|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
2-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 754.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 2 AFEGLTERLQKTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGSDILDGLNPAQQIVKLVND 81
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 82 ELIKMMGTEDAPLNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQQIDVPVY 161
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGK-KPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 162 QEGTDVNPVDIVRHGLEQAAENKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKL 241
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 242 DITGVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGDMLTLIEKTQKDFDQKQAAEMT 321
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 322 QKIRENTFDFNDFVDQLNQVQNMGPIEDIMKMIPGMANNPAMQNVNVDPKDLEHTKAIVYSMTKAERENPDLLNPSRRRR 401
Cdd:COG0541 320 KKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKRR 399
|
410 420
....*....|....*....|....
gi 557700200 402 IAAGSGRPVVEVNRMIKQFNQMKK 425
Cdd:COG0541 400 IAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
3-427 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 652.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 3 FEGLTERLQKTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGSDILDGLNPAQQIVKLVNDE 82
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 83 LIKMMGTEDAPLNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKNEQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVYQ 162
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 163 EGTDVNPVDIVRHGLEQAAENKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLD 242
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 243 ITGVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGDMLTLIEKTQKDFDQKQAAEMTQ 322
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 323 KIRENTFDFNDFVDQLNQVQNMGPIEDIMKMIPGMANN-PAMQNVNVDPKDLEHTKAIVYSMTKAERENPDLLNPSRRRR 401
Cdd:TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVkPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400
|
410 420
....*....|....*....|....*.
gi 557700200 402 IAAGSGRPVVEVNRMIKQFNQMKKMM 427
Cdd:TIGR00959 401 IAAGSGTTVQDVNKLIKRFEQMKKMM 426
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-446 |
1.07e-170 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 487.41 E-value: 1.07e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 6 LTERLQKTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGSDILDGLNPAQQIVKLVNDELIK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 86 MMGtEDAPLNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGT 165
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 166 DVNPVDIVRHGLEQAAenKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITG 245
Cdd:PRK00771 159 NKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 246 VILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGDMLTLIEKTQKDFDQKQAAEMTQKIR 325
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 326 ENTFDFNDFVDQLNQVQNMGPIEDIMKMIPGMANNPAMQNVNVDPKDLEHTKAIVYSMTKAERENPDLLNPSRRRRIAAG 405
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRIARG 396
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 557700200 406 SGRPVVEVNRMIKQFNQMKKMMNQMSKGNFNGMEGMLGNGI 446
Cdd:PRK00771 397 SGTTVEDVRELLKYYKMMKKAMKQLKKGKGKMGKLMKQFGF 437
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-295 |
9.55e-115 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 335.34 E-value: 9.55e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 102 TIIMMSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQAA 181
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGK-KVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 182 ENKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAAL 261
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 557700200 262 SIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRI 295
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
101-297 |
3.33e-107 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 316.27 E-value: 3.33e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 101 PTIIMMSGLQGAGKTTTTGKLALKLKNEQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQA 180
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 181 AENKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAA 260
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 557700200 261 LSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRILG 297
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-295 |
2.29e-98 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 293.68 E-value: 2.29e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 102 TIIMMSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQAA 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGK-KVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 182 ENKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAAL 261
Cdd:pfam00448 80 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 557700200 262 SIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRI 295
Cdd:pfam00448 160 SIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
6-426 |
1.18e-91 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 285.19 E-value: 1.18e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 6 LTERLQKTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGSDILDGLNPAQQIVKLVNDELIK 85
Cdd:TIGR01425 5 LGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 86 MMGTEDAPLNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKNeQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGT 165
Cdd:TIGR01425 85 LVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKR-RGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 166 DVNPVDIVRHGLEQAAENKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITG 245
Cdd:TIGR01425 164 ESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVGS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 246 VILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGDMLTLIEKTQKDFDQKQAAEMTQKIR 325
Cdd:TIGR01425 244 VIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHLK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 326 ENTFDFNDFVDQLNQVQNMGPIEDIMKMIPGMaNNPAMQNVNVD--PKDLEHTKAIVYSMTKAERENPDLL---NPSRRR 400
Cdd:TIGR01425 324 EGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGL-SHPMMSKGNEEetSAKIKVFMTIMDSMTDRELDSTAKTmlkDPSRIR 402
|
410 420
....*....|....*....|....*.
gi 557700200 401 RIAAGSGRPVVEVNRMIKQFNQMKKM 426
Cdd:TIGR01425 403 RVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
3-297 |
1.46e-87 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 269.97 E-value: 1.46e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 3 FEGLTERLQKT---FTN-----LRKKGKVTEADLRdtmrEIRLALLEADVNFKVVKQFVKTVRDQAIGSDILDglnpAQQ 74
Cdd:COG0552 2 FERLKEGLSKTrsgLGEklkslFSGKKKIDEDLLE----ELEELLIEADVGVETTEEIIEELRERVKRKKLKD----PEE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 75 IVKLVNDELIKMMGTEDAPLNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQ 154
Cdd:COG0552 74 LKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGK-SVLLAAGDTFRAAAIEQLEVWGE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 155 QIDVPVY--QEGTDvnPVDIVRHGLEQAAENKNDYVFIDTAGRLQIDEKLMQELADIK------ALAHPDEILLVVDAMT 226
Cdd:COG0552 153 RVGVPVIaqKEGAD--PAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKrvikklDPDAPHEVLLVLDATT 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 557700200 227 GQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRILG 297
Cdd:COG0552 231 GQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
103-295 |
1.69e-79 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 245.36 E-value: 1.69e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 103 IIMMSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQAAE 182
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGK-KVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 183 NKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAALS 262
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 557700200 263 IRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRI 295
Cdd:cd03115 161 IVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
3-297 |
1.37e-76 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 242.31 E-value: 1.37e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 3 FEGLTERLQKTFTNLRK-------KGKVTEadlrDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGSDILDglnpAQQI 75
Cdd:PRK10416 17 FERLKKGLSKTRENFGEginglfaKKKIDE----DLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKD----PEEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 76 VKLVNDELIKMMGTEDAPLNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQQ 155
Cdd:PRK10416 89 KELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGK-KVLLAAGDTFRAAAIEQLQVWGER 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 156 IDVPVY--QEGTDvnPVDIVRHGLEQAAENKNDYVFIDTAGRLQIDEKLMQELADI-----KALAH-PDEILLVVDAMTG 227
Cdd:PRK10416 168 VGVPVIaqKEGAD--PASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIkrvikKADPDaPHEVLLVLDATTG 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 228 QNAVNTAEGFNEKLDITGVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRILG 297
Cdd:PRK10416 246 QNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
27-296 |
2.65e-71 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 227.52 E-value: 2.65e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 27 DLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGSDILDGLNPAQQIVKLVNDELIKMMGTE-DAPLNKSPKIPTIIM 105
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtDLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 106 MSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQAAENKN 185
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGK-SVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 186 DYVFIDTAGRLQIDEKLMQELADIK------ALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGA 259
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKrvikkvDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 557700200 260 ALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRIL 296
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
103-295 |
1.51e-67 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 214.75 E-value: 1.51e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 103 IIMMSGLQGAGKTTTTGKLALKLKNeQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQAAE 182
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQK-KGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 183 NKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAALS 262
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 557700200 263 IRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRI 295
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
12-297 |
1.47e-64 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 211.75 E-value: 1.47e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 12 KTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGSDILDGLNPAQQIVKLVNDELIKMMG--- 88
Cdd:PRK14974 47 PGFFDKAKITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSvgd 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 89 -TEDAPLNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKnEQKARPLLIAADVYRPAAIDQLVQVGQQIDVPV--YQEGT 165
Cdd:PRK14974 127 lFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVikHKYGA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 166 DvnPVDIVRHGLEQAAENKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITG 245
Cdd:PRK14974 206 D--PAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDG 283
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 557700200 246 VILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRILG 297
Cdd:PRK14974 284 VILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
102-295 |
7.26e-64 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 205.11 E-value: 7.26e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 102 TIIMMSGLQGAGKTTTTGKLALKLKNEQKaRPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQAA 181
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGK-KVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 182 ENKNDYVFIDTAGRLQIDEKLMQELADIKALAH------PDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDT 255
Cdd:cd17874 80 ARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 557700200 256 RGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASRI 295
Cdd:cd17874 160 KGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
328-425 |
4.43e-41 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 141.77 E-value: 4.43e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 328 TFDFNDFVDQLNQVQNMGPIEDIMKMIPGMANNPAMQNvnvDPKDLEHTKAIVYSMTKAERENPDLLNPSRRRRIAAGSG 407
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDID---SEKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSG 77
|
90
....*....|....*...
gi 557700200 408 RPVVEVNRMIKQFNQMKK 425
Cdd:pfam02978 78 TSVQEVNRLLKQFKQMKK 95
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
8-297 |
1.09e-40 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 149.25 E-value: 1.09e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 8 ERLQKTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAigsdildglnPAQQIVKLVNDELIKMM 87
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEALARRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 88 GTEDAPLNKSPKIptiIMMSGLQGAGKTTTTGKLALKLKNEQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVYqegTDV 167
Cdd:COG1419 154 PVAEDPLLDEGGV---IALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVE---VAY 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 168 NPVDivrhgLEQAAE--NKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDA-MTGQNAVNTAEGFNEkLDIT 244
Cdd:COG1419 228 DPEE-----LKEALErlRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAFSS-LGLD 301
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 557700200 245 GVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKM-EDLDVFHPDRMASRILG 297
Cdd:COG1419 302 GLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
104-289 |
3.11e-39 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 140.83 E-value: 3.11e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 104 IMMSGLQGAGKTTTTGKLALKLKnEQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQAAEN 183
Cdd:cd17876 3 IVFCGVNGVGKSTNLAKIAYWLL-SNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 184 KNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKL----------DITGVILTKLDG 253
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFDT 161
|
170 180 190
....*....|....*....|....*....|....*..
gi 557700200 254 -DTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPD 289
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVK 198
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
103-295 |
1.46e-29 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 114.18 E-value: 1.46e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 103 IIMMSGLQGAGKTTTTGKLALKLKNEQKARPLLIAADVYRPAAIDQLVQVGQQIDVpvyqegtdvnPVDIVR--HGLEQA 180
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEdpEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 181 AEN--KNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMT-GQNAVNTAEGFnEKLDITGVILTKLDGDTRG 257
Cdd:cd17873 72 LERlsDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETTSL 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 557700200 258 GAALSIRSVTGKPIKFVGQGEKM-EDLDVFHPDRMASRI 295
Cdd:cd17873 151 GSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
10-297 |
1.58e-25 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 108.44 E-value: 1.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 10 LQKTFTNLrKKGKVTEADLRDTMREIRLALLEADVNFKVVKQfvktvrdqaIGSDILDGLNPAQ-QIVKLVNDELIKMMG 88
Cdd:PRK05703 142 LKNLLEDQ-LSGLRQVERIPPEFAELYKRLKRSGLSPEIAEK---------LLKLLLEHMPPRErTAWRYLLELLANMIP 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 89 TEDAPLNKSPKIptiIMMSGLQGAGKTTTTGKLALKLKNEQKARPL-LIAADVYRPAAIDQLVQVGQQIDVPVyqegTDV 167
Cdd:PRK05703 212 VRVEDILKQGGV---VALVGPTGVGKTTTLAKLAARYALLYGKKKVaLITLDTYRIGAVEQLKTYAKIMGIPV----EVV 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 168 -NPVDivrhgLEQAAE--NKNDYVFIDTAGRLQIDEKLMQELAD-IKALAHPDEILLVVdAMTGQNAV--NTAEGFNeKL 241
Cdd:PRK05703 285 yDPKE-----LAKALEqlRDCDVILIDTAGRSQRDKRLIEELKAlIEFSGEPIDVYLVL-SATTKYEDlkDIYKHFS-RL 357
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 557700200 242 DITGVILTKLDgDTRG-GAALSIRSVTGKPIKFV--GQgEKMEDLDVFHPDRMASRILG 297
Cdd:PRK05703 358 PLDGLIFTKLD-ETSSlGSILSLLIESGLPISYLtnGQ-RVPDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
1.21e-22 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 91.37 E-value: 1.21e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 557700200 6 LTERLQKTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGSdilDGLNPAQQIVKLVNDEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGE---KKLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
5.17e-19 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 81.06 E-value: 5.17e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 557700200 10 LQKTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAIGsDILDGLNPAQQIVKLVNDELIKMM 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
103-301 |
7.71e-15 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 76.95 E-value: 7.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 103 IIMMSGLQGAGKTTTTGKLALKLKNEQKARPL-LIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNpvdivrhgLEQAA 181
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVaLVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES--------LLDLL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 182 ENKNDY--VFIDTAGRLQIDEKLMQELADIKAlAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGA 259
Cdd:PRK12727 424 ERLRDYklVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGS 502
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 557700200 260 ALSIRSVTGKPIKFVGQGEKM-EDLdvfHPDRMASRILGMGDM 301
Cdd:PRK12727 503 ALSVVVDHQMPITWVTDGQRVpDDL---HRANAASLVLRLEDL 542
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
33-194 |
1.22e-14 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 74.29 E-value: 1.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 33 REIRLALLEADVNFKVVKQFVKTVRDQAigsdildglnPAQQIVKLVNDELIKMM--GTEDAPLNKSPKIptiIMMSGLQ 110
Cdd:TIGR03499 137 AKLYERLLEAGVSEELARELLEKLPEDA----------DAEDAWRWLREALEGMLpvKPEEDPILEQGGV---IALVGPT 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 111 GAGKTTTTGKLALKLKNEQKARPL-LIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDvnpvdivrHGLEQAAE--NKNDY 187
Cdd:TIGR03499 204 GVGKTTTLAKLAARFALEHGKKKVaLITTDTYRIGAVEQLKTYAEILGIPVKVARDP--------KELREALDrlRDKDL 275
|
....*..
gi 557700200 188 VFIDTAG 194
Cdd:TIGR03499 276 ILIDTAG 282
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
51-282 |
2.08e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 65.51 E-value: 2.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 51 QFVKTVRD---QAIGSDILDGLNPAQQIVKLVNdelIKMMGTEDAPLNKSpkipTIIMMSGLQGAGKTTTTGKLALK-LK 126
Cdd:PRK14722 91 QLVRMIVDnlpEGEGYDTLDAAADWAQSVLAAN---LPVLDSEDALMERG----GVFALMGPTGVGKTTTTAKLAARcVM 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 127 NEQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVY--QEGTDVNpvdivrhgLEQAAENKNDYVFIDTAGRLQIDEKLMQ 204
Cdd:PRK14722 164 RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHavKDGGDLQ--------LALAELRNKHMVLIDTIGMSQRDRTVSD 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 205 ELADIKALAHPDEILLVVDAMTGQNAVN-------TAEGFNEKL--DITGVILTKLDGDTRGGAALSIRSVTGKPIKFVG 275
Cdd:PRK14722 236 QIAMLHGADTPVQRLLLLNATSHGDTLNevvqayrSAAGQPKAAlpDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVS 315
|
....*..
gi 557700200 276 QGEKMED 282
Cdd:PRK14722 316 TGQKVPE 322
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
108-283 |
3.89e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 65.59 E-value: 3.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 108 GLQGAGKTTTTGKLA----LKLKNEQKArplLIAADVYRPAAIDQLVQVGQQIDVPVYQegtdVNPVDIVRHGLeQAAEN 183
Cdd:PRK14723 192 GPTGVGKTTTTAKLAarcvAREGADQLA---LLTTDSFRIGALEQLRIYGRILGVPVHA----VKDAADLRFAL-AALGD 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 184 KNdYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVdamtgqNAVNTAEGFNEKL---------DITGVILTKLDGD 254
Cdd:PRK14723 264 KH-LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLL------NAASHGDTLNEVVhayrhgageDVDGCIITKLDEA 336
|
170 180 190
....*....|....*....|....*....|..
gi 557700200 255 TRGGAAL--SIRSVTgkPIKFVGQGEKM-EDL 283
Cdd:PRK14723 337 THLGPALdtVIRHRL--PVHYVSTGQKVpEHL 366
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
103-297 |
6.14e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 63.99 E-value: 6.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 103 IIMMSGLQGAGKTTTTGKLALKLKNEQKARPLlIAADVYRPAAIDQLVQVGQQIDVPVYqegTDVNPVDivrhgLEQAAE 182
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGF-ITTDTFRSGAVEQFQGYADKLDVELI---VATSPAE-----LEEAVQ 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 183 -----NKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRG 257
Cdd:PRK12726 279 ymtyvNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRI 358
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 557700200 258 GAALSIRSVTGKPIKFVGQGEKMEDlDVFHPDR--MASRILG 297
Cdd:PRK12726 359 GDLYTVMQETNLPVLYMTDGQNITE-NIFRPKSrwLAERFVG 399
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
104-281 |
1.30e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 63.16 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 104 IMMSGLQGAGKTTTTGKLALKLKNEQKARPLlIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQAaen 183
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGF-ITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA--- 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 184 KNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDA-MTGQNAVNTAEGFNEkLDITGVILTKLDGDTRGGAALS 262
Cdd:PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLK 398
|
170
....*....|....*....
gi 557700200 263 IRSVTGKPIKFVGQGEKME 281
Cdd:PRK11889 399 IPAVSSAPIVLMTDGQDVK 417
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
103-276 |
4.02e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 61.52 E-value: 4.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 103 IIMMSGLQGAGKTTTTGKLALKLKNEQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVYqegtdvnPVDIVRHGLEQAAE 182
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-------PVKDIKKFKETLAR 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 183 NKNDYVFIDTAG----RLQIDEKlMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGG 258
Cdd:PRK12724 298 DGSELILIDTAGyshrNLEQLER-MQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376
|
170 180
....*....|....*....|
gi 557700200 259 AALSIRSVTGKPIKF--VGQ 276
Cdd:PRK12724 377 SFLELADTYSKSFTYlsVGQ 396
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
73-296 |
3.06e-09 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 57.83 E-value: 3.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 73 QQIVKLVNDELIKMMGTEdaplNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKNEQKARPLlIAADVYRPAAIDQLVQV 152
Cdd:PRK06731 51 EEVIEYILEDMSSHFNTE----NVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF-ITTDHSRIGTVQQLQDY 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 153 GQQIDVPVYQEGTDVNPVDIVRHGLEQAaenKNDYVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDA-MTGQNAV 231
Cdd:PRK06731 126 VKTIGFEVIAVRDEAAMTRALTYFKEEA---RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMI 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 557700200 232 NTAEGFNEkLDITGVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKM-EDLDVFHPDRMASRIL 296
Cdd:PRK06731 203 EIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVkKNIHIATAEHLAKQML 267
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
108-296 |
3.08e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 52.64 E-value: 3.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 108 GLQGAGKTTTTGKLALKLKNEQKARPL-LIAADVYRPAAIDQLVQVGQQIDVPVYQEgTDVNPVDIVRHGLEqaaenKND 186
Cdd:PRK14721 198 GPTGVGKTTTTAKLAARAVIRHGADKVaLLTTDSYRIGGHEQLRIYGKLLGVSVRSI-KDIADLQLMLHELR-----GKH 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 187 YVFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAALSIRSV 266
Cdd:PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDAVIR 351
|
170 180 190
....*....|....*....|....*....|.
gi 557700200 267 TGKPIKFVGQGEKM-EDLDVFHPDRMASRIL 296
Cdd:PRK14721 352 RKLVLHYVTNGQKVpEDLHEANSRYLLHRIF 382
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
31-307 |
8.22e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 51.06 E-value: 8.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 31 TMREIRLALLEADVNFKVVKQFVKTVRDQAIGSDiLDGLNPAQQIVKLVNDELIKMMGtedaPLNKSPKiPTIIMMSGLQ 110
Cdd:PRK12723 110 TILKIEDILRENDFSESYIKDINEFIKKEFSLSD-LDDYDKVRDSVIIYIAKTIKCSG----SIIDNLK-KRVFILVGPT 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 111 GAGKTTTTGKLAL--KLKNEQKARPL-LIAADVYRPAAIDQLVQVGQQIDVPvyqegtdVNPVDIVRHGLEQAAENKN-D 186
Cdd:PRK12723 184 GVGKTTTIAKLAAiyGINSDDKSLNIkIITIDNYRIGAKKQIQTYGDIMGIP-------VKAIESFKDLKEEITQSKDfD 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 187 YVFIDTAGRLQIDEKLMQELAD-IKALAHPDEILLVVDAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAALSIRS 265
Cdd:PRK12723 257 LVLVDTIGKSPKDFMKLAEMKElLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIY 336
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 557700200 266 VTGKPIKFVGQGEKM-EDLDVFHPDRMASRILG--MGDMLTLIEK 307
Cdd:PRK12723 337 EMRKEVSYVTDGQIVpHNISIAEPLTFIKKINGyrISDDAEFIRK 381
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
101-265 |
2.38e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.37 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 101 PTIIMMSGLQGAGKTTTTGKLALKLkNEQKARPLLIAADVYRPAAIDQLVQVGqqidvpVYQEGTDVNPVDIVRHGLEQA 180
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALAREL-GPPGGGVIYIDGEDILEEVLDQLLLII------VGGKKASGSGELRLRLALALA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 181 AENKNDYVFIDTAGRLQIDEKLMQELadikalahpdeillvvdamtgQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAA 260
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLL---------------------LLEELRLLLLLKSEKNLTVILTTNDEKDLGPAL 133
|
....*
gi 557700200 261 LSIRS 265
Cdd:smart00382 134 LRRRF 138
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
101-250 |
4.78e-06 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 45.11 E-value: 4.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 101 PTIIMMSGLQGAGKTTTTGKLALKLkneqkarplliAADVYRPAAIDqlvqvgqqidvpvyqegTDvnpvdivrhgleqa 180
Cdd:cd01983 1 RVIAVTGGKGGVGKTTLAAALAVAL-----------AAKGYKVLLID-----------------LD-------------- 38
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 557700200 181 aenknDYVFIDTAGRLQIDEKLMQELADIkALAHPDEILLVVDAMTG--QNAVNTA---EGFNEKLDITGVILTK 250
Cdd:cd01983 39 -----DYVLIDGGGGLETGLLLGTIVALL-ALKKADEVIVVVDPELGslLEAVKLLlalLLLGIGIRPDGIVLNK 107
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
111-285 |
6.35e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 48.42 E-value: 6.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 111 GAGKTTTTGKLALKLKNEQKARPL-LIAADVYRPAAIDQLVQVGQQIDVPVY--QEGTDvnpvdivrhgLEQA-AENKND 186
Cdd:PRK06995 266 GVGKTTTTAKLAARCVMRHGASKVaLLTTDSYRIGGHEQLRIYGKILGVPVHavKDAAD----------LRLAlSELRNK 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 187 Y-VFIDTAGRLQIDEKLMQELADIKALAHPDEILLVVdamtgqNAVNTAEGFNE------KLDITGVILTKLDGDTRGGA 259
Cdd:PRK06995 336 HiVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLL------NATSHGDTLNEvvqayrGPGLAGCILTKLDEAASLGG 409
|
170 180 190
....*....|....*....|....*....|
gi 557700200 260 ALS--IRsvtGK-PIKFVGQGEKM-EDLDV 285
Cdd:PRK06995 410 ALDvvIR---YKlPLHYVSNGQRVpEDLHL 436
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
90-257 |
7.24e-04 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 41.33 E-value: 7.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 90 EDAPLNKSPKIPTIIMMSGLQGAGKTTTTGKLALKLKnEQKARPLLIAADVYRPAAIDQL----------VQVGQ----Q 155
Cdd:COG0489 82 LLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALA-QSGKRVLLIDADLRGPSLHRMLglenrpglsdVLAGEasleD 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 156 IDVPVYQEGTDV--------NPVDIVRHG-----LEQAAENkNDYVFIDTA-GRLQIDEKLMQELAdikalahpDEILLV 221
Cdd:COG0489 161 VIQPTEVEGLDVlpagplppNPSELLASKrlkqlLEELRGR-YDYVIIDTPpGLGVADATLLASLV--------DGVLLV 231
|
170 180 190
....*....|....*....|....*....|....*....
gi 557700200 222 VDA-MTGQNAVNTAEGFNEKLD--ITGVILTKLDGDTRG 257
Cdd:COG0489 232 VRPgKTALDDVRKALEMLEKAGvpVLGVVLNMVCPKGER 270
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
103-257 |
3.58e-03 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 38.87 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 103 IIMMSGLQGAGKTTTTGKLALKLkNEQKARPLLIAADVYRPAA--------IDQLVQ-----------VGQQIDVPVYQE 163
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARAL-ARRGLRVLLIDLDPQSNNSsveglegdIAPALQalaeglkgrvnLDPILLKEKSDE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700200 164 -GTDVNPVDIVRHGLE----------------QAAENKNDYVFIDTAGRLqidEKLMqeladIKALAHPDEILLVVDAmt 226
Cdd:pfam01656 80 gGLDLIPGNIDLEKFEkellgprkeerlrealEALKEDYDYVIIDGAPGL---GELL-----RNALIAADYVIIPLEP-- 149
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 557700200 227 GQNAVNTAEGFNE------------KLDITGVILTKLDGDTRG 257
Cdd:pfam01656 150 EVILVEDAKRLGGviaalvggyallGLKIIGVVLNKVDGDNHG 192
|
|
| |
