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Conserved domains on  [gi|556995117|ref|XP_006001417|]
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spindlin-Z isoform X1 [Latimeria chalumnae]

Protein Classification

Spin-Ssty domain-containing protein( domain architecture ID 10494821)

Spin-Ssty domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 83-131 9.93e-28

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


:

Pssm-ID: 460577  Cd Length: 49  Bit Score: 101.59  E-value: 9.93e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117   83 VGCRIQHGWKEGSGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLEL 131
Cdd:pfam02513   1 VGKRVEHTWEDGNGSKSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 162-210 2.10e-23

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


:

Pssm-ID: 460577  Cd Length: 49  Bit Score: 90.03  E-value: 2.10e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117  162 IGKAVEHMFETEDGSKDEWRGMVLARAPIMNTWFFITYEKDPVLYMYQL 210
Cdd:pfam02513   1 VGKRVEHTWEDGNGSKSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 243-287 1.06e-19

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


:

Pssm-ID: 460577  Cd Length: 49  Bit Score: 80.40  E-value: 1.06e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117  243 VGKQVEYAKEDG----SKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDL 287
Cdd:pfam02513   1 VGKRVEHTWEDGngskSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
 
Name Accession Description Interval E-value
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 83-131 9.93e-28

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


Pssm-ID: 460577  Cd Length: 49  Bit Score: 101.59  E-value: 9.93e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117   83 VGCRIQHGWKEGSGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLEL 131
Cdd:pfam02513   1 VGKRVEHTWEDGNGSKSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 162-210 2.10e-23

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


Pssm-ID: 460577  Cd Length: 49  Bit Score: 90.03  E-value: 2.10e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117  162 IGKAVEHMFETEDGSKDEWRGMVLARAPIMNTWFFITYEKDPVLYMYQL 210
Cdd:pfam02513   1 VGKRVEHTWEDGNGSKSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 243-287 1.06e-19

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


Pssm-ID: 460577  Cd Length: 49  Bit Score: 80.40  E-value: 1.06e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117  243 VGKQVEYAKEDG----SKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDL 287
Cdd:pfam02513   1 VGKRVEHTWEDGngskSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
 
Name Accession Description Interval E-value
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 83-131 9.93e-28

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


Pssm-ID: 460577  Cd Length: 49  Bit Score: 101.59  E-value: 9.93e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117   83 VGCRIQHGWKEGSGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLEL 131
Cdd:pfam02513   1 VGKRVEHTWEDGNGSKSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 162-210 2.10e-23

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


Pssm-ID: 460577  Cd Length: 49  Bit Score: 90.03  E-value: 2.10e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117  162 IGKAVEHMFETEDGSKDEWRGMVLARAPIMNTWFFITYEKDPVLYMYQL 210
Cdd:pfam02513   1 VGKRVEHTWEDGNGSKSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
Spin-Ssty pfam02513
Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized ...
 243-287 1.06e-19

Spin/Ssty Family; Spindlin (Spin) is a novel maternal transcript present in the unfertilized egg and early embryo. The Y-linked spermiogenesis -specific transcript (Ssty) is also expressed during gametogenesis and forms part of this Pfam family. Members of this family contain three copies of this 50 residue repeat. The repeat is predicted to contain four beta strands.


Pssm-ID: 460577  Cd Length: 49  Bit Score: 80.40  E-value: 1.06e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 556995117  243 VGKQVEYAKEDG----SKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDL 287
Cdd:pfam02513   1 VGKRVEHTWEDGngskSQWKGTVLYQVPVNPSLYFIKYDGDDHIYVYEL 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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