLGLLTMLVGALGALA 292

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569 171 QTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIY----TLMTTSIFLT----MNTTNALKLSTLMTSWTKTPMLNTT 242
Cdd:COG0651 293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 56387569 243 LMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRL 295
Cdd:COG0651 373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 2-209 6.01e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.58  E-value: 6.01e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    2 PITKLISTLSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQAAASALVLFS 72
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   73 STINAQHTGQWDI--TQLTYPPACT------------LLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLppT 138
Cdd:MTH00198 267 CALYFGFTGNEGMlgTILSATLETTnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 56387569  139 TLLLITSHSLSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTL 209
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
49-219 8.38e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 68.92  E-value: 8.38e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   49 PRAIEAATKYFLVQAAASALVLFSST----INAQHTGQWDITQLTYPPACTLLTIA-------IAIKLGLTPFHFWFPEV 117
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALALITSPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  118 LQGSPLTTAMLLSTLMKLPPTTL---LLITSHSLS----HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMM 190
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180
                 ....*....|....*....|....*....
gi 56387569  191 ITITYNPKLTLLAFFIYTLmttsIFLTMN 219
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLL----AYLFMN 341
ndhB CHL00049
NADH dehydrogenase subunit 2
 50-219 1.09e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 68.49  E-value: 1.09e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   50 RAIEAATKYFLVQAAASALVL--FSST--INAQHTGQWDI------TQLTYPPAC----TLLTIAIAIKLGLTPFHFWFP 115
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  116 EVLQGSPLTTAMLLSTLMKLP----PTTLLLITSHSLS---HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGW 188
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190
                 ....*....|....*....|....*....|..
gi 56387569  189 MMI-TITYNPKLTLLAFFIYTLmttsIFLTMN 219
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYML----FYIFMN 346
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 37-191 2.60e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.41  E-value: 2.60e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  37 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQW-----DITQLTYPPA-----CTLLTIAIAI 103
Cdd:COG1008 142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569 104 KLGLTPFHFWFPEVLQGSPLTTAMLLS-TLMK----------LPpttLLLITSHSLSHILLTtMSIMSIALGGWMGLNQT 172
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAPTAGSVLLAgVLLKmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                       170
                ....*....|....*....
gi 56387569 173 QTRKIMAFSSISHLGWMMI 191
Cdd:COG1008 298 DLKRLIAYSSVSHMGFVLL 316
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 37-193 6.51e-10

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 60.22  E-value: 6.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   37 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASALVLFS----STINAQHTGQWDITQLTYPP----ACTLL----TIAI 101
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPlppgVQYWLflafFIAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  102 AIKLGLTPFHFWFPEVLQGSPLTTAMLLS-TLMKLPPTTLLLI-------TSHSLSHILLTtMSIMSIALGGWMGLNQTQ 173
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAgILLKMGAYGLLRFslplfpdASHEFAPIIIT-LGVIAIIYGALVALAQTD 300

                        170       180
                 ....*....|....*....|
gi 56387569  174 TRKIMAFSSISHLGWMMITI 193
Cdd:PRK05846 301 IKKLIAYSSISHMGFVTLGI 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 49-193 9.84e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.49  E-value: 9.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569    49 PRAIEAATKYFLVQAAASALVLFSSTINA-QHTGQWDIT---QLTYPPACTLLT-----IAIAIKLGLTPFHFWFPEVLQ 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTFDLLellNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   120 GSPLTTAMLLS-TLMKLPPTTLLLI-------TSHSLSHILLtTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMI 191
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFnlplfpdASLYFAPVLA-ALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 56387569   192 TI 193
Cdd:TIGR01972 311 GI 312
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-297 5.85e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 5.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   32 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLT--YPPACTLLT------IAIAI 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  104 KLGLTPFHFWFPEVLQG-SPLTTAMLLSTLMKLPPTTLLLITSH---------SLSHILLTTMSIMSIALGGWMGLNQTQ 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfaLGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  174 TRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYT----LMTTSIFLT----MNTTNALKLSTLMTSWTKTPMLNTTLML 245
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 56387569  246 TLLSLSGLPPLTGFLPKWLIMQELIKQEMTTTTTIISMLSLLGLFFYLRLAY 297
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 12-209 1.26e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.83  E-value: 1.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   12 ILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAA------SALVLFSSTINAQHTGQWDI 85
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   86 TQLT-----YPPACTLLT-----IAIAIKLGLTPFHFWFPEVLQGSP-LTTAMLLSTLMKLPPTTLLLITS-------HS 147
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56387569  148 LSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTL 209
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 54-193 1.46e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 52.73  E-value: 1.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   54 AATKYFLVQAAASALVLFSSTINAQHTGQ--WDITQLT---YPPACTLLT-----IAIAIKLGLTPFHFWFPEVLQGSPL 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56387569  124 TTAMLLS-TLMKLPPTTLLLITSHSLS--HI----LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITI 193
Cdd:PRK12561 218 PVSMILAgVLLKMGGYALIRFNVQMLPdaHVyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 33-274 5.86e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.15  E-value: 5.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   33 EINTLS---IIPMISKshhpRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDI----------TQLTYPPACTLLTI 99
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFALIVFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  100 AIAI-KLGLTPFHFWFPEVLQGSPLT-TAMLLSTLMKLP-----------PTTLLLIT-----SHSLSHILLTTMSIMSI 161
Cdd:PRK08668 204 AFGVaKAGIFPLHVWAPDAYSEAPQSfSAVLSGQLSKLGaygfllvlyvlPGTKLFSEfgtyrGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  162 ALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYnpkLTLLAF-------FIYTLMTTSIFLTMNT----TNALKLSTLM 230
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGYILVGLGL---GTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMG 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 56387569  231 TSWTKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEM 274
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 22-210 1.13e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.93  E-value: 1.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   22 SNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSS--------------------TINAQHTG 81
Cdd:PRK06458 127 SNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvmgdgemailwTELLKHAS 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   82 QWDITQLTYppACTLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLmkLPPTTLL------LITSHSLSHI---- 151
Cdd:PRK06458 207 LLDPTLMKL--AFVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGV--LLNVALYavlryyILIDAAIGSDfpgr 282

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56387569  152 LLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTLM 210
Cdd:PRK06458 283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 47-195 1.84e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 46.36  E-value: 1.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   47 HHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPAC--------------TLLTIAIAIKLGLTPFHF 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitlILIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  113 WFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLS-----HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLG 187
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSgteawFILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 56387569  188 WMMITITY 195
Cdd:PRK12649 316 YLMTMYGY 323
PRK12650 PRK12650
DUF4040 family protein;
28-209 4.68e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.42  E-value: 4.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   28 AWaglEINTLSIIPMISKSHhPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPA---CTLLTIAIAIK 104
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  105 LGLT--------PFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLS-----HILLTTMSIMSIALGGWMGLNQ 171
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHdvavwNWLLIIVGMITALMGAVFAVQK 293

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 56387569  172 TQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIYTL 209
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTL 331
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 54-203 1.32e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 43.76  E-value: 1.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   54 AATKYFLVQAAASALVLFSSTINAQHTGQWDITQL-TYPPACTLLTIAIAI-------KLGLTPFHFWFPEVLQGSPLTT 125
Cdd:PRK12644 158 AALQALLVTTAGGLAMLVGIIILGQAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVS 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  126 AMLLSTLM---------KLPPTtllliTSHSLS-HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITITY 195
Cdd:PRK12644 238 AYLHAAAMvkagiylvaRLAPG-----FADVPVwRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGI 312


                 ....*...
gi 56387569  196 NPKLTLLA 203
Cdd:PRK12644 313 GTRDAALA 320
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 47-191 2.18e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.18e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  47 HHPRAIEAATKYFLVQAA------ASALVLFS-------STINAQhtGQWDITQLTYPPACTLLTIAIAIKLGLTPFHFW 113
Cdd:COG1009 156 EKPSARRAARKAFLVTRVgdlgllLGILLLGAiagtlnfSELLAA--APTILSSPLLTLILLLLLLGAFGKSAQFPLHFW 233

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569 114 FPEVLQG----SPL----T--TA-----MLLSTLMKLPPTTLLLITShslshILLTTMsimsiALGGWMGLNQTQTRKIM 178
Cdd:COG1009 234 LPDAMEGptpvSALlhaaTmvKAgvyllARLSPLFALSPVWLTVVAI-----IGAITA-----LFAALIALAQTDIKRVL 303

                       170
                ....*....|...
gi 56387569 179 AFSSISHLGWMMI 191
Cdd:COG1009 304 AYSTVSQLGYMFL 316
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
97-203 2.99e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.38  E-value: 2.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   97 LTIAIAIKLGLTPFHFWFPEV-LQGSPLTTAMLLSTLMKLPPTTLL------LITSHSLSHILLTTMSIMSIALGGWMGL 169
Cdd:PRK06473 211 ILVGFGIKIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAI 290

                         90       100       110
                 ....*....|....*....|....*....|....
gi 56387569  170 NQTQTRKIMAFSSISHLGWMMITITYNPKLTLLA 203
Cdd:PRK06473 291 AQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-265 3.12e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 42.39  E-value: 3.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   32 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASALVLFSSTInaqHTGQWDITQLTYPP-------------ACTLL 97
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTLNMAYLAvkmsenptvvakiALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   98 TIAIAIKLGLTPFHFWFPEVLQGSP--LTTAMLLSTLMKLPPTTLLLITSHSLSHILLTTMSIMSI------ALGGWMGL 169
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  170 NQTQTRKIMAFSSISHLGWMM------ITITYNPKLTLLAF----------FIYTLMTTSIFLT-------MNTTNALKL 226
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLlglgvgLAALGDPAMASYGEialaggiyhiVNHALYKALLFLTagaviyeTGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 56387569  227 STLMTswtKTPMLNTTLMLTLLSLSGLPPLTGFLPKWLI 265
Cdd:PRK08376 387 GGLAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
ndhD CHL00011
NADH dehydrogenase subunit 4
 99-193 6.89e-04

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 41.47  E-value: 6.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   99 IAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLS-TLMKLPPTTLLLITSHSLSH---------ILLTTMSIMSIALggwMG 168
Cdd:CHL00011 219 IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAgILLKMGAYGLIRINMELLPHahsifspwlVIVGAIQIIYAAS---TS 295

                         90       100
                 ....*....|....*....|....*
gi 56387569  169 LNQTQTRKIMAFSSISHLGWMMITI 193
Cdd:CHL00011 296 LGQRNLKKRIAYSSVSHMGFIIIGI 320
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 54-193 8.79e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.85  E-value: 8.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   54 AATKYFLVQA--------AASALVLFSSTINAQHTgqwDITQLTYPPACTLLT-----IAIAIKLGLTPFHFWFPEVLQG 120
Cdd:PRK02546 166 AATKFILYTAgsslfillAALAMAFYGDTPTFDMT---ALAAKDFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGE 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  121 SPLTTAMLLS-TLMKLPPTTLL------LITSHSLSHILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITI 193
Cdd:PRK02546 243 ATAPVHMLLAgILLKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 99-193 1.12e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.68  E-value: 1.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   99 IAIAIKLGLTPFHFWFPEVLQGSPLTTAMLLS-TLMKLPPTTLLLIT-------SHSLSHILLtTMSIMSIALGGWMGLN 170
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSwpilplgAQNLAPAVI-AMGIVGIVYGSFATCR 316

                         90       100
                 ....*....|....*....|...
gi 56387569  171 QTQTRKIMAFSSISHLGWMMITI 193
Cdd:MTH00226 317 QIDVKRLVAYSSVAHMGLVSITL 339
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 54-193 1.27e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.48  E-value: 1.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   54 AATKYFLVQAAASALVLFSSTINAQHTGQWDITQLTYPPAC-----TLLTIAIAIKLGLTPFHFWFPEVLQGSPLTTAML 128
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 56387569  129 LSTLM-KLPPTTLLLITSHSLS-----HILLTTMSIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMMITI 193
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSpelwwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGI 313
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
95-202 2.94e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.31  E-value: 2.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   95 TLLTIAIAIKLGLTPFHFWFPEV-LQGSPLTTAMLLSTLMKLPPTTL------LLITSHSLSHILLTTMSIMSIALGGWM 167
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPDAyTEASPAVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALS 288

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 56387569  168 GLNQTQTRKIMAFSSISHLGWMMITITYNPKLTLL 202
Cdd:PRK07363 289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-271 5.96e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.18  E-value: 5.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569   32 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASALVLFSSTINAQHTGQWDITQL-----------TYPPACTLLTIA 100
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  101 IAIKLGLTPFHFWFPEVLQGSPLTTAMLLSTLMKLPPTTLLLITSHSLSH-----------ILLTTMSIMSIALGGWMGL 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVFKanfvfttlpfnNVFMILAALAIVFGSVLAI 298

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56387569  170 NQTQTRKIMAFSSISHLGWMMITITYNPKLTLLAFFIY----TLMTTSIFLTMNTT----NALKLSTLMTSWTKTPMLNT 241
Cdd:PRK12662 299 LSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfGTTKLEDCLNLWKSMPKITL 378

                        250       260       270
                 ....*....|....*....|....*....|
gi 56387569  242 TLMLTLLSLSGLPPLTGFLPKWLIMQELIK 271
Cdd:PRK12662 379 AFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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