|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
99-402 |
9.87e-176 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 491.85 E-value: 9.87e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 99 ERYDRGLERSRKSFGQKLSALFTNFSGVDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDPDQISQLIVRRL 178
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 179 VALYtrngSAEDNHLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDV 258
Cdd:COG0552 83 LEIL----DPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 259 VAGKEQSDPASVAFEAVKKAKEENYDLLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQA 338
Cdd:COG0552 159 IAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQA 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 557700199 339 KAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLFKG 402
Cdd:COG0552 239 KVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
99-403 |
2.67e-175 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 491.54 E-value: 2.67e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 99 ERYDRGLERSRKSFGQKLSALFTnFSGVDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDPDQISQLIVRRL 178
Cdd:PRK10416 18 ERLKKGLSKTRENFGEGINGLFA-KKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 179 VALYTRngsaEDNHLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDV 258
Cdd:PRK10416 97 AEILEP----VEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 259 VAGKEQSDPASVAFEAVKKAKEENYDLLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQA 338
Cdd:PRK10416 173 IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 557700199 339 KAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLFKGL 403
Cdd:PRK10416 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGE 317
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
126-400 |
1.47e-134 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 386.61 E-value: 1.47e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 126 VDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDPDQISQLIVRRLVALYTRNGSAE-DNHLVFSKEGPTVFL 204
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtDLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 205 FVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKEENYD 284
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 285 LLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIV 364
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 557700199 365 LAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLF 400
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
201-399 |
5.02e-114 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 331.46 E-value: 5.02e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 201 TVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKE 280
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 281 ENYDLLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAK 360
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 557700199 361 GGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGL 399
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
200-401 |
6.04e-108 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 315.89 E-value: 6.04e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 200 PTVFLFVGVNGVGKTTSIGKMAARFKGRG-RKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKA 278
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 279 KEENYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGT 358
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 557700199 359 AKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLFK 401
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
201-399 |
7.15e-104 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 305.24 E-value: 7.15e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 201 TVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKE 280
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 281 ENYDLLLVDTAGRLQNKINLMNELDKIKRVIsreipdAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAK 360
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 557700199 361 GGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGL 399
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
99-402 |
9.87e-176 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 491.85 E-value: 9.87e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 99 ERYDRGLERSRKSFGQKLSALFTNFSGVDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDPDQISQLIVRRL 178
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 179 VALYtrngSAEDNHLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDV 258
Cdd:COG0552 83 LEIL----DPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 259 VAGKEQSDPASVAFEAVKKAKEENYDLLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQA 338
Cdd:COG0552 159 IAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQA 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 557700199 339 KAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLFKG 402
Cdd:COG0552 239 KVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
99-403 |
2.67e-175 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 491.54 E-value: 2.67e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 99 ERYDRGLERSRKSFGQKLSALFTnFSGVDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDPDQISQLIVRRL 178
Cdd:PRK10416 18 ERLKKGLSKTRENFGEGINGLFA-KKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 179 VALYTRngsaEDNHLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDV 258
Cdd:PRK10416 97 AEILEP----VEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 259 VAGKEQSDPASVAFEAVKKAKEENYDLLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQA 338
Cdd:PRK10416 173 IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 557700199 339 KAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLFKGL 403
Cdd:PRK10416 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGE 317
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
126-400 |
1.47e-134 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 386.61 E-value: 1.47e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 126 VDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDPDQISQLIVRRLVALYTRNGSAE-DNHLVFSKEGPTVFL 204
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtDLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 205 FVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKEENYD 284
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 285 LLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIV 364
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 557700199 365 LAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLF 400
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
201-399 |
5.02e-114 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 331.46 E-value: 5.02e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 201 TVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKE 280
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 281 ENYDLLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAK 360
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 557700199 361 GGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGL 399
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
200-401 |
6.04e-108 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 315.89 E-value: 6.04e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 200 PTVFLFVGVNGVGKTTSIGKMAARFKGRG-RKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKA 278
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 279 KEENYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGT 358
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 557700199 359 AKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLFK 401
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
201-399 |
7.15e-104 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 305.24 E-value: 7.15e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 201 TVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKE 280
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 281 ENYDLLLVDTAGRLQNKINLMNELDKIKRVIsreipdAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAK 360
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 557700199 361 GGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGL 399
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
111-397 |
4.75e-87 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 270.35 E-value: 4.75e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 111 SFGQKLSALFTNFSG---VDEDfydDLEET-------LIEADVGFDTALEISEEVRDEIEFEHVS---DPDQisQL--IV 175
Cdd:COG0541 4 NLSERLQGAFKKLRGkgrLTEE---NIKEAlrevrraLLEADVNLKVVKDFIERVKERALGEEVLkslTPGQ--QVikIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 176 RR-LVALYtrnGSAEDNhLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRD 254
Cdd:COG0541 79 HDeLVELL---GGENEE-LNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 255 GVDVVAGKEQSDPASVAFEAVKKAKEENYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNA 334
Cdd:COG0541 155 GVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDA 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 557700199 335 LTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVS 397
Cdd:COG0541 229 VNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMAS 291
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
70-400 |
1.49e-84 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 261.06 E-value: 1.49e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 70 TSSIEGASTSEVKTETQTSSAPDNGLDEAErydrglERSRKSFGQKLSAlfTNFSGVD-EDFYDDLEETLIEADVGFDTA 148
Cdd:PRK14974 13 VEKVEEKIEEEEEEEAPEAEEEEEEEDEEE------KKEKPGFFDKAKI--TEIKEKDiEDLLEELELELLESDVALEVA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 149 LEISEEVRDEIEFEHVSDPDQISQLIVRRLV-ALY---TRNGSAEDNHLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARF 224
Cdd:PRK14974 85 EEILESLKEKLVGKKVKRGEDVEEIVKNALKeALLevlSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 225 KGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKEENYDLLLVDTAGRLQNKINLMNEL 304
Cdd:PRK14974 165 KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDEL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 305 DKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETV 384
Cdd:PRK14974 245 KKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGY 318
|
330
....*....|....*.
gi 557700199 385 DDLSPFNPEQYVSGLF 400
Cdd:PRK14974 319 DDLIPFDPDWFVDKLL 334
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
202-399 |
4.14e-80 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 244.59 E-value: 4.14e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKEE 281
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 282 NYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKG 361
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVES------PDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 557700199 362 GIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGL 399
Cdd:cd03115 156 GAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
201-397 |
2.47e-72 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 224.79 E-value: 2.47e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 201 TVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKE 280
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 281 ENYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAK 360
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDAR 154
|
170 180 190
....*....|....*....|....*....|....*..
gi 557700199 361 GGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVS 397
Cdd:cd18539 155 GGAALSIRHVTGKPIKFIGVGEKIEDLEPFHPDRMAS 191
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
113-405 |
1.88e-70 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 228.17 E-value: 1.88e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 113 GQKLSALFTNFSG---VDE----DFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHV----SDPDQISQLIVRRLVAL 181
Cdd:PRK00771 2 GESLRDALKKLAGksrIDEktvkEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPpkglTPREHVIKIVYEELVKL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 182 YtrngsAEDNHLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAG 261
Cdd:PRK00771 82 L-----GEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 262 KEQSDPASVAFEAVKKAKeeNYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAF 341
Cdd:PRK00771 157 PDNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKAF 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 557700199 342 LETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVS-----GLFKGLME 405
Cdd:PRK00771 229 HEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISrllgmGDLESLLE 297
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
202-399 |
2.50e-60 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 193.95 E-value: 2.50e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKEE 281
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 282 NYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKG 361
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 557700199 362 GIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGL 399
Cdd:cd17875 156 GGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
121-405 |
3.63e-53 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 182.73 E-value: 3.63e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 121 TNFSGVDED----FYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDP----DQISQLIVRRLVALYTRNGSAednh 192
Cdd:TIGR01425 17 SSATVIDEEvintMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGinkrKLIQDAVFEELCNLVDPGVEA---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 193 LVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAF 272
Cdd:TIGR01425 93 FTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIAS 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 273 EAVKKAKEENYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIIL 352
Cdd:TIGR01425 173 EGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVII 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 557700199 353 TKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLF-----KGLME 405
Cdd:TIGR01425 247 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLgmgdlKGLID 304
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
202-399 |
1.15e-45 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 156.24 E-value: 1.15e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKEE 281
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 282 NYDLLLVDTAGRLQNKINLMNELDKIKRVisreipDAPQETLLVLDSTTGQNALTQAKAF----------LETTNVTGII 351
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKE------NNPDLVLFVGEALVGNDAVDQLKKFnqaladyspsDNPRLIDGIV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 557700199 352 LTKLDGTA-KGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGL 399
Cdd:cd17876 156 LTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
114-403 |
1.10e-41 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 150.40 E-value: 1.10e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 114 QKLSALFTNFSGVDEDFYDDLEETLIEADVGFDTALEISEEVRDEIefehvsDPDQISQLIVRRLvalyTRNGSAEDNHL 193
Cdd:COG1419 91 EEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDL------SAEEAWRALLEAL----ARRLPVAEDPL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 194 VfskEGPTVFLFVGVNGVGKTTSIGKMAARFKGRG-RKVLLAACDTFRAGAIQQLQEWGKRDGVDV-VAgkeqSDPASVA 271
Cdd:COG1419 161 L---DEGGVIALVGPTGVGKTTTIAKLAARFVLRGkKKVALITTDTYRIGAVEQLKTYARILGVPVeVA----YDPEELK 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 272 fEAVKKAKeeNYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTT-GQNALTQAKAFlETTNVTGI 350
Cdd:COG1419 234 -EALERLR--DKDLVLIDTAGRSPRDPELIEELKALLDAGP------PIEVYLVLSATTkYEDLKEIVEAF-SSLGLDGL 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 557700199 351 ILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETV-DDLSPFNPEQYVSGLFKGL 403
Cdd:COG1419 304 ILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLGGL 357
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
202-397 |
1.26e-34 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 126.51 E-value: 1.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAARFKGR-GRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEqsdpasvaFEAVKKAKE 280
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKkGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAED--------PEDLADALE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 281 E--NYDLLLVDTAGRLQNKINLMNELDKIKRVisreipDAPQETLLVLDSTT-GQNALTQAKAFlETTNVTGIILTKLDG 357
Cdd:cd17873 74 RlsDRDLILIDTAGRSPRDKEQLEELKELLGA------GEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDE 146
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 557700199 358 TAKGGIVLAIRNQLHLAVKYVGLGETV-DDLSPFNPEQYVS 397
Cdd:cd17873 147 TTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLAR 187
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
26-406 |
3.41e-30 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 120.38 E-value: 3.41e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 26 ESISATVNKDSSSETHSESQSTIASQAAVEKPVQAVGTNQIEEPTSSIEGASTSEVKTETQTSSAPDNGLDEAERYDRGL 105
Cdd:PRK05703 53 EDETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKEL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 106 ERSRKSFGQkLSALFTNFSGVD------EDFYDDLEETLIEADVGFDTALEISEEVRdeiefEHVSDPDQISQLIVRRLV 179
Cdd:PRK05703 133 DELRDELKE-LKNLLEDQLSGLrqveriPPEFAELYKRLKRSGLSPEIAEKLLKLLL-----EHMPPRERTAWRYLLELL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 180 A--LYTRNgsaEDnhlVFSKEGptVFLFVGVNGVGKTTSIGKMAARFKGR-GR-KVLLAACDTFRAGAIQQLQEWGKRDG 255
Cdd:PRK05703 207 AnmIPVRV---ED---ILKQGG--VVALVGPTGVGKTTTLAKLAARYALLyGKkKVALITLDTYRIGAVEQLKTYAKIMG 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 256 VDVvagkEQSDPAsvafEAVKKAKEE--NYDLLLVDTAGRLQNKINLMNELDKIKrvisrEIPDAPQETLLVLDSTTGQN 333
Cdd:PRK05703 279 IPV----EVVYDP----KELAKALEQlrDCDVILIDTAGRSQRDKRLIEELKALI-----EFSGEPIDVYLVLSATTKYE 345
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 557700199 334 ALTQA-KAFlETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETV-DDLSPFNPEQYVSGLFKGLMED 406
Cdd:PRK05703 346 DLKDIyKHF-SRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLGGFNKS 419
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
42-292 |
4.69e-23 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 97.79 E-value: 4.69e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 42 SESQSTIASQAAVEKPVQAVGTNQIEEPTSSIEGASTSEVKTETQTSSAPDNGLDEAERydRGLERSRKSfgqkLSALFT 121
Cdd:TIGR03499 52 EEEAAAASAEEEASKALEQADPKPLSATAEPLELPAPQEEPAAPAAQAAEPLLPEEELR--KELEALREL----LERLLA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 122 NFSGVDEDFY-DDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDpdQISQLIVRRLVALytrngsAEDNHLVfskEGP 200
Cdd:TIGR03499 126 GLAWLQRPPErAKLYERLLEAGVSEELARELLEKLPEDADAEDAWR--WLREALEGMLPVK------PEEDPIL---EQG 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 201 TVFLFVGVNGVGKTTSIGKMAARF--KGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKeqsDPASVAfEAVkkA 278
Cdd:TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFalEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVAR---DPKELR-EAL--D 268
|
250
....*....|....
gi 557700199 279 KEENYDLLLVDTAG 292
Cdd:TIGR03499 269 RLRDKDLILIDTAG 282
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
202-391 |
1.88e-17 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 83.86 E-value: 1.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAAR-FKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEqsdpasvafeaVKKAKE 280
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKyFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-----------IKKFKE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 281 ----ENYDLLLVDTAGRLQNKinlMNELDKIKRVISREIPDAPQETLLVLDSTTG-QNALTQAKAFlETTNVTGIILTKL 355
Cdd:PRK12724 294 tlarDGSELILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSyHHTLTVLKAY-ESLNYRRILLTKL 369
|
170 180 190
....*....|....*....|....*....|....*.
gi 557700199 356 DGTAKGGIVLAIRNQLHLAVKYVGLGETVddlsPFN 391
Cdd:PRK12724 370 DEADFLGSFLELADTYSKSFTYLSVGQEV----PFD 401
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
134-384 |
5.78e-17 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 81.87 E-value: 5.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 134 LEETLIEADVGFDTALEISEEVRDEIEFEHVSDPDQISQLIVRRLVALYTRNGSAEDNhlvfskEGPTVFLFVGVNGVGK 213
Cdd:PRK12723 114 IEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDN------LKKRVFILVGPTGVGK 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 214 TTSIGKMAARF----KGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVvagkeqsdpasVAFEAVKKAKEE-----NYD 284
Cdd:PRK12723 188 TTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-----------KAIESFKDLKEEitqskDFD 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 285 LLLVDTAGRlqNKINLMNeLDKIKRVISREIPDApqETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIV 364
Cdd:PRK12723 257 LVLVDTIGK--SPKDFMK-LAEMKELLNACGRDA--EFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNL 331
|
250 260
....*....|....*....|
gi 557700199 365 LAIRNQLHLAVKYVGLGETV 384
Cdd:PRK12723 332 ISLIYEMRKEVSYVTDGQIV 351
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
202-387 |
2.49e-16 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 80.80 E-value: 2.49e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAARFKGR--GRKVLLAACDTFRAGAIQQLQEWGKRDGVDVvagkEQSDPASVAFEAVKKAK 279
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQhaPRDVALVTTDTQRVGGREQLHSYGRQLGIAV----HEADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 280 EenYDLLLVDTAGRLQNKINLMNELDKIKrvISREIpdapqETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTA 359
Cdd:PRK12727 428 D--YKLVLIDTAGMGQRDRALAAQLNWLR--AARQV-----TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETG 498
|
170 180
....*....|....*....|....*....
gi 557700199 360 KGGIVLAIRNQLHLAVKYVGLGETV-DDL 387
Cdd:PRK12727 499 RFGSALSVVVDHQMPITWVTDGQRVpDDL 527
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
158-367 |
2.52e-16 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 80.11 E-value: 2.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 158 EIEFEH---VSDPDQISQLIVRRLVALYTRNgsaednhlVFSKEGPTVFLfVGVNGVGKTTSIGKMAARFKGRGRKVLLA 234
Cdd:PRK11889 205 KVKFENatmITEEEVIEYILEDMRSHFNTEN--------VFEKEVQTIAL-IGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 235 ACDTFRAGAIQQLQEWGKRDGVDVVAGKeqsDPASVAfEAVKKAKEE-NYDLLLVDTAGRLQNKINLMNEL-DKIKRVis 312
Cdd:PRK11889 276 TTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMT-RALTYFKEEaRVDYILIDTAGKNYRASETVEEMiETMGQV-- 349
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 557700199 313 reipdAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAI 367
Cdd:PRK11889 350 -----EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKI 399
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
202-396 |
1.52e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 75.61 E-value: 1.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAARFKGR-GR-KVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDpASVAFEAVKKAK 279
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAReGAdQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAALGDKH 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 280 eenydLLLVDTAGrlqnkinlMNELDkikRVISREIP-----DAPQETLLVLDSTTGQNALTQ-AKAFLETT--NVTGII 351
Cdd:PRK14723 266 -----LVLIDTVG--------MSQRD---RNVSEQIAmlcgvGRPVRRLLLLNAASHGDTLNEvVHAYRHGAgeDVDGCI 329
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 557700199 352 LTKLDGTAKGGIVL--AIRNQlhLAVKYVGLGETV-DDLSPFNPEQYV 396
Cdd:PRK14723 330 ITKLDEATHLGPALdtVIRHR--LPVHYVSTGQKVpEHLELAQADELV 375
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
194-367 |
3.47e-14 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 72.09 E-value: 3.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 194 VFSKEGPTVFLfVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKeqsDPASVAFE 273
Cdd:PRK06731 70 VFEKEVQTIAL-IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 274 AVKKAKEENYDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILT 353
Cdd:PRK06731 146 LTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 219
|
170
....*....|....
gi 557700199 354 KLDGTAKGGIVLAI 367
Cdd:PRK06731 220 KFDETASSGELLKI 233
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
202-386 |
1.00e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 72.06 E-value: 1.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAARFKGR--GRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDpasvafEAVKKAK 279
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD------LQLALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 280 EENYDLLLVDTAGrlqnkinlMNELDkikRVISREI-----PDAPQETLLVLDSTTGQNALT-----------QAKAFLe 343
Cdd:PRK14722 213 LRNKHMVLIDTIG--------MSQRD---RTVSDQIamlhgADTPVQRLLLLNATSHGDTLNevvqayrsaagQPKAAL- 280
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 557700199 344 tTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDD 386
Cdd:PRK14722 281 -PDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
175-401 |
1.03e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 72.29 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 175 VRRLVALYTRNGSAEDNHLVFSKEGptVFLFVGVNGVGKTTSIGKMAARFKGR--GRKVLLAACDTFRAGAIQQLQEWGK 252
Cdd:PRK14721 168 LKKTISLLTLNLRTIGGDEIIEQGG--VYALIGPTGVGKTTTTAKLAARAVIRhgADKVALLTTDSYRIGGHEQLRIYGK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 253 RDGVDVVAGKEQSDpASVAFEAVKKAKeenydLLLVDTAGRLQNKINLMNEL-------DKIKRvisreipdapqetLLV 325
Cdd:PRK14721 246 LLGVSVRSIKDIAD-LQLMLHELRGKH-----MVLIDTVGMSQRDQMLAEQIamlsqcgTQVKH-------------LLL 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 557700199 326 LDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVL--AIRNQLHLavKYVGLGETV-DDLSPFNPEQYVSGLFK 401
Cdd:PRK14721 307 LNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALdaVIRRKLVL--HYVTNGQKVpEDLHEANSRYLLHRIFK 383
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
109-182 |
1.46e-12 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 62.57 E-value: 1.46e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 557700199 109 RKSFGQKLSALFTNFSgVDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEH---VSDPDQISQLIVRRLVALY 182
Cdd:smart00963 2 SKALGKLLGELFLTEK-DDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEVlkgLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
202-384 |
2.32e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 68.45 E-value: 2.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 202 VFLFVGVNGVGKTTSIGKMAARFKGR--GRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDpasvafeaVKKAK 279
Cdd:PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRhgASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD--------LRLAL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 280 EE--NYDLLLVDTAGrlqnkinlMNELDkikRVISREIP-----DAPQETLLVLDSTTGQNALTQ-AKAFlETTNVTGII 351
Cdd:PRK06995 330 SElrNKHIVLIDTIG--------MSQRD---RMVSEQIAmlhgaGAPVKRLLLLNATSHGDTLNEvVQAY-RGPGLAGCI 397
|
170 180 190
....*....|....*....|....*....|....*
gi 557700199 352 LTKLDGTAKGGIVL--AIRNQLHLavKYVGLGETV 384
Cdd:PRK06995 398 LTKLDEAASLGGALdvVIRYKLPL--HYVSNGQRV 430
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
200-325 |
6.35e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.16 E-value: 6.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 200 PTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEwgkrdgVDVVAGKEQSDPASVAFEAVKKAK 279
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL------IIVGGKKASGSGELRLRLALALAR 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 557700199 280 EENYDLLLVDTAGRLQNKINLMNELDKIKRVISREIPDAPQETLLV 325
Cdd:smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
112-178 |
8.39e-12 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 60.56 E-value: 8.39e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 557700199 112 FGQKLSALFTNFSG---VDEDFYDD----LEETLIEADVGFDTALEISEEVRD-EIEFEHVSDPDQISQLIVRRL 178
Cdd:pfam02881 1 LGEKLSSLFKGLRGkgkIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREkAVGEKKLKPPQEVKKILKEEL 75
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
195-393 |
4.88e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 60.91 E-value: 4.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 195 FSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGkeqSDPASVAfEA 274
Cdd:PRK12726 201 FDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAELE-EA 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557700199 275 VKKAKEEN-YDLLLVDTAGRLQNKINLMNELDKIKRVISreipdaPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILT 353
Cdd:PRK12726 277 VQYMTYVNcVDHILIDTVGRNYLAEESVSEISAYTDVVH------PDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIIT 350
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 557700199 354 KLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDlSPFNPE 393
Cdd:PRK12726 351 KMDETTRIGDLYTVMQETNLPVLYMTDGQNITE-NIFRPK 389
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
202-237 |
4.48e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 36.64 E-value: 4.48e-03
10 20 30
....*....|....*....|....*....|....*..
gi 557700199 202 VFLFVG-VNGVGKTTSIGKMAARFKGRGRKVLLAACD 237
Cdd:cd01983 2 VIAVTGgKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
|
|
| PRK13230 |
PRK13230 |
nitrogenase reductase-like protein; Reviewed |
203-237 |
9.56e-03 |
|
nitrogenase reductase-like protein; Reviewed
Pssm-ID: 183903 Cd Length: 279 Bit Score: 37.44 E-value: 9.56e-03
10 20 30
....*....|....*....|....*....|....*
gi 557700199 203 FLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACD 237
Cdd:PRK13230 4 FCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38
|
|
| |
