|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
2-424 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 717.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 2 AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIGHEIIDTLDPTKQILKIVNE 81
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 82 ELTSILGSETAEIDKSPKIPTIIMMVGLQGAGKTTFAGKLANKLiKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF 161
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYL-KKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 162 DMGTDHSAVDIVRKGLEQARENHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQL 241
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 242 SITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMSSRILGMGDLLTLIEKASQEYDEKKSLELA 321
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 322 EKMRENTFDFNDFIEQLDQVQNMGPMEDLLKMIPGMAGNPALANIKVDENQIARKRAIVSSMTPAERENPDLLNPSRRRR 401
Cdd:COG0541 320 KKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKRR 399
|
410 420
....*....|....*....|...
gi 553319361 402 IAAGSGNSFVEVNKFIKDFNQAK 424
Cdd:COG0541 400 IAKGSGTTVQDVNRLLKQFEQMK 422
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
3-429 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 658.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 3 FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIGHEIIDTLDPTKQILKIVNEE 82
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 83 LTSILGSETAEIDKSPKIPTIIMMVGLQGAGKTTFAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFD 162
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 163 MGTDHSAVDIVRKGLEQARENHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLS 242
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 243 ITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMSSRILGMGDLLTLIEKASQEYDEKKSLELAE 322
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 323 KMRENTFDFNDFIEQLDQVQNMGPMEDLLKMIPGMAGN-PALANIKVDENQIARKRAIVSSMTPAERENPDLLNPSRRRR 401
Cdd:TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVkPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400
|
410 420
....*....|....*....|....*...
gi 553319361 402 IAAGSGNSFVEVNKFIKDFNQAKSMMQG 429
Cdd:TIGR00959 401 IAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-444 |
1.52e-161 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 465.84 E-value: 1.52e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 6 LTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIGHEIIDTLDPTKQILKIVNEELTS 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 86 ILGSETaEIDKSPKIPTIIMMVGLQGAGKTTFAGKLANKLIKEeDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGT 165
Cdd:PRK00771 81 LLGEET-EPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 166 DHSAVDIVRKGLEQARENhnDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITG 245
Cdd:PRK00771 159 NKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 246 VVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMSSRILGMGDLLTLIEKASQEYDEKKSLELAEKMR 325
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 326 ENTFDFNDFIEQLDQVQNMGPMEDLLKMIPGMAGNPALANIKVDENQIARKRAIVSSMTPAERENPDLLNPSRRRRIAAG 405
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRIARG 396
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 553319361 406 SGNSFVEVNKFIKDFNQAKSMMQGV--MSGDMSKMMKDMGI 444
Cdd:PRK00771 397 SGTTVEDVRELLKYYKMMKKAMKQLkkGKGKMGKLMKQFGF 437
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-295 |
1.84e-110 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 326.09 E-value: 1.84e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 102 TIIMMVGLQGAGKTTFAGKLAnKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQAR 181
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLA-LYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 182 ENHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRGGAAL 261
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 553319361 262 SVREITGKPIKFTGTGERITDIETFHPDRMSSRI 295
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
101-297 |
2.42e-102 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 305.49 E-value: 2.42e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 181 RENHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRGGAA 260
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 553319361 261 LSVREITGKPIKFTGTGERITDIETFHPDRMSSRILG 297
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-295 |
4.47e-96 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 289.44 E-value: 4.47e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 102 TIIMMVGLQGAGKTTFAGKLANKLiKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQAR 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYL-KKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 182 ENHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRGGAAL 261
Cdd:pfam00448 80 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 553319361 262 SVREITGKPIKFTGTGERITDIETFHPDRMSSRI 295
Cdd:pfam00448 160 SIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
4-297 |
9.03e-82 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 256.49 E-value: 9.03e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 4 ESLTQRLQDVFKhirGKKKLSESDVQEvtkeIRLALLEADVALPVVKTFIKRVRERAIGHEIIDTldptKQILKIVNEEL 83
Cdd:COG0552 14 SGLGEKLKSLFS---GKKKIDEDLLEE----LEELLIEADVGVETTEEIIEELRERVKRKKLKDP----EELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 84 TSILGSETAEIDKSPKIPTIIMMVGLQGAGKTTFAGKLANKLiKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF-- 161
Cdd:COG0552 83 LEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRL-KAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIaq 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 162 DMGTDHSAVdiVRKGLEQARENHNDYVLIDTAGRLQIDEKLMEELRDVK------ALAQPNEILLVVDSMIGQEAANVAY 235
Cdd:COG0552 162 KEGADPAAV--AFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKrvikklDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 553319361 236 EFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMSSRILG 297
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
6-426 |
4.63e-78 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 251.29 E-value: 4.63e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 6 LTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIGHEIIDTLDPTKQILKIVNEELTS 85
Cdd:TIGR01425 5 LGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 86 ILGSETAEIDKSPKIPTIIMMVGLQGAGKTTFAGKLAnKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGT 165
Cdd:TIGR01425 85 LVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLA-YYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 166 DHSAVDIVRKGLEQARENHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITG 245
Cdd:TIGR01425 164 ESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVGS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 246 VVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMSSRILGMGDLLTLIEKASQEYDEKKSLELAEKMR 325
Cdd:TIGR01425 244 VIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHLK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 326 ENTFDFNDFIEQLDQVQNMGPMEDLLKMIPGMAGN-PALANIKVDENQIARKRAIVSSMTPAERENPDLL---NPSRRRR 401
Cdd:TIGR01425 324 EGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPmMSKGNEEETSAKIKVFMTIMDSMTDRELDSTAKTmlkDPSRIRR 403
|
410 420
....*....|....*....|....*
gi 553319361 402 IAAGSGNSFVEVNKFIKDFNQAKSM 426
Cdd:TIGR01425 404 VARGSGRDIREVNELLEQYKLFAQM 428
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
103-295 |
2.59e-77 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 241.12 E-value: 2.59e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 103 IIMMVGLQGAGKTTFAGKLAnKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQARE 182
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLA-RYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 183 NHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRGGAALS 262
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 553319361 263 VREITGKPIKFTGTGERITDIETFHPDRMSSRI 295
Cdd:cd03115 161 IVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-297 |
2.14e-68 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 222.93 E-value: 2.14e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 21 KKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIGHEIIDTLDPTKQILKIVNEELTSILGS----ETAEIDK 96
Cdd:PRK14974 56 TEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVgdlfDLIEEIK 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 97 SPKIPTIIMMVGLQGAGKTTFAGKLANKLiKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVdiVR 174
Cdd:PRK14974 136 SKGKPVVIVFVGVNGTGKTTTIAKLAYYL-KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIkhKYGADPAAV--AY 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 175 KGLEQARENHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGD 254
Cdd:PRK14974 213 DAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDAD 292
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 553319361 255 TRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMSSRILG 297
Cdd:PRK14974 293 AKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
4-297 |
1.21e-66 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 218.04 E-value: 1.21e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 4 ESLTQRLQDVFkhirGKKKLSESDVQEVtKEIrlaLLEADVALPVVKTFIKRVRERAIGHEIIDTLDpTKQILKivnEEL 83
Cdd:PRK10416 29 ENFGEGINGLF----AKKKIDEDLLEEL-EEL---LIEADVGVETTEEIIEELRERVKRKNLKDPEE-LKELLK---EEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 84 TSILGSETAEIDKSPKIPTIIMMVGLQGAGKTTFAGKLANKLiKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF-- 161
Cdd:PRK10416 97 AEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKY-KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIaq 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 162 DMGTDHSAVdiVRKGLEQARENHNDYVLIDTAGRLQIDEKLMEELRDV-----KAL-AQPNEILLVVDSMIGQEAANVAY 235
Cdd:PRK10416 176 KEGADPASV--AFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIkrvikKADpDAPHEVLLVLDATTGQNALSQAK 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 553319361 236 EFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMSSRILG 297
Cdd:PRK10416 254 AFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
27-296 |
2.31e-66 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 215.97 E-value: 2.31e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 27 DVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIGHEIIDTLDPTKQILKIVNEELTSILGSET-AEIDKSPKIPTIIM 105
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTdLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 106 MVGLQGAGKTTFAGKLANKLIKEeDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVdiVRKGLEQAREN 183
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIkqKEGADPAAV--AFDAIQKAKAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 184 HNDYVLIDTAGRLQIDEKLMEELRDVKALAQ------PNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRG 257
Cdd:TIGR00064 159 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKG 238
|
250 260 270
....*....|....*....|....*....|....*....
gi 553319361 258 GAALSVREITGKPIKFTGTGERITDIETFHPDRMSSRIL 296
Cdd:TIGR00064 239 GIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
103-295 |
1.39e-64 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 208.20 E-value: 1.39e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 103 IIMMVGLQGAGKTTFAGKLANkLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQARE 182
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAY-YYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 183 NHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRGGAALS 262
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 553319361 263 VREITGKPIKFTGTGERITDIETFHPDRMSSRI 295
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
102-289 |
2.92e-59 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 194.33 E-value: 2.92e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 102 TIIMMVGLQGAGKTTFAGKLANKLiKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVdiVRKGLEQ 179
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYL-KNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVIsqNEGADPAAV--AFDAIQA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 180 ARENHNDYVLIDTAGRLQIDEKLMEELRDVK------ALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDG 253
Cdd:cd17874 78 AKARGIDVVLIDTAGRLHTKKNLMEELKKIKrvikkkDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDG 157
|
170 180 190
....*....|....*....|....*....|....*.
gi 553319361 254 DTRGGAALSVREITGKPIKFTGTGERITDIETFHPD 289
Cdd:cd17874 158 TAKGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPE 193
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
8-297 |
8.68e-39 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 145.01 E-value: 8.68e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 8 QRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAigheiidtldPTKQILKIVNEELTSIL 87
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEALARRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 88 GSETAEIDKSPKIptiIMMVGLQGAGKTTFAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVfdmgtdH 167
Cdd:COG1419 154 PVAEDPLLDEGGV---IALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTYARILGVPV------E 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 168 SAVDivRKGLEQARENHNDY--VLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVD-SMIGQEAANVAYEFNHqLSIT 244
Cdd:COG1419 225 VAYD--PEELKEALERLRDKdlVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSaTTKYEDLKEIVEAFSS-LGLD 301
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 553319361 245 GVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERIT-DIETFHPDRMSSRILG 297
Cdd:COG1419 302 GLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVPeDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
104-289 |
1.06e-37 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 137.36 E-value: 1.06e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 104 IMMVGLQGAGKTTFAGKLANKLiKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQAREN 183
Cdd:cd17876 3 IVFCGVNGVGKSTNLAKIAYWL-LSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 184 HNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLS----------ITGVVLTKIDG 253
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALAdyspsdnprlIDGIVLTKFDT 161
|
170 180 190
....*....|....*....|....*....|....*..
gi 553319361 254 -DTRGGAALSVREITGKPIKFTGTGERITDIETFHPD 289
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVK 198
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
328-424 |
1.26e-35 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 127.90 E-value: 1.26e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 328 TFDFNDFIEQLDQVQNMGPMEDLLKMIPGMAGNPALANikvDENQIARKRAIVSSMTPAERENPDLLNPSRRRRIAAGSG 407
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDID---SEKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSG 77
|
90
....*....|....*..
gi 553319361 408 NSFVEVNKFIKDFNQAK 424
Cdd:pfam02978 78 TSVQEVNRLLKQFKQMK 94
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
103-295 |
4.20e-30 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 116.11 E-value: 4.20e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 103 IIMMVGLQGAGKTTFAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPvfdmgtdhsaVDIVR--KGLEQA 180
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGIP----------VEVAEdpEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 181 RENH--NDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDS-MIGQEAANVAYEFNHqLSITGVVLTKIDGDTRG 257
Cdd:cd17873 72 LERLsdRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSAtTKAKDLKEIIERFSP-LGYRGLILTKLDETTSL 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 553319361 258 GAALSVREITGKPIKFTGTGERI-TDIETFHPDRMSSRI 295
Cdd:cd17873 151 GSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
10-297 |
2.03e-25 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 108.44 E-value: 2.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 10 LQDVFKHIRGKKKLSESDVQEVtKEIRLALLEADVALPVVKTFIKRVRERAIGHEiidtldptKQILKIVNEELTSILGS 89
Cdd:PRK05703 142 LKNLLEDQLSGLRQVERIPPEF-AELYKRLKRSGLSPEIAEKLLKLLLEHMPPRE--------RTAWRYLLELLANMIPV 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 90 ETAEIDKSPKIptiIMMVGLQGAGKTTFAGKLANKLIKEEDARPL-MIAADIYRPAAIDQLKTLGQQINVPVfdmgtdHS 168
Cdd:PRK05703 213 RVEDILKQGGV---VALVGPTGVGKTTTLAKLAARYALLYGKKKVaLITLDTYRIGAVEQLKTYAKIMGIPV------EV 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 169 AVDIvrKGLEQARENHN--DYVLIDTAGRLQIDEKLMEELRD-VKALAQPNEILLVVdSMIGQ-EAANVAYE-FNHqLSI 243
Cdd:PRK05703 284 VYDP--KELAKALEQLRdcDVILIDTAGRSQRDKRLIEELKAlIEFSGEPIDVYLVL-SATTKyEDLKDIYKhFSR-LPL 359
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 553319361 244 TGVVLTKIDgDTRG-GAALSVREITGKPIKFTGTGERI-TDIETFHPDRMSSRILG 297
Cdd:PRK05703 360 DGLIFTKLD-ETSSlGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
3.26e-21 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 87.52 E-value: 3.26e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 553319361 6 LTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIGHEiidTLDPTKQILKIVNEEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEK---KLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
6.18e-19 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 81.06 E-value: 6.18e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 553319361 10 LQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIGhEIIDTLDPTKQILKIVNEELTSIL 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
34-194 |
3.64e-16 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 78.92 E-value: 3.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 34 EIRLALLEADVALPVVKTFIKRVRERAIGHEIIDTLdptkqilkivNEELTSILGSETAEIDKSPKiPTIIMMVGLQGAG 113
Cdd:TIGR03499 138 KLYERLLEAGVSEELARELLEKLPEDADAEDAWRWL----------REALEGMLPVKPEEDPILEQ-GGVIALVGPTGVG 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 114 KTTFAGKLANKLIKEEDARPL-MIAADIYRPAAIDQLKTLGQQINVPVfdmgtdHSAVDIvrKGLEQA--RENHNDYVLI 190
Cdd:TIGR03499 207 KTTTLAKLAARFALEHGKKKVaLITTDTYRIGAVEQLKTYAEILGIPV------KVARDP--KELREAldRLRDKDLILI 278
|
....
gi 553319361 191 DTAG 194
Cdd:TIGR03499 279 DTAG 282
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
103-301 |
4.16e-16 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 81.19 E-value: 4.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 103 IIMMVGLQGAGKTTFAGKLANKLIKEEDARPL-MIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSavdivrkgLEQAR 181
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVaLVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES--------LLDLL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 182 ENHNDY--VLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQlSITGVVLTKIDGDTRGGA 259
Cdd:PRK12727 424 ERLRDYklVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHA-KPQGVVLTKLDETGRFGS 502
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 553319361 260 ALSVREITGKPIKFTGTGERITDieTFHPDRMSSRILGMGDL 301
Cdd:PRK12727 503 ALSVVVDHQMPITWVTDGQRVPD--DLHRANAASLVLRLEDL 542
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
106-280 |
6.77e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 64.82 E-value: 6.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 106 MVGLQGAGKTTFAGKLANKLIKEEDARPL-MIAADIYRPAAIDQLKTLGQQINVPVfdmgtdHSAVDI--VRKGLEQARE 182
Cdd:PRK14723 190 LVGPTGVGKTTTTAKLAARCVAREGADQLaLLTTDSFRIGALEQLRIYGRILGVPV------HAVKDAadLRFALAALGD 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 183 NHndYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQEAAN-VAYEFNHQLS--ITGVVLTKIDGDTRGGA 259
Cdd:PRK14723 264 KH--LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYRHGAGedVDGCIITKLDEATHLGP 341
|
170 180
....*....|....*....|.
gi 553319361 260 ALSVREITGKPIKFTGTGERI 280
Cdd:PRK14723 342 ALDTVIRHRLPVHYVSTGQKV 362
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
103-280 |
2.66e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 59.21 E-value: 2.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 103 IIMMVGLQGAGKTTFAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFdmgtdhsAVDIVRKGLEQARE 182
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-------PVKDIKKFKETLAR 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 183 NHNDYVLIDTAG----RLQIDEKlMEELRDVKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRGG 258
Cdd:PRK12724 298 DGSELILIDTAGyshrNLEQLER-MQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376
|
170 180
....*....|....*....|..
gi 553319361 259 AALSVREITGKPIKFTGTGERI 280
Cdd:PRK12724 377 SFLELADTYSKSFTYLSVGQEV 398
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
103-297 |
2.70e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 58.98 E-value: 2.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 103 IIMMVGLQGAGKTTFAGKLANKLIKEEDARPLmIAADIYRPAAIDQLKTLGQQINVPVFdmgtdhsaVDIVRKGLEQARE 182
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGF-ITTDTFRSGAVEQFQGYADKLDVELI--------VATSPAELEEAVQ 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 183 -----NHNDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSmiGQEAANVAYEFNH--QLSITGVVLTKIDGDT 255
Cdd:PRK12726 279 ymtyvNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSS--GMKSADVMTILPKlaEIPIDGFIITKMDETT 356
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 553319361 256 RGGAALSVREITGKPIKFTGTGERITDiETFHPDR--MSSRILG 297
Cdd:PRK12726 357 RIGDLYTVMQETNLPVLYMTDGQNITE-NIFRPKSrwLAERFVG 399
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
67-282 |
6.89e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 57.81 E-value: 6.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 67 DTLDPTKQILKIVNEELTSILGSETAEIDKSpkipTIIMMVGLQGAGKTTFAGKLANKLIKEEDARPL-MIAADIYRPAA 145
Cdd:PRK14722 107 DTLDAAADWAQSVLAANLPVLDSEDALMERG----GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVaLLTTDSYRIGG 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 146 IDQLKTLGQQINVPVfdmgtdHSAVD--IVRKGLEQARENHndYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVD 223
Cdd:PRK14722 183 HEQLRIFGKILGVPV------HAVKDggDLQLALAELRNKH--MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLN 254
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 553319361 224 SMIGQEAANVAYEFNHQLS---------ITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITD 282
Cdd:PRK14722 255 ATSHGDTLNEVVQAYRSAAgqpkaalpdLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
20-280 |
1.37e-08 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 55.91 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 20 KKKLSESDVQEVTKEIRLaLLEADVALPVVKTFIKRVRERAIGHEIIdtldpTKQILKIVNEELTSILGSETAeidkSPK 99
Cdd:PRK06731 4 KKEKQESVPFIIQKVIRM-LEQNDVEQYFIHAYAEKLKVKFENATMI-----TEEVIEYILEDMSSHFNTENV----FEK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 100 IPTIIMMVGLQGAGKTTFAGKLANKLIKEEDARPLmIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQ 179
Cdd:PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF-ITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 180 AREnhnDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVD-SMIGQEAANVAYEFNhQLSITGVVLTKIDGDTRGG 258
Cdd:PRK06731 153 ARV---DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSaSMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSG 228
|
250 260
....*....|....*....|..
gi 553319361 259 AALSVREITGKPIKFTGTGERI 280
Cdd:PRK06731 229 ELLKIPAVSSAPIVLMTDGQDV 250
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
101-207 |
1.65e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.53 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEEdARPLMIAADIYRPAAIDQLktlgqqINVPVFDMGTDHSAVDIVRKGLEQA 180
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQL------LLIIVGGKKASGSGELRLRLALALA 74
|
90 100
....*....|....*....|....*..
gi 553319361 181 RENHNDYVLIDTAGRLQIDEKLMEELR 207
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLL 101
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
104-280 |
2.66e-08 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 56.23 E-value: 2.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 104 IMMVGLQGAGKTTFAGKLANKLIKEEDARPLmIAADIYRPAAIDQL----KTLGQQInVPVFDMGTDHSAVDIVRkglEQ 179
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGF-ITTDHSRIGTVQQLqdyvKTIGFEV-IAVRDEAAMTRALTYFK---EE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 180 AREnhnDYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVD-SMIGQEAANVAYEFNhQLSITGVVLTKIDGDTRGG 258
Cdd:PRK11889 319 ARV---DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSaSMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSG 394
|
170 180
....*....|....*....|..
gi 553319361 259 AALSVREITGKPIKFTGTGERI 280
Cdd:PRK11889 395 ELLKIPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
73-263 |
9.28e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 54.19 E-value: 9.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 73 KQILKIVNEELTSILGSETAEIDKspkiptIIMMVGLQGAGKTTFAGKLANKLIKEEDARPL-MIAADIYRPAAIDQLKT 151
Cdd:PRK14721 169 KKTISLLTLNLRTIGGDEIIEQGG------VYALIGPTGVGKTTTTAKLAARAVIRHGADKVaLLTTDSYRIGGHEQLRI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 152 LGQQINVPVfdmgtdHSAVDI--VRKGLEQARENHNdyVLIDTAGRLQIDEKLMEELRDVKALAQPNEILLVVDSMIGQE 229
Cdd:PRK14721 243 YGKLLGVSV------RSIKDIadLQLMLHELRGKHM--VLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD 314
|
170 180 190
....*....|....*....|....*....|....
gi 553319361 230 AANVAYEFNHQLSITGVVLTKIDGDTRGGAALSV 263
Cdd:PRK14721 315 TLDEVISAYQGHGIHGCIITKVDEAASLGIALDA 348
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
10-312 |
8.50e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 51.06 E-value: 8.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 10 LQDVFKHIRGKKKLSESDVQEVT----KEIRLALLEADVAlpvvKTFIKRVRERAIGHEIIDTLDPTKQILKIVNEELTS 85
Cdd:PRK12723 85 IEDVLKEVKSLKNELAHKKEEINhptiLKIEDILRENDFS----ESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAK 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 86 ILGSETAEIDKSPkiPTIIMMVGLQGAGKTTFAGKLA-----NKLIKEEDARplMIAADIYRPAAIDQLKTLGQQINVPV 160
Cdd:PRK12723 161 TIKCSGSIIDNLK--KRVFILVGPTGVGKTTTIAKLAaiygiNSDDKSLNIK--IITIDNYRIGAKKQIQTYGDIMGIPV 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 161 fdmgtdhSAVDIVRKGLEQARENHN-DYVLIDTAGRLQIDEKLMEELRD-VKALAQPNEILLVVDSMigQEAANVAyEFN 238
Cdd:PRK12723 237 -------KAIESFKDLKEEITQSKDfDLVLVDTIGKSPKDFMKLAEMKElLNACGRDAEFHLAVSST--TKTSDVK-EIF 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 239 HQLSITG---VVLTKIDGDTRGGAALSVREITGKPIKFTGTGERIT-DIETFHPDRMSSRILG--MGDLLTLIEK-ASQE 311
Cdd:PRK12723 307 HQFSPFSyktVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPhNISIAEPLTFIKKINGyrISDDAEFIRKlKSKS 386
|
.
gi 553319361 312 Y 312
Cdd:PRK12723 387 Y 387
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
103-250 |
1.45e-06 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 47.04 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 103 IIMMVGLQ-GAGKTTFAGKLANKLikeedarplmiAADIYRPAAIDqlktlgqqinvpvfdmgtdhsavdivrkgleqar 181
Cdd:cd01983 2 VIAVTGGKgGVGKTTLAAALAVAL-----------AAKGYKVLLID---------------------------------- 36
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 553319361 182 enHNDYVLIDTAGRLQIDEKLMEELRdVKALAQPNEILLVVDSMIG--QEAANVAYEFNHQ---LSITGVVLTK 250
Cdd:cd01983 37 --LDDYVLIDGGGGLETGLLLGTIVA-LLALKKADEVIVVVDPELGslLEAVKLLLALLLLgigIRPDGIVLNK 107
|
|
| Ras_like_GTPase |
cd00882 |
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ... |
107-252 |
2.93e-04 |
|
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.
Pssm-ID: 206648 [Multi-domain] Cd Length: 161 Bit Score: 41.67 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 107 VGLQGAGKTTFAGKLANKLIKEEDARPlmiaadiyrpaaidqlktlgqqinvpvfdmgtdHSAVDIVRKGLEQARENHNd 186
Cdd:cd00882 3 VGRGGVGKSSLLNALLGGEVGEVSDVP---------------------------------GTTRDPDVYVKELDKGKVK- 48
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 187 YVLIDTAGRLQIDEKLMEELRDvKALAQPNEILLVVDSMIGQEAANVAYEFNHQLSITG----VVLTKID 252
Cdd:cd00882 49 LVLVDTPGLDEFGGLGREELAR-LLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGipiiLVGNKID 117
|
|
| Kti12 |
COG4088 |
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ... |
101-142 |
9.05e-04 |
|
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];
Pssm-ID: 443264 [Multi-domain] Cd Length: 179 Bit Score: 40.48 E-value: 9.05e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 553319361 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEEDARPLMIAADIYR 142
Cdd:COG4088 4 PMLLILTGPPGSGKTTFAKALAQRLYAEGIAVALLHSDDFRR 45
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
173-275 |
1.29e-03 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 40.41 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 173 VRKGLEQARENHnDYVLIDTAGRLQIDekLMEELRDVKALA---QPnEILLVVD-SMIGQEAANVAYEFNHQ-LSITGVV 247
Cdd:pfam01656 107 LREALEALKEDY-DYVIIDGAPGLGEL--LRNALIAADYVIiplEP-EVILVEDaKRLGGVIAALVGGYALLgLKIIGVV 182
|
90 100
....*....|....*....|....*...
gi 553319361 248 LTKIDGDTRGGAALSVREITGKPIKFTG 275
Cdd:pfam01656 183 LNKVDGDNHGKLLKEALEELLRGLPVLG 210
|
|
| Udk |
COG0572 |
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ... |
101-166 |
1.52e-03 |
|
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage
Pssm-ID: 440337 [Multi-domain] Cd Length: 206 Bit Score: 39.82 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEedaRPLMIAAD-IYR-----------------PAAID------QLKTL--GQ 154
Cdd:COG0572 7 PRIIGIAGPSGSGKTTFARRLAEQLGAD---KVVVISLDdYYKdrehlpldergkpnfdhPEAFDldllneHLEPLkaGE 83
|
90
....*....|..
gi 553319361 155 QINVPVFDMGTD 166
Cdd:COG0572 84 SVELPVYDFATG 95
|
|
| COG0645 |
COG0645 |
Predicted kinase, contains AAA domain [General function prediction only]; |
103-125 |
3.29e-03 |
|
Predicted kinase, contains AAA domain [General function prediction only];
Pssm-ID: 440410 [Multi-domain] Cd Length: 164 Bit Score: 38.36 E-value: 3.29e-03
10 20
....*....|....*....|...
gi 553319361 103 IIMMVGLQGAGKTTFAGKLANKL 125
Cdd:COG0645 1 LILVCGLPGSGKSTLARALAERL 23
|
|
| Zeta_toxin |
pfam06414 |
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ... |
96-218 |
4.09e-03 |
|
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Pssm-ID: 428926 Cd Length: 192 Bit Score: 38.50 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 96 KSPKIPTIIMMVGLQGAGKTTFAGKLANKLIKEEDArpLMIAADIYRPA--AIDQLKTLGQQINVPVF--DMGTdhsavd 171
Cdd:pfam06414 6 TSQERPKAILLGGQPGAGKTELARALLDELGRQGNV--VRIDPDDFRELhpHYRELQAADPKTASEYTqpDASR------ 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 553319361 172 IVRKGLEQARENHNDyVLIDTAGR-LQIDEKLMEELRD------VKALAQPNEI 218
Cdd:pfam06414 78 WVEKLLQHAIENGYN-IILEGTLRsPDVAKKIARALKAagyrveVAAVAAPPEL 130
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
103-207 |
4.13e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 39.00 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 103 IIMMVGLQGAGKTTFAGKLANKLikEEDARPLMI------AADIYRpaaidqlkTLGQQINVPVFDMGTDHSAVDIVRKG 176
Cdd:COG3267 45 FVVLTGEVGTGKTTLLRRLLERL--PDDVKVAYIpnpqlsPAELLR--------AIADELGLEPKGASKADLLRQLQEFL 114
|
90 100 110
....*....|....*....|....*....|.
gi 553319361 177 LEQARENHNDYVLIDTAGRLQIDekLMEELR 207
Cdd:COG3267 115 LELAAAGRRVVLIIDEAQNLPPE--TLEELR 143
|
|
| COG4639 |
COG4639 |
Predicted kinase [General function prediction only]; |
101-122 |
6.16e-03 |
|
Predicted kinase [General function prediction only];
Pssm-ID: 443677 [Multi-domain] Cd Length: 145 Bit Score: 37.12 E-value: 6.16e-03
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
106-280 |
6.31e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.18 E-value: 6.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 106 MVGLQGAGKTTFAGKLANKLIKEEDARPL-MIAADIYRPAAIDQLKTLGQQINVPVfdmgtdHSAVDI--VRKGLEQARE 182
Cdd:PRK06995 261 LMGPTGVGKTTTTAKLAARCVMRHGASKVaLLTTDSYRIGGHEQLRIYGKILGVPV------HAVKDAadLRLALSELRN 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553319361 183 NHndYVLIDTAGRLQIDEKLMEELRDVKALAQPNEILL-------------VVDSMIGQEAAnvayefnhqlsitGVVLT 249
Cdd:PRK06995 335 KH--IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLllnatshgdtlneVVQAYRGPGLA-------------GCILT 399
|
170 180 190
....*....|....*....|....*....|..
gi 553319361 250 KIDGDTRGGAALSVrEITGK-PIKFTGTGERI 280
Cdd:PRK06995 400 KLDEAASLGGALDV-VIRYKlPLHYVSNGQRV 430
|
|
| AAA_33 |
pfam13671 |
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ... |
104-125 |
8.38e-03 |
|
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.
Pssm-ID: 463952 [Multi-domain] Cd Length: 143 Bit Score: 36.90 E-value: 8.38e-03
|
| |
