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Conserved domains on  [gi|560182872|ref|WP_023599470|]
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ribosome maturation factor RimM [Lactobacillus johnsonii]

Protein Classification

ribosome maturation factor RimM( domain architecture ID 11478117)

ribosome maturation factor RimM is an accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region

Gene Ontology:  GO:0043022|GO:0042274
PubMed:  23293003

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 1-171 3.78e-64

16S rRNA-processing protein RimM; Provisional


:

Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 194.59  E-value: 3.78e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRlFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICS 80
Cdd:PRK00122   4 PEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPW-LLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  81 KELYVAETDQQELPKGSYYFKDILNCPVYDAEtGEKLGVLENIETPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKR 160
Cdd:PRK00122  83 CELFVPRSQLPELEEDEYYWHDLIGLEVVDED-GEELGKVTDILETGANDVLVVLKDKKEERLIPFVEEVVKEVDLEAKR 161

                        170
                 ....*....|.
gi 560182872 161 IEVTLLEGLRD 171
Cdd:PRK00122 162 ITVDWPEGLLD 172
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 1-171 3.78e-64

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 194.59  E-value: 3.78e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRlFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICS 80
Cdd:PRK00122   4 PEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPW-LLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  81 KELYVAETDQQELPKGSYYFKDILNCPVYDAEtGEKLGVLENIETPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKR 160
Cdd:PRK00122  83 CELFVPRSQLPELEEDEYYWHDLIGLEVVDED-GEELGKVTDILETGANDVLVVLKDKKEERLIPFVEEVVKEVDLEAKR 161

                        170
                 ....*....|.
gi 560182872 161 IEVTLLEGLRD 171
Cdd:PRK00122 162 ITVDWPEGLLD 172
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 1-172 3.79e-61

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 186.85  E-value: 3.79e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICS 80
Cdd:COG0806    3 MEDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDPDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEALRG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  81 KELYVAETDQQELPKGSYYFKDILNCPVYDaETGEKLGVLENIETPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKR 160
Cdd:COG0806   83 AELYVPRDDLPELEEDEFYWHDLIGLEVVD-EDGEELGKVTDVLETGANDVLVVKGPGGKEVLIPFVDEFVPEVDLEAGR 161

                        170
                 ....*....|..
gi 560182872 161 IEVTLLEGLRDE 172
Cdd:COG0806  162 IVVDPPEGLLDL 173
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 4-168 3.46e-44

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 143.50  E-value: 3.46e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872    4 YFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICSKEL 83
Cdd:TIGR02273   1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGSKQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   84 YVAETDQQELPKGSYYFKDILNCPVYDAEtGEKLGVLENIETPGANDIWEIKPEKGKSFW-IPNIESVVKKVDLANKRIE 162
Cdd:TIGR02273  81 FVPREALPELEEDEYYWTDLIGLEVVTEE-GEELGKVVEILETGANDVLVVRSKKGKKEVlIPFVEEIVKEIDLEKKIIT 159


                  ....*.
gi 560182872  163 VTLLEG 168
Cdd:TIGR02273 160 VDWPEG 165
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 6-89 9.19e-29

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 101.48  E-value: 9.19e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872    6 EVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICSKELYV 85
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKKKGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 560182872   86 AETD 89
Cdd:pfam01782  81 PRSD 84
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 1-171 3.78e-64

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 194.59  E-value: 3.78e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRlFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICS 80
Cdd:PRK00122   4 PEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPW-LLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  81 KELYVAETDQQELPKGSYYFKDILNCPVYDAEtGEKLGVLENIETPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKR 160
Cdd:PRK00122  83 CELFVPRSQLPELEEDEYYWHDLIGLEVVDED-GEELGKVTDILETGANDVLVVLKDKKEERLIPFVEEVVKEVDLEAKR 161

                        170
                 ....*....|.
gi 560182872 161 IEVTLLEGLRD 171
Cdd:PRK00122 162 ITVDWPEGLLD 172
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 1-172 3.79e-61

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 186.85  E-value: 3.79e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICS 80
Cdd:COG0806    3 MEDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDPDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEALRG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  81 KELYVAETDQQELPKGSYYFKDILNCPVYDaETGEKLGVLENIETPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKR 160
Cdd:COG0806   83 AELYVPRDDLPELEEDEFYWHDLIGLEVVD-EDGEELGKVTDVLETGANDVLVVKGPGGKEVLIPFVDEFVPEVDLEAGR 161

                        170
                 ....*....|..
gi 560182872 161 IEVTLLEGLRDE 172
Cdd:COG0806  162 IVVDPPEGLLDL 173
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 4-168 3.46e-44

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 143.50  E-value: 3.46e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872    4 YFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICSKEL 83
Cdd:TIGR02273   1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGSKQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   84 YVAETDQQELPKGSYYFKDILNCPVYDAEtGEKLGVLENIETPGANDIWEIKPEKGKSFW-IPNIESVVKKVDLANKRIE 162
Cdd:TIGR02273  81 FVPREALPELEEDEYYWTDLIGLEVVTEE-GEELGKVVEILETGANDVLVVRSKKGKKEVlIPFVEEIVKEIDLEKKIIT 159


                  ....*.
gi 560182872  163 VTLLEG 168
Cdd:TIGR02273 160 VDWPEG 165
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 6-89 9.19e-29

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 101.48  E-value: 9.19e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872    6 EVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICSKELYV 85
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKKKGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 560182872   86 AETD 89
Cdd:pfam01782  81 PRSD 84
rimM PRK13829
16S rRNA-processing protein RimM; Provisional
 6-141 7.57e-09

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184352 [Multi-domain]  Cd Length: 162  Bit Score: 52.05  E-value: 7.57e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   6 EVGKILSPHGLKGEVKVNattdfpeerlatGSRLFIKNNKQYEE----LIVENTRRHKQFYLVKFEKLDDIDQAEKICSK 81
Cdd:PRK13829   5 EIGRFGGPYGVQGGLKFR------------GEPVVLDLPRVYVEglgwRAIERAERVGPELVLHLAGVTSREGAEALVGL 72

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  82 ELYVAETDQQELPKGSYYFKDILNCPVYdaETGEKLGVLENIETPGANDIWEIKPEKGKS 141
Cdd:PRK13829  73 RVYADDADLPPLEEGSYYYHELRGLPVY--VDGEPLGEVVDVEDAGAQDLLVIRHVGGSL 130
rimM PRK14590
16S rRNA-processing protein RimM; Provisional
 7-162 1.36e-08

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173054 [Multi-domain]  Cd Length: 171  Bit Score: 51.39  E-value: 1.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   7 VGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQY--EELIVENTRRHKQFYLVKFEKLDDIDQAEKICSKELY 84
Cdd:PRK14590   3 LGQLGKPFGIKGWLRVNVRGETLHTLKAPATLKLGKEDPQFpeSEIALLEIRPHGGKFLVRFEGYDTPEEAVKWRGGSLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  85 VAETDQQELP-KGSYYFKDILNCPVYDaETGEKLGV-LENIETPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKRIE 162
Cdd:PRK14590  83 LPQELLPKIEtKGEFYSEDLIGLQAID-ETGKPLNWkLTDVQDNPAHPILVFIKGEGEEILIPFLNVFVGDLDLEKQTIV 161
rimM PRK14592
16S rRNA-processing protein RimM; Provisional
 7-167 1.22e-07

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173056 [Multi-domain]  Cd Length: 165  Bit Score: 48.95  E-value: 1.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   7 VGKILSPHGLKGEVKVNATTDFPEERLATGSrlFIKNNKQYEELIVENTRrhKQFYLVKFEKLDDIDQAEKICSKELYVA 86
Cdd:PRK14592   5 LGVITSPHGIKGHVKIKTFTEDPENISAYGK--LTDGSNTYKISVVSVIG--ANLVIAKISGINSRTEAELLRNKKLYVE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  87 ETDQQELPKGSYYFKDILNCPVYdAETGEKLGVLENIETPGANDIWEIKP-EKGKSFWIPNIESVVKKVDLANKRIEVTL 165
Cdd:PRK14592  81 RSKLPNLNEDEFYQSDLIGMEVK-LEDNTIYGYIKKIYNFGSCDIIEISLtSTKKSTMLPFTKEIFPHINVKERYIILVP 159


                 ..
gi 560182872 166 LE 167
Cdd:PRK14592 160 PE 161
rimM PRK14591
16S rRNA-processing protein RimM; Provisional
 3-163 1.53e-07

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173055 [Multi-domain]  Cd Length: 169  Bit Score: 48.50  E-value: 1.53e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   3 EYFEVGKILSPHGLKGEVKVNATTDFPEERLATGS-RLFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICSK 81
Cdd:PRK14591   4 DFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDwYIQLPATNVWQQLKGESVLKRADKVYIKLANINNADTAKKYVNA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  82 ELYVAETDQQELPKGSYYFKDILNCPVYDAeTGEKLGVLENIETPGANDIWEIKpEKGKSFWIPNIESVVKKVDLANKRI 161
Cdd:PRK14591  84 LIGVPKRALPQLAEDEVYFKDLIGCSVKNI-NNDSFGVVVDIIETGANEVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKI 161


                 ..
gi 560182872 162 EV 163
Cdd:PRK14591 162 VV 163
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 96-170 1.62e-05

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 41.12  E-value: 1.62e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 560182872   96 GSYYFKDILNCPVYDaETGEKLGVLENIE-TPGANDIWEIKPEKGKSFWIPN--IESVVKKVDLANKRIEVTLLEGLR 170
Cdd:pfam05239   2 DEFYASDLIGLEVYT-EDGEKLGKVKDVViDEGEGRVRYLVVSVGGFLGGKEvlIPFDKLNVKLGKDRIIVDPPKELL 78
rimM PRK14593
ribosome maturation factor RimM;
1-167 1.09e-03

ribosome maturation factor RimM;


Pssm-ID: 237760 [Multi-domain]  Cd Length: 184  Bit Score: 38.08  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   1 MTEYFEVGKILSPHGLKGEVKVNATTDFPeERLATGSRLFI------KNNKQYEELIVENTRRHKQfyLVKFEKLDDIDQ 74
Cdd:PRK14593   1 MVSMLLVGRIGKSVGLNGGLKLHLESDFP-ECLKKGVKVSVaplnafSCASSFKDYVIHSYEHAKN--LLFLETIHTPEK 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  75 AEKICSKELYVAETDQQE---LPKGSYYFKDILNCPVydAETGEKLGVLENIETPGANDIWEIKP-----EKG--KSFWI 144
Cdd:PRK14593  78 AKELTNLGLFMSEAESKKlcvLKEGEFFYCDLVGLSV--VEENEILGKVIEIQRISQTDYFMVETtlslvEKGlaKIFLI 155

                        170       180
                 ....*....|....*....|....*..
gi 560182872 145 PNIESVVKKVDLANKRIEV----TLLE 167
Cdd:PRK14593 156 PYRDFYIQEILLQDKKITThnakTLLE 182
rimM PRK14594
16S rRNA-processing protein RimM; Provisional
 5-170 1.65e-03

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173058 [Multi-domain]  Cd Length: 166  Bit Score: 37.07  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872   5 FEVGKILSPHGLKGEVKV----NATTDFPEerLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKFEKLDDIDQAEKICS 80
Cdd:PRK14594   2 FVKGIILSSYGINGYAKVksisNNFCDFIN--LKNNKLVLKKSNCSSIEVKVEDVSLKNNSLLLKFEEFNAPEPIKPLIG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 560182872  81 KELYVAETDQQELPKGSYYFKDILNCPVYDaeTGEKLGVLENIETPGANDIWEIKPeKGKSFWIPNIESVVKKVDLANKR 160
Cdd:PRK14594  80 FELWVDDELASKLEEGEYYFGKLIGYAIVN--DGKELGEVVSFFECLNSVLLEVKV-GIKLFFVPFLSIYLGDINRELKT 156

                        170
                 ....*....|
gi 560182872 161 IEVTLLEGLR 170
Cdd:PRK14594 157 IELKVLDLLK 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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