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Conserved domains on  [gi|56184|emb|CAA40801|]
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glutamate decarboxylase [Rattus norvegicus]

Protein Classification

PLP-dependent decarboxylase( domain architecture ID 10447228)

PLP-dependent decarboxylase such as DOPA decarboxylase, glutamate decarboxylase, and histidine decarboxylase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Pyridoxal_deC pfam00282
Pyridoxal-dependent decarboxylase conserved domain;
143-517 0e+00

Pyridoxal-dependent decarboxylase conserved domain;


:

Pssm-ID: 395219  Cd Length: 373  Bit Score: 525.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      143 PHQLlegMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVF 221
Cdd:pfam00282   1 PGYL---KPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHsPHFHAYMPTGNSYPSLLGDMLTDAINCNGFTWESSPAC 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      222 VLMEQITLKKMREIIGWSN----KDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-----KLVLFTSEHSHYS 292
Cdd:pfam00282  78 TELENVVMNWLGEMLGLPAeflgQEGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPADSsgilaKLVAYTSDQAHSS 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      293 IKKAGAALGFGtdnVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD 372
Cdd:pfam00282 158 IEKAALYGGVK---LREIPSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGDICAKHNLWLHVD 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      373 AAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKqydvSYDTGDKAI 452
Cdd:pfam00282 235 AAYGGSAFICPEFRHWLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLGHTDS----AYDTGHKQI 310
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56184      453 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFngEPEHTNVCFWYI 517
Cdd:pfam00282 311 PLSRRFRILKLWFVIRSLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICA--EVGLGLVCFRLK 373
 
Name Accession Description Interval E-value
Pyridoxal_deC pfam00282
Pyridoxal-dependent decarboxylase conserved domain;
143-517 0e+00

Pyridoxal-dependent decarboxylase conserved domain;


Pssm-ID: 395219  Cd Length: 373  Bit Score: 525.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      143 PHQLlegMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVF 221
Cdd:pfam00282   1 PGYL---KPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHsPHFHAYMPTGNSYPSLLGDMLTDAINCNGFTWESSPAC 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      222 VLMEQITLKKMREIIGWSN----KDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-----KLVLFTSEHSHYS 292
Cdd:pfam00282  78 TELENVVMNWLGEMLGLPAeflgQEGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPADSsgilaKLVAYTSDQAHSS 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      293 IKKAGAALGFGtdnVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD 372
Cdd:pfam00282 158 IEKAALYGGVK---LREIPSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGDICAKHNLWLHVD 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      373 AAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKqydvSYDTGDKAI 452
Cdd:pfam00282 235 AAYGGSAFICPEFRHWLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLGHTDS----AYDTGHKQI 310
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56184      453 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFngEPEHTNVCFWYI 517
Cdd:pfam00282 311 PLSRRFRILKLWFVIRSLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICA--EVGLGLVCFRLK 373
DOPA_deC_like cd06450
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
186-589 6.15e-159

DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.


Pssm-ID: 99743 [Multi-domain]  Cd Length: 345  Bit Score: 458.21  E-value: 6.15e-159
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    186 FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIGWSNKDGDGIFSPGGAISNMYSIMAARYK 265
Cdd:cd06450   1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDR 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    266 YFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGfgtDNVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAG 345
Cdd:cd06450  81 ARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD---VKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAG 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    346 TTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKekgilqg 425
Cdd:cd06450 158 TTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------- 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    426 cnqmcagylfqpdkqydvsydtgdkaiqcgrhvdIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEmvFNG 505
Cdd:cd06450 231 ----------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFE--LLG 274
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    506 EPEHTNVCFWYIPQSlrgvpdsperreKLHRVAPKIKALMMESGTTMVGYQPQGDKaNFFRMVISNPAATQSDIDFLIEE 585
Cdd:cd06450 275 EPNLSLVCFRLKPSV------------KLDELNYDLSDRLNERGGWHVPATTLGGP-NVLRFVVTNPLTTRDDADALLED 341

                ....
gi 56184    586 IERL 589
Cdd:cd06450 342 IERA 345
GadA COG0076
Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport ...
151-592 3.46e-131

Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport and metabolism]; Glutamate or tyrosine decarboxylase or a related PLP-dependent protein is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 439846 [Multi-domain]  Cd Length: 460  Bit Score: 391.89  E-value: 3.46e-131
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    151 EGFNLELSDHPESLEQILVDCRDT-LKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITL 229
Cdd:COG0076  34 AALDEPLPEEGLPPEEALAELEDLvLPGSVDWNHPRFLAFVTGGTTPAALAADLLASALNQNMGDWDTSPAATELEREVV 113
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    230 KKMREIIGWSnKDGDGIFSPGGAISNMYSIMAARYKYFPE-VKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 308
Cdd:COG0076 114 RWLADLLGLP-EGAGGVFTSGGTEANLLALLAARDRALARrVRAEGLPGAPRPRIVVSEEAHSSVDKAARLLGLGRDALR 192
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    309 LIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHK 388
Cdd:COG0076 193 KVPVDEDGRMDPDALEAAIDEDRAAGLNPIAVVATAGTTNTGAIDPLAEIADIAREHGLWLHVDAAYGGFALPSPELRHL 272
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    389 LSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDkqyDVSYDTGDKAIQCGRHVDIFKFWLMWK 468
Cdd:COG0076 273 LDGIERADSITVDPHKWLYVPYGCGAVLVRDPELLREAFSFHASYLGPAD---DGVPNLGDYTLELSRRFRALKLWATLR 349
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    469 AKGTVGFENQINKCLELAEYLYAKIKNREEFEMVfnGEPEHTNVCFWYIPqslrgvPDSPERREKLHRVApkikALMMES 548
Cdd:COG0076 350 ALGREGYRELIERCIDLARYLAEGIAALPGFELL--APPELNIVCFRYKP------AGLDEEDALNYALR----DRLRAR 417
                       410       420       430       440
                ....*....|....*....|....*....|....*....|....
gi 56184    549 GTTMVGYQPQGDKANfFRMVISNPAATQSDIDFLIEEIERLGQD 592
Cdd:COG0076 418 GRAFLSPTKLDGRVV-LRLVVLNPRTTEDDVDALLDDLREAAAE 460
PLN02590 PLN02590
probable tyrosine decarboxylase
159-518 2.53e-37

probable tyrosine decarboxylase


Pssm-ID: 178200 [Multi-domain]  Cd Length: 539  Bit Score: 145.62  E-value: 2.53e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     159 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIG 237
Cdd:PLN02590 105 ERPESLKELLDDVSKKIMPGITHWQsPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQ 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     238 W-----SNKDGDGIFSPGGAISNMYSIMAARYKYFPEVktkGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKC 312
Cdd:PLN02590 185 LpdhflSTGNGGGVIQGTGCEAVLVVVLAARDRILKKV---GKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKT 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     313 NERGK--IIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLS 390
Cdd:PLN02590 262 DSSTNygMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFID 341
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     391 GIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK 470
Cdd:PLN02590 342 GIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY 421
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 56184     471 GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNgePEHTNVCFWYIP 518
Cdd:PLN02590 422 GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT--RYFSLVCFRLAP 467
 
Name Accession Description Interval E-value
Pyridoxal_deC pfam00282
Pyridoxal-dependent decarboxylase conserved domain;
143-517 0e+00

Pyridoxal-dependent decarboxylase conserved domain;


Pssm-ID: 395219  Cd Length: 373  Bit Score: 525.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      143 PHQLlegMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVF 221
Cdd:pfam00282   1 PGYL---KPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHsPHFHAYMPTGNSYPSLLGDMLTDAINCNGFTWESSPAC 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      222 VLMEQITLKKMREIIGWSN----KDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-----KLVLFTSEHSHYS 292
Cdd:pfam00282  78 TELENVVMNWLGEMLGLPAeflgQEGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPADSsgilaKLVAYTSDQAHSS 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      293 IKKAGAALGFGtdnVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD 372
Cdd:pfam00282 158 IEKAALYGGVK---LREIPSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGDICAKHNLWLHVD 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      373 AAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKqydvSYDTGDKAI 452
Cdd:pfam00282 235 AAYGGSAFICPEFRHWLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLGHTDS----AYDTGHKQI 310
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56184      453 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFngEPEHTNVCFWYI 517
Cdd:pfam00282 311 PLSRRFRILKLWFVIRSLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICA--EVGLGLVCFRLK 373
DOPA_deC_like cd06450
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
186-589 6.15e-159

DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.


Pssm-ID: 99743 [Multi-domain]  Cd Length: 345  Bit Score: 458.21  E-value: 6.15e-159
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    186 FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIGWSNKDGDGIFSPGGAISNMYSIMAARYK 265
Cdd:cd06450   1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDR 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    266 YFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGfgtDNVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAG 345
Cdd:cd06450  81 ARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD---VKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAG 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    346 TTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKekgilqg 425
Cdd:cd06450 158 TTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------- 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    426 cnqmcagylfqpdkqydvsydtgdkaiqcgrhvdIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEmvFNG 505
Cdd:cd06450 231 ----------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFE--LLG 274
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    506 EPEHTNVCFWYIPQSlrgvpdsperreKLHRVAPKIKALMMESGTTMVGYQPQGDKaNFFRMVISNPAATQSDIDFLIEE 585
Cdd:cd06450 275 EPNLSLVCFRLKPSV------------KLDELNYDLSDRLNERGGWHVPATTLGGP-NVLRFVVTNPLTTRDDADALLED 341

                ....
gi 56184    586 IERL 589
Cdd:cd06450 342 IERA 345
GadA COG0076
Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport ...
151-592 3.46e-131

Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport and metabolism]; Glutamate or tyrosine decarboxylase or a related PLP-dependent protein is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 439846 [Multi-domain]  Cd Length: 460  Bit Score: 391.89  E-value: 3.46e-131
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    151 EGFNLELSDHPESLEQILVDCRDT-LKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITL 229
Cdd:COG0076  34 AALDEPLPEEGLPPEEALAELEDLvLPGSVDWNHPRFLAFVTGGTTPAALAADLLASALNQNMGDWDTSPAATELEREVV 113
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    230 KKMREIIGWSnKDGDGIFSPGGAISNMYSIMAARYKYFPE-VKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 308
Cdd:COG0076 114 RWLADLLGLP-EGAGGVFTSGGTEANLLALLAARDRALARrVRAEGLPGAPRPRIVVSEEAHSSVDKAARLLGLGRDALR 192
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    309 LIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHK 388
Cdd:COG0076 193 KVPVDEDGRMDPDALEAAIDEDRAAGLNPIAVVATAGTTNTGAIDPLAEIADIAREHGLWLHVDAAYGGFALPSPELRHL 272
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    389 LSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDkqyDVSYDTGDKAIQCGRHVDIFKFWLMWK 468
Cdd:COG0076 273 LDGIERADSITVDPHKWLYVPYGCGAVLVRDPELLREAFSFHASYLGPAD---DGVPNLGDYTLELSRRFRALKLWATLR 349
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    469 AKGTVGFENQINKCLELAEYLYAKIKNREEFEMVfnGEPEHTNVCFWYIPqslrgvPDSPERREKLHRVApkikALMMES 548
Cdd:COG0076 350 ALGREGYRELIERCIDLARYLAEGIAALPGFELL--APPELNIVCFRYKP------AGLDEEDALNYALR----DRLRAR 417
                       410       420       430       440
                ....*....|....*....|....*....|....*....|....
gi 56184    549 GTTMVGYQPQGDKANfFRMVISNPAATQSDIDFLIEEIERLGQD 592
Cdd:COG0076 418 GRAFLSPTKLDGRVV-LRLVVLNPRTTEDDVDALLDDLREAAAE 460
PLN02590 PLN02590
probable tyrosine decarboxylase
159-518 2.53e-37

probable tyrosine decarboxylase


Pssm-ID: 178200 [Multi-domain]  Cd Length: 539  Bit Score: 145.62  E-value: 2.53e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     159 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIG 237
Cdd:PLN02590 105 ERPESLKELLDDVSKKIMPGITHWQsPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQ 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     238 W-----SNKDGDGIFSPGGAISNMYSIMAARYKYFPEVktkGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKC 312
Cdd:PLN02590 185 LpdhflSTGNGGGVIQGTGCEAVLVVVLAARDRILKKV---GKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKT 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     313 NERGK--IIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLS 390
Cdd:PLN02590 262 DSSTNygMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFID 341
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     391 GIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK 470
Cdd:PLN02590 342 GIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY 421
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 56184     471 GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNgePEHTNVCFWYIP 518
Cdd:PLN02590 422 GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT--RYFSLVCFRLAP 467
PLN02880 PLN02880
tyrosine decarboxylase
159-518 3.38e-36

tyrosine decarboxylase


Pssm-ID: 215475 [Multi-domain]  Cd Length: 490  Bit Score: 141.58  E-value: 3.38e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     159 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIG 237
Cdd:PLN02880  57 NQPETLDQVLDDVQAKILPGVTHWQsPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLN 136
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     238 -----WSNKDGDGIFSPGGAISNMYSIMAARYKYfpeVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIK- 311
Cdd:PLN02880 137 lpeqfLSTGNGGGVIQGTASEAVLVVLLAARDRV---LRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKt 213
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     312 -CNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLS 390
Cdd:PLN02880 214 dSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYID 293
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     391 GIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK 470
Cdd:PLN02880 294 GVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLY 373
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 56184     471 GTVGFENQINKCLELAEYLYAKIKNREEFEMVfnGEPEHTNVCFWYIP 518
Cdd:PLN02880 374 GVENLQSYIRNHIKLAKEFEQLVAQDSRFEVV--TPRIFSLVCFRLVP 419
PRK02769 PRK02769
histidine decarboxylase; Provisional
245-497 1.36e-23

histidine decarboxylase; Provisional


Pssm-ID: 235068 [Multi-domain]  Cd Length: 380  Bit Score: 102.81  E-value: 1.36e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     245 GIFSPGGAISNMYSIMAARyKYFPEVktkgmaavpklVLFTSEHSHYSIKKAGAALGFgTDNVILIKCNerGKIIPADLE 324
Cdd:PRK02769  87 GYITNGGTEGNLYGCYLAR-ELFPDG-----------TLYYSKDTHYSVSKIARLLRI-KSRVITSLPN--GEIDYDDLI 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     325 AKILDAKQKgfvPLYVNATAGTTVYGAFDPIQEIADICEKYNL---WLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWN 401
Cdd:PRK02769 152 SKIKENKNQ---PPIIFANIGTTMTGAIDNIKEIQEILKKIGIddyYIHADAALSGMILPFVNNPPPFSFADGIDSIAIS 228
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     402 PHKMMGVLLQCSAILVKEKGIlqgcnqmcagylfqpDKQY-DVSY-DTGDKAIQCGR--HVDIfkfwLMWKA---KGTVG 474
Cdd:PRK02769 229 GHKFIGSPMPCGIVLAKKKYV---------------ERISvDVDYiGSRDQTISGSRngHTAL----LLWAAirsLGSKG 289
                        250       260
                 ....*....|....*....|...
gi 56184     475 FENQINKCLELAEYLYAKIKNRE 497
Cdd:PRK02769 290 LRQRVQHCLDMAQYAVDRLQANG 312
PLN03032 PLN03032
serine decarboxylase; Provisional
245-494 5.35e-12

serine decarboxylase; Provisional


Pssm-ID: 166673 [Multi-domain]  Cd Length: 374  Bit Score: 67.54  E-value: 5.35e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     245 GIFSPGGAISNMYSIMAARYKYfpevktkgmaavPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIkcnERGKIIPADLE 324
Cdd:PLN03032  88 GYITTCGTEGNLHGILVGREVF------------PDGILYASRESHYSVFKAARMYRMEAVKVPTL---PSGEIDYDDLE 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     325 AKILDAKQKgfvPLYVNATAGTTVYGAFDPIQEIADICEKYN-----LWLHVDAAWGGGLLMSRKHRHKLSGIERANSVT 399
Cdd:PLN03032 153 RALAKNRDK---PAILNVNIGTTVKGAVDDLDRILRILKELGytedrFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVS 229
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     400 WNPHKMMGVLLQCSAILVKEKGILQgcnqmcagylFQPDKQYDVSYDTGDKAIQCGrHVDIFkFWLMWKAKGTVGFENQI 479
Cdd:PLN03032 230 VSGHKFLGCPMPCGVALTRKKHVKA----------LSQNVEYLNSRDATIMGSRNG-HAPLY-LWYTLRRKGYRGIKRDV 297
                        250
                 ....*....|....*
gi 56184     480 NKCLELAEYLYAKIK 494
Cdd:PLN03032 298 QHCMRNAHYLKDRLT 312
PLN02263 PLN02263
serine decarboxylase
279-495 9.90e-12

serine decarboxylase


Pssm-ID: 177904 [Multi-domain]  Cd Length: 470  Bit Score: 67.53  E-value: 9.90e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     279 PKLVLFTSEHSHYSIKKAGAALGFGtdnVILIKCNERGKIIPADLEAKILDAKQKgfvPLYVNATAGTTVYGAFDPIQEI 358
Cdd:PLN02263 177 PDGILYASRESHYSVFKAARMYRME---CVKVDTLVSGEIDCADFKAKLLANKDK---PAIINVNIGTTVKGAVDDLDLV 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     359 ADICEKY-----NLWLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGIlqgcNQMCAgy 433
Cdd:PLN02263 251 IKTLEECgfsqdRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----NVLSS-- 324
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56184     434 lfqpdkqyDVSY-DTGDKAIQCGR--HVDIFkFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN 495
Cdd:PLN02263 325 --------NVEYlASRDATIMGSRngHAPIF-LWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLRE 380
AAT_I cd01494
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ...
240-418 8.05e-09

Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).


Pssm-ID: 99742 [Multi-domain]  Cd Length: 170  Bit Score: 55.08  E-value: 8.05e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    240 NKDGDGIFSPGGAISNMYSIMAARykyfpevktkgmaaVPKLVLFTSEHSHYSIKKAGAALGFGtdNVILIKCNERGKii 319
Cdd:cd01494  15 PGNDKAVFVPSGTGANEAALLALL--------------GPGDEVIVDANGHGSRYWVAAELAGA--KPVPVPVDDAGY-- 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    320 pADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHrhkLSGIERANSVT 399
Cdd:cd01494  77 -GGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGV---LIPEGGADVVT 152
                       170
                ....*....|....*....
gi 56184    400 WNPHKMMGVlLQCSAILVK 418
Cdd:cd01494 153 FSLHKNLGG-EGGGVVIVK 170
Aminotran_5 pfam00266
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes ...
223-513 8.59e-07

Aminotransferase class-V; This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.


Pssm-ID: 425567 [Multi-domain]  Cd Length: 368  Bit Score: 51.48  E-value: 8.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      223 LMEQiTLKKMREIIGWSNKDgDGIFSPGGAisnmYSIMAARYKYFPEVKTKGmaavpKLVLFTSEHsHYSIKKAGAALGF 302
Cdd:pfam00266  44 AYEE-AREKVAEFINAPSND-EIIFTSGTT----EAINLVALSLGRSLKPGD-----EIVITEMEH-HANLVPWQELAKR 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      303 GTDNVILIKCNERGKIIPADLEAKIlDAKQKgfvplYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGgglLMS 382
Cdd:pfam00266 112 TGARVRVLPLDEDGLLDLDELEKLI-TPKTK-----LVAITHVSNVTGTIQPVPEIGKLAHQYGALVLVDAAQA---IGH 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      383 RKHRHKLSGIERANSVTwnpHKMM-----GVLLQCSAILVKEKGILQGcnqmcAGYLFQPDKQYDVSYDTGDK------- 450
Cdd:pfam00266 183 RPIDVQKLGVDFLAFSG---HKLYgptgiGVLYGRRDLLEKMPPLLGG-----GGMIETVSLQESTFADAPWKfeagtpn 254
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56184      451 ---AIQCGRHVDifkfWLMwkakgTVGFENQINKCLELAEYLYAKIKNREEFEmvFNGEPEHTNVC 513
Cdd:pfam00266 255 iagIIGLGAALE----YLS-----EIGLEAIEKHEHELAQYLYERLLSLPGIR--LYGPERRASII 309
Orn_deC_like cd00615
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
347-419 6.82e-06

Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.


Pssm-ID: 99739 [Multi-domain]  Cd Length: 294  Bit Score: 48.01  E-value: 6.82e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56184    347 TVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMS---RKHRHKLSGIERANSVtwnpHKMMGVLLQCSAILVKE 419
Cdd:cd00615 164 TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHpilPSSAAMAGADIVVQST----HKTLPALTQGSMIHVKG 235
TA_like cd06502
Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP) ...
233-374 1.82e-05

Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.


Pssm-ID: 99748 [Multi-domain]  Cd Length: 338  Bit Score: 46.94  E-value: 1.82e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    233 REIIGwsnkDGDGIFSPGGAISNMYSIMAarykyfpevktkgMAAVPKLVLfTSEHSHYSIKKAGAALGFGTDNVILIKc 312
Cdd:cd06502  42 AELFG----KEAALFVPSGTAANQLALAA-------------HTQPGGSVI-CHETAHIYTDEAGAPEFLSGVKLLPVP- 102
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 56184    313 NERGKIIPADLEAKILDAKQKGFVPLYV----NATAGTTVYgafdPIQEIADICE---KYNLWLHVDAA 374
Cdd:cd06502 103 GENGKLTPEDLEAAIRPRDDIHFPPPSLvsleNTTEGGTVY----PLDELKAISAlakENGLPLHLDGA 167
NifS COG1104
Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino ...
283-374 2.54e-04

Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino acid transport and metabolism];


Pssm-ID: 440721 [Multi-domain]  Cd Length: 381  Bit Score: 43.50  E-value: 2.54e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    283 LFTS--EHShySIKKAGAAL---GFgtdNVILIKCNERGKIIPADLEAKIldAKQKGFVPL-YVNATAGTtVYgafdPIQ 356
Cdd:COG1104  93 IITSaiEHP--AVLETARFLekeGF---EVTYLPVDEDGRVDLEALEAAL--RPDTALVSVmHANNETGT-IQ----PIA 160
                        90
                ....*....|....*...
gi 56184    357 EIADICEKYNLWLHVDAA 374
Cdd:COG1104 161 EIAEIAKEHGVLFHTDAV 178
LdcC COG1982
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
347-422 4.31e-04

Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];


Pssm-ID: 441585 [Multi-domain]  Cd Length: 486  Bit Score: 43.18  E-value: 4.31e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    347 TVYGAFDPIQEIADICEKYNLWLHVDAAWGGgllmsrkHRH-----KLSGIER-----ANSVtwnpHKMMGVLLQCSAIL 416
Cdd:COG1982 171 TYYGVCYDLKAIAELAHEHGIPVLVDEAHGA-------HFGfhpdlPRSAMEAgadlvVQST----HKTLGALTQSSMLH 239

                ....*.
gi 56184    417 VKEKGI 422
Cdd:COG1982 240 VKGGRV 245
Beta_elim_lyase pfam01212
Beta-eliminating lyase;
231-374 1.91e-03

Beta-eliminating lyase;


Pssm-ID: 426128 [Multi-domain]  Cd Length: 288  Bit Score: 40.66  E-value: 1.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      231 KMREIIGwsnKDGdGIFSPGGAISNMYSIMAArykyfpevktkgmaAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILI 310
Cdd:pfam01212  40 RVAELFG---KEA-ALFVPSGTAANQLALMAH--------------CQRGDEVICGEPAHIHFDETGGHAELGGVQPRPL 101
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184      311 KCNERGKIIPADLEAKILDAKQKGFVPLYV------NATAGTTVYgAFDPIQEIADICEKYNLWLHVDAA 374
Cdd:pfam01212 102 DGDEAGNMDLEDLEAAIREVGADIFPPTGLislentHNSAGGQVV-SLENLREIAALAREHGIPVHLDGA 170
KBL_like cd06454
KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate ...
320-380 2.54e-03

KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.


Pssm-ID: 99747 [Multi-domain]  Cd Length: 349  Bit Score: 40.24  E-value: 2.54e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56184    320 PADLEAKILDAKQKgFVPLYVnATAGttVY---GAFDPIQEIADICEKYNLWLHVDAAWGGGLL 380
Cdd:cd06454 117 MEDLEKLLREARRP-YGKKLI-VTEG--VYsmdGDIAPLPELVDLAKKYGAILFVDEAHSVGVY 176
PLN02651 PLN02651
cysteine desulfurase
246-374 4.32e-03

cysteine desulfurase


Pssm-ID: 178257 [Multi-domain]  Cd Length: 364  Bit Score: 39.64  E-value: 4.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184     246 IFSPGGAISNMYSIMAArYKYFPEVKtkgmaavPKLVLFTSEHShySIKKAGAALGFGTDNVILIKCNERGKIIPADLEA 325
Cdd:PLN02651  64 IFTSGATESNNLAIKGV-MHFYKDKK-------KHVITTQTEHK--CVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAA 133
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 56184     326 KILDAkqkgfvplyvnaTAGTTV------YGAFDPIQEIADICEKYNLWLHVDAA 374
Cdd:PLN02651 134 AIRPD------------TALVSVmavnneIGVIQPVEEIGELCREKKVLFHTDAA 176
CsdA COG0520
Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism];
282-374 8.71e-03

Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism];


Pssm-ID: 440286 [Multi-domain]  Cd Length: 396  Bit Score: 38.58  E-value: 8.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56184    282 VLFTSEHSHYS--------IKKAGAalgfgtdNVILIKCNERGKIIPADLEAKIlDAKQKgfvplYVNATAGTTVYGAFD 353
Cdd:COG0520 105 EILITEMEHHSnivpwqelAERTGA-------EVRVIPLDEDGELDLEALEALL-TPRTK-----LVAVTHVSNVTGTVN 171
                        90       100
                ....*....|....*....|.
gi 56184    354 PIQEIADICEKYNLWLHVDAA 374
Cdd:COG0520 172 PVKEIAALAHAHGALVLVDGA 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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