|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
1-484 |
0e+00 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 537.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 1 MFGYLQKIGKALMVPVAVLPAAAIMLGIGYWidptGWGANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSKDKDGAAAL 80
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGNA----THGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGAAAL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 81 AGLVAFEIVTTLLSTGAVSQIMGIpQEEVHAAFGKINNQFIGILCGVISGELYNKFHKIELPRFLAFFSGKRFVPIITSV 160
Cdd:TIGR01998 77 AGLVAYFVVTKVLSPPPLAAALGI-KSEINMAFSAWKNVFVGILAGLIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 161 VMIVVSFILTYIWPIIYGALVTFGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNVAGINDIGRFWGSPDmaya 240
Cdd:TIGR01998 156 VGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDVAGINDFGNFTGGGD---- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 241 dlpeiLQGTYHV-GMYQAGFFPIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSFLTGVTEPIEFAFMFVAPVLYL 319
Cdd:TIGR01998 232 -----LNRFKGIaGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 320 LHALLTGISLFLAASFNWMAGFSFSGGFIDFFLSLKNPNANNPFMLIVLGLVFFVVYYFVFLFVIKAFNLKTPGREESEE 399
Cdd:TIGR01998 307 LHALLTGLSLFIAAMLHWTAGFSFSAGLIDYVLSFNNPTANQPLMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDP 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 400 EKAEAIKVKTTNS---ELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL-VPGVLKPSKESVQVIIGPH 475
Cdd:TIGR01998 387 EGATAAAVTSTGDskmQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKALgARGVVKLGKHNLQVILGPL 466
|
....*....
gi 552909034 476 VEFVATELK 484
Cdd:TIGR01998 467 AEIVAGEMK 475
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-489 |
4.22e-105 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 327.21 E-value: 4.22e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 1 MFGYLQKIGKALMVPVAVLPAAAIMLGIGYwidptgwgANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSKDKDGAAAL 80
Cdd:PRK10255 3 ILGFFQRLGRALQLPIAVLPVAALLLRFGQ--------PDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAAL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 81 AGLVAFEIVTTLLSTGAVSQIMGIpqeevhaafgkinnqFIGILCGVISGELYNKFHKIELPRFLAFFSGKRFVPIITSV 160
Cdd:PRK10255 75 AGAVGYFVLTKAMVTINPEINMGV---------------LAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGF 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 161 VMIVVSFILTYIWPIIYGALVTFGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNvagindIGRFWGSPDMAY- 239
Cdd:PRK10255 140 FCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQ------IGEFTNAAGTVFh 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 240 ADLPEILQGTYHVGMYQAGFFPIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSFLTGVTEPIEFAFMFVAPVLYL 319
Cdd:PRK10255 214 GDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYL 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 320 LHALLTGISLFLAASFNWMAGFSFSGGFIDFFLSLKNPNA-NNPFMLIVLGLVFFVVYYFVFLFVIKAFNLKTPGREESE 398
Cdd:PRK10255 294 LHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAsQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGREDKE 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 399 EEKAEAIKVKTTN---SELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL-VPGVLKPSKESVQVIIGP 474
Cdd:PRK10255 374 DEIVTEEANSNTEeglTQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLgASGVVKLNKQTIQVIVGA 453
|
490
....*....|....*
gi 552909034 475 HVEFVATELKRILGK 489
Cdd:PRK10255 454 KAESIGDAMKKVVAR 468
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-476 |
1.36e-70 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 231.75 E-value: 1.36e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 1 MFGYLQKIGKALMVPVAVLPAAAIMLGIGYWIDPTGW----GANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSkdkdG 76
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLlgegSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG----G 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 77 AAALAGLVAFEIVTTLLST-----GAVSQIMGIPQeevhaafgKINNQ---FIGILCGVISGELyNKFHKIELPRFLAFF 148
Cdd:COG1263 84 NPALAAVIGYLLVHPTLLNayavaGGYISFLGIPT--------LIGYQggvFPGILAGWLAAYL-EKFLKKKLPDALGFF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 149 sgkrFVPIITSVVMIVVSF-ILTYIWPIIYGALVT-FGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNVAGIN 226
Cdd:COG1263 155 ----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAgLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 227 DIGRFwgspdmayadlpeilqgtyhvgmyqaGFFPIMMFGLLGACVAFIQTSKPENRTKifSIMVAAGFTSFLTGVTEPI 306
Cdd:COG1263 231 DDGLF--------------------------PILAAAMFGQPGAALAVYLKAKPNKKVK--GLAISAALTAFLTGITEPA 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 307 EFAFMFVAPVLYLLHALLTGISLFLAASFNWMAgFSFS-GGFIDfFLSLKNPNANNpFMLIVLGLVFFVVYYFVFLFVIk 385
Cdd:COG1263 283 EFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKA-FSFGvGGLID-FPSILNPGATN-LLLYLIGLVIAFVYYFVFTFLI- 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 386 afnlktpGREESEEEKAEAIKVKTTNSELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKLVPGVLKPSK 465
Cdd:COG1263 359 -------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGV 431
|
490
....*....|.
gi 552909034 466 ESVQVIIGPHV 476
Cdd:COG1263 432 GGVGAVGGVGG 442
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
9-326 |
1.42e-49 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 172.15 E-value: 1.42e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 9 GKALMVPVAVLPAAAIMLGIGYWIDPTGW------GANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSKDKDGAAALAG 82
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDTTGlpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 83 LVA--FEIVTTLLSTGAVSQIMGIPqeEVHAAFGKINNQFIGILCGVISGELYNKFHK---IELPRFLAFFSGKRFVPII 157
Cdd:pfam02378 81 IGLlsFNLAAAISVALTAAGLSGGG--NILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPII 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 158 TS-VVMIVVSFILTYIWPIIYGALVTFGT-NIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNVAGIndigrfwgsp 235
Cdd:pfam02378 159 TGfVTLLVIGPVLGLIWPAIQGGLNALGLlLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGG---------- 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 236 dmaYADLPEILQGTYHVGMYQAGFFpIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSFLTGVTEPIEFAFMFVAP 315
Cdd:pfam02378 229 ---SNPIANQQAYGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLN 304
|
330
....*....|.
gi 552909034 316 VLYLLHALLTG 326
Cdd:pfam02378 305 PPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
412-487 |
7.35e-20 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 83.74 E-value: 7.35e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552909034 412 SELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL--VPGVLKpSKESVQVIIGPHV-EFVATELKRIL 487
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLggVKGVVK-NGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
1-484 |
0e+00 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 537.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 1 MFGYLQKIGKALMVPVAVLPAAAIMLGIGYWidptGWGANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSKDKDGAAAL 80
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGNA----THGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGAAAL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 81 AGLVAFEIVTTLLSTGAVSQIMGIpQEEVHAAFGKINNQFIGILCGVISGELYNKFHKIELPRFLAFFSGKRFVPIITSV 160
Cdd:TIGR01998 77 AGLVAYFVVTKVLSPPPLAAALGI-KSEINMAFSAWKNVFVGILAGLIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 161 VMIVVSFILTYIWPIIYGALVTFGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNVAGINDIGRFWGSPDmaya 240
Cdd:TIGR01998 156 VGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDVAGINDFGNFTGGGD---- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 241 dlpeiLQGTYHV-GMYQAGFFPIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSFLTGVTEPIEFAFMFVAPVLYL 319
Cdd:TIGR01998 232 -----LNRFKGIaGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 320 LHALLTGISLFLAASFNWMAGFSFSGGFIDFFLSLKNPNANNPFMLIVLGLVFFVVYYFVFLFVIKAFNLKTPGREESEE 399
Cdd:TIGR01998 307 LHALLTGLSLFIAAMLHWTAGFSFSAGLIDYVLSFNNPTANQPLMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDP 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 400 EKAEAIKVKTTNS---ELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL-VPGVLKPSKESVQVIIGPH 475
Cdd:TIGR01998 387 EGATAAAVTSTGDskmQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKALgARGVVKLGKHNLQVILGPL 466
|
....*....
gi 552909034 476 VEFVATELK 484
Cdd:TIGR01998 467 AEIVAGEMK 475
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
2-487 |
1.53e-107 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 329.05 E-value: 1.53e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 2 FGYLQKIGKALMVPVAVLPAAAIMLGIG---------YWIDPTGWGANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSK 72
Cdd:TIGR02002 5 FGQLQKIGKALMLPVAVLPVAGILLGFGnanqnnqvfSFLPFLHMEWIQLVSKVMEAAGGIIFANLPLIFAIGVALGLAG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 73 DKDGAAALAGLVAFEIVTTLLSTGAVSQIMGIPQEEVHAAFGKINNQFIGILCGVISGEL----YNKFHKIELPRFLAFF 148
Cdd:TIGR02002 85 NDGVAGLAALVGYLIMNKTMGVVAGLTLLLIASEIASFASVLGIPTLQTGVFGGIIIGAIaaycYNRFYNIKLPEYLGFF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 149 SGKRFVPIITSVVMIVVSFILTYIWPIIYGALVTFGTNIAKLGP-VGAGIYGFFNRLLIPVGLHHAVNSVFWFNVAG-IN 226
Cdd:TIGR02002 165 AGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNPvVAFFIFGFIERSLIPFGLHHIFNAPFWFEFGSyTN 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 227 DIGR-FWGSPDMAYADLPEILQGTyhVGMYQAGFFPIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSFLTGVTEP 305
Cdd:TIGR02002 245 EAGNlFRGDQPIFMAQLKDGVAFT--AGGFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFLTGITEP 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 306 IEFAFMFVAPVLYLLHALLTGISLFLAASFNWMAGFSFSGGFIDFFLSLKNPNANNPFMLIVLGLVFFVVYYFVFLFVIK 385
Cdd:TIGR02002 323 LEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDFILYGLLSNRSKAWLFIIVGIGYAIIYYFLFRFLIK 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 386 AFNLKTPGREESEEEKaeaiKVKTTNSELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL-VPGVLKPS 464
Cdd:TIGR02002 403 KLNLKTPGREDATAEA----KATGEPSELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLgAAGVLVVG 478
|
490 500
....*....|....*....|...
gi 552909034 465 kESVQVIIGPHVEFVATELKRIL 487
Cdd:TIGR02002 479 -NNVQAIFGPKSDTIKSEMHDII 500
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-489 |
4.22e-105 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 327.21 E-value: 4.22e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 1 MFGYLQKIGKALMVPVAVLPAAAIMLGIGYwidptgwgANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSKDKDGAAAL 80
Cdd:PRK10255 3 ILGFFQRLGRALQLPIAVLPVAALLLRFGQ--------PDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAAL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 81 AGLVAFEIVTTLLSTGAVSQIMGIpqeevhaafgkinnqFIGILCGVISGELYNKFHKIELPRFLAFFSGKRFVPIITSV 160
Cdd:PRK10255 75 AGAVGYFVLTKAMVTINPEINMGV---------------LAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGF 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 161 VMIVVSFILTYIWPIIYGALVTFGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNvagindIGRFWGSPDMAY- 239
Cdd:PRK10255 140 FCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQ------IGEFTNAAGTVFh 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 240 ADLPEILQGTYHVGMYQAGFFPIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSFLTGVTEPIEFAFMFVAPVLYL 319
Cdd:PRK10255 214 GDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYL 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 320 LHALLTGISLFLAASFNWMAGFSFSGGFIDFFLSLKNPNA-NNPFMLIVLGLVFFVVYYFVFLFVIKAFNLKTPGREESE 398
Cdd:PRK10255 294 LHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAsQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGREDKE 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 399 EEKAEAIKVKTTN---SELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL-VPGVLKPSKESVQVIIGP 474
Cdd:PRK10255 374 DEIVTEEANSNTEeglTQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLgASGVVKLNKQTIQVIVGA 453
|
490
....*....|....*
gi 552909034 475 HVEFVATELKRILGK 489
Cdd:PRK10255 454 KAESIGDAMKKVVAR 468
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
2-483 |
1.49e-103 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 317.81 E-value: 1.49e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 2 FGYLQKIGKALMVPVAVLPAAAIMLGIGY----WIDPTgwgaNSQLAAfliKAGAAIMDNMAILFAVGVAYGLSKDkDGA 77
Cdd:PRK11089 6 FANLQKVGKSLMLPVSVLPIAGILLGVGSanfsWLPAV----VSHVMA---EAGGSVFANMPLIFAIGVALGFTNN-DGV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 78 AALAGLVAFEIVTTLLSTGAvSQIMGIPQEEVHAAFGKINNQFIGILCGVISGELYNKFHKIELPRFLAFFSGKRFVPII 157
Cdd:PRK11089 78 SALAAVVAYGIMVKTMAVVA-PLVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 158 TSVVMIVVSFILTYIWPIIYGALVTFGTNIAKLGPVGA-GIYGFFNRLLIPVGLHHAVNSVFWFNVAG-INDIGRFWgsp 235
Cdd:PRK11089 157 SGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAfGIYGFVERSLVPFGLHHIWNVPFQMQIGEyTNAAGQVF--- 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 236 dmaYADLPEILQGTYHVGMYQAGFFpIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSFLTGVTEPIEFAFMFVAP 315
Cdd:PRK11089 234 ---HGDIPRYMAGDPTAGKLSGGFL-FKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAP 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 316 VLYLLHALLTGISLFLAASFNWMAGFSFSGGFIDFFlsLKNPNANNPFMLIVLGLVFFVVYYFVFLFVIKAFNLKTPGRe 395
Cdd:PRK11089 310 ILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFI--VLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGR- 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 396 eseeEKAEAIKVKTTNSELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKLVPGVLKPSKESVQVIIGPH 475
Cdd:PRK11089 387 ----EDETEDAKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTK 462
|
....*...
gi 552909034 476 VEFVATEL 483
Cdd:PRK11089 463 SDNLKTEM 470
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-476 |
1.36e-70 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 231.75 E-value: 1.36e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 1 MFGYLQKIGKALMVPVAVLPAAAIMLGIGYWIDPTGW----GANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSkdkdG 76
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLlgegSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG----G 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 77 AAALAGLVAFEIVTTLLST-----GAVSQIMGIPQeevhaafgKINNQ---FIGILCGVISGELyNKFHKIELPRFLAFF 148
Cdd:COG1263 84 NPALAAVIGYLLVHPTLLNayavaGGYISFLGIPT--------LIGYQggvFPGILAGWLAAYL-EKFLKKKLPDALGFF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 149 sgkrFVPIITSVVMIVVSF-ILTYIWPIIYGALVT-FGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNVAGIN 226
Cdd:COG1263 155 ----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAgLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 227 DIGRFwgspdmayadlpeilqgtyhvgmyqaGFFPIMMFGLLGACVAFIQTSKPENRTKifSIMVAAGFTSFLTGVTEPI 306
Cdd:COG1263 231 DDGLF--------------------------PILAAAMFGQPGAALAVYLKAKPNKKVK--GLAISAALTAFLTGITEPA 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 307 EFAFMFVAPVLYLLHALLTGISLFLAASFNWMAgFSFS-GGFIDfFLSLKNPNANNpFMLIVLGLVFFVVYYFVFLFVIk 385
Cdd:COG1263 283 EFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKA-FSFGvGGLID-FPSILNPGATN-LLLYLIGLVIAFVYYFVFTFLI- 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 386 afnlktpGREESEEEKAEAIKVKTTNSELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKLVPGVLKPSK 465
Cdd:COG1263 359 -------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGV 431
|
490
....*....|.
gi 552909034 466 ESVQVIIGPHV 476
Cdd:COG1263 432 GGVGAVGGVGG 442
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
1-488 |
5.63e-64 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 216.14 E-value: 5.63e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 1 MFGYLQKIGKALMVPVAVLPAAAIMLGIGY------WIDPTGWGANSQLAA---FLIKAGAAIMDNMAILFAVGVAYGLS 71
Cdd:PRK10110 11 LWEFFQQLGKTFMLPVALLSFCGIMLGIGSslsshdVITLIPFLGNPVLQAiftWMSKIGSFAFSFLPVMFCIAIPLGLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 72 KDKDGAAALAGLVAFEIVTtlLSTGAVSQIMGIPQEEVHAAFGKINNQFI--------GILCGVISG----ELYNKFHKI 139
Cdd:PRK10110 91 RENKGVAAFAGFVGYAVMN--LAVNFWLTNKGILPTTDAAVLKANNIQSIlgiqsidtGILGAVIAGiivwMLHERFHNI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 140 ELPRFLAFFSGKRFVPIITSVVMIVVSFILTYIWPIIYGALVTFGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFW 219
Cdd:PRK10110 169 RLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIR 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 220 FNVAGINDI---GRFWGSPDMAYADL--PEILQGTYHVGMY-QAGFFPIMMFGLLGACVAFIQTSKPENRTKIFSIMVAA 293
Cdd:PRK10110 249 FTDAGGTQEvcgQTVSGALTIFQAQLscPTTHGFSESATRFlSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 294 GFTSFLTGVTEPIEFAFMFVAPVLYLLHALLTGISLFLAASFNWMAGfSFSGGFIDFFL-SLKNPNANNPFMLIVLGLVF 372
Cdd:PRK10110 329 VIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIG-NTDGNIIDFVVfGILHGLSTKWYMVPVVAAIW 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 373 FVVYYFVFLFVIKAFNLKTPGREESEEEKAEAIKVKTTNSE--LAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKE 450
Cdd:PRK10110 408 FVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSgyNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDV 487
|
490 500 510
....*....|....*....|....*....|....*....
gi 552909034 451 SEIKKL-VPGVLKPSKESVQVIIGPHVEFVATELKRILG 488
Cdd:PRK10110 488 QALKDNrAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMH 526
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
4-487 |
3.82e-58 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 200.45 E-value: 3.82e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 4 YLQKIGKALMVPVAVLPAAAIMLGIGYWIDPTgwgANSQLAAFLIKAGAAI----MDN--------MAILFAVGVAYGLS 71
Cdd:TIGR02004 7 FFQGLGKTFMLPVALLAFMGILLGLGSSFSSE---AMIETIPFLGKPAFKIifqwMSTiglvafayLPVMFAMAIPLGLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 72 KDKDGAAALAGLVAFEIVTTLLSTGAVSQIMGIPQEEVHAA-----FGkINNQFIGILCGVISG----ELYNKFHKIELP 142
Cdd:TIGR02004 84 REEKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLREAgqgmvFG-IQSIDTGVLGAVIVGlivyKLHNRFYTVQMP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 143 RFLAFFSGKRFVPIITSVVMIVVSFILTYIWPIIYGALVTFGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNV 222
Cdd:TIGR02004 163 DALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMIRFTE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 223 AGINDI---GRFWGSPDMAYADLPEILQGTYH---VGMYQAGFFPIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFT 296
Cdd:TIGR02004 243 AGGSAVvcgKEVSGALNIFYAELQCNLPISAVpsaTAFLSQGKMPTFLGGLPGAALAMYHCARPANRHKIKALLLSGVVA 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 297 SFLTGVTEPIEFAFMFVAPVLYLLHALLTGISLFLAASFNWMAGfSFSGGFIDFFL-SLKNPNANNPFMLIVLGLVFFVV 375
Cdd:TIGR02004 323 CAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIG-NTDGNLIDFLVfGVLQGTYTKWYLVPIVAAIWFVV 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 376 YYFVFLFVIKAFNLKTPGREESEEEKAE---AIKVKTTNSELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESE 452
Cdd:TIGR02004 402 YYFVFKTAITTFDLKTPGREKVLDAEEYteqEVAYKKTGGYDAAAILAALGGQENIQSLDNCITRLRLVVADANKVDDAK 481
|
490 500 510
....*....|....*....|....*....|....*.
gi 552909034 453 IKKL-VPGVLKPSKESVQVIIGPHVEFVATELKRIL 487
Cdd:TIGR02004 482 LKQLgALGVVKLDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
9-326 |
1.42e-49 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 172.15 E-value: 1.42e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 9 GKALMVPVAVLPAAAIMLGIGYWIDPTGW------GANSQLAAFLIKAGAAIMDNMAILFAVGVAYGLSKDKDGAAALAG 82
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDTTGlpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 83 LVA--FEIVTTLLSTGAVSQIMGIPqeEVHAAFGKINNQFIGILCGVISGELYNKFHK---IELPRFLAFFSGKRFVPII 157
Cdd:pfam02378 81 IGLlsFNLAAAISVALTAAGLSGGG--NILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPII 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 158 TS-VVMIVVSFILTYIWPIIYGALVTFGT-NIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNVAGIndigrfwgsp 235
Cdd:pfam02378 159 TGfVTLLVIGPVLGLIWPAIQGGLNALGLlLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGG---------- 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 236 dmaYADLPEILQGTYHVGMYQAGFFpIMMFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSFLTGVTEPIEFAFMFVAP 315
Cdd:pfam02378 229 ---SNPIANQQAYGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLN 304
|
330
....*....|.
gi 552909034 316 VLYLLHALLTG 326
Cdd:pfam02378 305 PPFFIPAILAG 315
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
5-487 |
7.34e-48 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 172.69 E-value: 7.34e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 5 LQKIGKALMVPVAVLPAAAIMLGIGYWI-DPTGWGANSQLAAFLIK-------AGAAIMDNMAILFAVGVAYGLSKDKDG 76
Cdd:TIGR02005 4 IQRFGGAMFVPVLLFAFAGIVVGFAILFkNPDIMGSLADQNTFWYKfwsvieeGGWTVFRQMPLIFVVGLPIGLAKKAQG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 77 AAALAGLVAF--------EIVTTLLSTGAVS----QIMGIPQEEVHAAFGKINNQFIG-ILCGVISGELYNKFHKIELPR 143
Cdd:TIGR02005 84 RACLAALMGYltfnyfinAILTQWGSSFGVNftqgVGVGVSGLTSIAGIKTLDTSIIGaIIISGIITYIHNRFFDKRLPV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 144 FLAFFSGKRFVPIITSVVMIVVSFILTYIWPIIYGALVTFGTNIAKLGPVGAGIYGFFNRLLIPVGLHHAVNSVFWFNVA 223
Cdd:TIGR02005 164 FLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHHFIYGPFIFGPA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 224 GIND-IGRFWGSPDMAYADLPEILQgtyhvGMYQAGFFPIM----MFGLLGACVAFIQTSKPENRTKIFSIMVAAGFTSF 298
Cdd:TIGR02005 244 VVNHgIQAYWAQHLNEFAKSTKPLK-----ELFPYGGFALHgnskVFGCLGIALAMYATAPPENRKKVAGLLIPATLTAV 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 299 LTGVTEPIEFAFMFVAPVLYLLHALLTGISLFLAASFNWMAgfSFSGGFIDFF----LSLKNPNANNPFMLIVLGLVFFV 374
Cdd:TIGR02005 319 VVGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVG--NMGGGLIDFIatnwLPLFKNHWGTYVTQIIIGLCFTA 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 375 VYYFVFLFVIKAFNLKTPGREESEEEKAEAIK----------VKTTNSEL----AETLVGLLGGADNIVEVDNCTTRLRL 440
Cdd:TIGR02005 397 IYFLVFRFLILKFNIPTPGREDTEEEVKLYSKadykakkgdsVESKRASSgndkAAYFLQALGGKENIKDVTNCATRLRI 476
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 552909034 441 KVKDSANIKESEI--KKLVPGVLKPSKeSVQVIIGPHVEFVATELKRIL 487
Cdd:TIGR02005 477 SVKDESKVLDDEVfkKAGAHGVVRSGK-AIQVIVGLSVPQVREAFEQLV 524
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
51-333 |
2.49e-42 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 152.09 E-value: 2.49e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 51 GAAIMDNMAILFAVGVAYGLSKDKDGAAALAGLVAFEIVTTLLSTGAVSQImGIPQEEVHAAfgKINNQFIGILCGVISG 130
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVG-NFFGFEIAKV--GYTGVVGPIIVGAIAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 131 ELYNKFHKIELPRFLAFFSGKRFVPIITSVVMIVVSFILTYIWPIIyGALVTFGTNIAKLGPVGAGIYGFFNRLLIPVGL 210
Cdd:TIGR00852 78 ALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV-GISALLHWLYSAGGALGGAIFGFLYRLLVPTGL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 211 HHAVNSVFWFNVAGINDIGR---FWGSPDMAYADLPEILQGTYHVGMYQ---AGFFPIMMFGLLGACVAFIQTSKPENRT 284
Cdd:TIGR00852 157 HHIFYAIFIQLIAGGTVIGGgqvIPGDALANMAQGGAALAVFFTAGDAKfksIGLPAAFSAGLGITEPAMYGVALRERRP 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 552909034 285 KIFSIMVAAGFTSFLTGVTEPIEFAFMFVAPVLYLLHALLTGISLFLAA 333
Cdd:TIGR00852 237 FVAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAI 285
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
412-487 |
8.16e-26 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 100.19 E-value: 8.16e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 552909034 412 SELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL-VPGVLKPSKEsVQVIIGPHVEFVATELKRIL 487
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLgVKGVVKNGGQ-VQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
412-487 |
7.35e-20 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 83.74 E-value: 7.35e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552909034 412 SELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL--VPGVLKpSKESVQVIIGPHV-EFVATELKRIL 487
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLggVKGVVK-NGGQYQVIIGPGVaDVYKEAIKLLG 78
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|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
385-473 |
6.87e-12 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 61.22 E-value: 6.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 385 KAFNLKTPGREESEEEKAEAIKVKTTNsELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKLVPGVLKPS 464
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGV-FTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNPL 79
|
....*....
gi 552909034 465 KESVQVIIG 473
Cdd:TIGR00826 80 QRAVQVISG 88
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
416-446 |
5.26e-10 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 54.30 E-value: 5.26e-10
10 20 30
....*....|....*....|....*....|.
gi 552909034 416 ETLVGLLGGADNIVEVDNCTTRLRLKVKDSA 446
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDES 31
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
408-474 |
1.00e-07 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 54.30 E-value: 1.00e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552909034 408 KTTNSELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKLvPGVLK--PSKESVQVIIGP 474
Cdd:PRK09586 2 AKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTI-EGVKGviLSDDQVQVVLGP 69
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
384-487 |
5.24e-07 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 49.32 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 384 IKAFNLKTPGREESEEEKAEAIKVKTTNSEL-----------AETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESE 452
Cdd:PRK09702 31 ILQFNMCTPGREDAEVKLYSKAEYKASRGQTtaaepkkeldqAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDE 110
|
90 100 110
....*....|....*....|....*....|....*..
gi 552909034 453 I-KKL-VPGVLKpSKESVQVIIGPHVEFVATELKRIL 487
Cdd:PRK09702 111 VfKKLgAHGVFR-SGDAIQVIIGLHVSQLREQLDSLI 146
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
412-488 |
7.17e-07 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 51.72 E-value: 7.17e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552909034 412 SELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL--VPGVLKpSKESVQVIIGPHVEFVATELKRILG 488
Cdd:PRK09796 6 AALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpgVLGVVR-SDNQCQVIIGNTVSQAFQEVVSLLP 83
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
412-487 |
5.06e-06 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 48.49 E-value: 5.06e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552909034 412 SELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL--VPGVLKPSKEsVQVIIGPH-VEFVATELKRIL 487
Cdd:PRK14905 275 SEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIdcVKGLFSIANQ-YQIILGAGiVEKIHEEMKALL 352
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
411-489 |
8.04e-06 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 48.14 E-value: 8.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 411 NSELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANIKESEIKKL--VPGVLKPSKEsVQVIIGPHVEFVATELKRILG 488
Cdd:PRK11007 6 NQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLpmVKGCFTNAGQ-FQVVIGTEVGDYYKALIATTG 84
|
.
gi 552909034 489 K 489
Cdd:PRK11007 85 Q 85
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
413-488 |
8.32e-06 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 48.17 E-value: 8.32e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 552909034 413 ELAETLVGLLGGADNIVEVDNCTTRLRLKVKDSANiKESEIKKLVPGVLK--PSKESVQVIIGPHVEFVATELKRILG 488
Cdd:PRK09824 5 ELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSK-AQAEVLKKNPGVIMvvESGGQFQVVIGNHVADVFLAVNSVAG 81
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
144-332 |
1.01e-04 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 44.68 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 144 FLAFFSG--KRFVP-----IITSVVMIVVSFIL--TYIWPI--IYGALVTFGTNIAKLG---PVGAGIYGFFNRLLIPVG 209
Cdd:PRK11007 241 ALGFIETrlKRIVPdylylVVVPVCSLILAVFLahALIGPFgrMIGDGVAFAVKALMTGsfaPIGAALFGFLYAPLVITG 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552909034 210 LHHAVNSVfwfNVAGINDIGrfwGSPDMAYADLPEILQGTyhvgmyqagffpimmfgllgACVAFIQTSKPENRTKifsI 289
Cdd:PRK11007 321 VHQTTLAI---DLQMIQSMG---GTPVWPLIALSNIAQAS--------------------AVVGIIIISRKHNERE---I 371
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 552909034 290 MVAAGFTSFLtGVTEP------IEFAF-MFVAPVLYLLHALLTGISLFLA 332
Cdd:PRK11007 372 SVPAAISAYL-GVTEPamyginLKYRFpMLCAMIGSALAGLICGLNGVMA 420
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