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Conserved domains on  [gi|551693771|gb|ERT65203|]
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di-trans,poly-cis-decaprenylcistransferase [Peptoniphilus sp. BV3AC2]

Protein Classification

undecaprenyl diphosphate synthase family protein( domain architecture ID 10000255)

undecaprenyl diphosphate synthase (UPPS) family protein catalyzes consecutive condensation reactions of farnesyl diphosphate (FPP) with specific numbers of isopentenyl diphosphate (IPP) to form long-chain polyprenyl diphosphates, similar to UPPS that catalyzes chain elongation of FPP by eight IPP to form the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis

Gene Ontology:  GO:0016765|GO:0000287|GO:0002094
PubMed:  22471620

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
2-237 1.59e-150

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


:

Pssm-ID: 439791  Cd Length: 248  Bit Score: 418.69  E-value: 1.59e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLN 81
Cdd:COG0020    9 EIDPGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLR 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 SFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLE 161
Cdd:COG0020   89 EYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARDVAAGELDPE 168

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 551693771 162 DITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:COG0020  169 DIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGGT 244
 
Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
2-237 1.59e-150

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 418.69  E-value: 1.59e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLN 81
Cdd:COG0020    9 EIDPGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLR 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 SFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLE 161
Cdd:COG0020   89 EYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARDVAAGELDPE 168

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 551693771 162 DITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:COG0020  169 DIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGGT 244
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 2-237 5.25e-136

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 382.30  E-value: 5.25e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLN 81
Cdd:PRK14830  16 ELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPV 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 SFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLE 161
Cdd:PRK14830  96 EFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPE 175

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 551693771 162 DITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:PRK14830 176 DITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGGV 251
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 11-229 6.43e-134

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 375.56  E-value: 6.43e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  11 HIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDKKLKR 90
Cdd:cd00475    1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  91 LHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLEDITEDSFND 170
Cdd:cd00475   81 LHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEELISK 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 551693771 171 FLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQN 229
Cdd:cd00475  161 HLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQR 219
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 15-235 8.23e-131

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 367.85  E-value: 8.23e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   15 IMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNS-FIDKKLKRLHE 93
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWKRPKEEVDALMELLKEeYLRRELPELHK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   94 NGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKdgKLNLEDITEDSFNDFLY 173
Cdd:pfam01255  81 NGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIVKEGK--KLDPEDIDEELISSHLY 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 551693771  174 TKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:pfam01255 159 TAGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQRRERRFG 220
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 11-235 8.00e-96

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 279.67  E-value: 8.00e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   11 HIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDKKLKR 90
Cdd:TIGR00055   2 HVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   91 LHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLEDITEDSFND 170
Cdd:TIGR00055  82 LHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNK 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 551693771  171 FLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:TIGR00055 162 HLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226
 
Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
2-237 1.59e-150

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 418.69  E-value: 1.59e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLN 81
Cdd:COG0020    9 EIDPGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLR 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 SFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLE 161
Cdd:COG0020   89 EYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARDVAAGELDPE 168

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 551693771 162 DITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:COG0020  169 DIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGGT 244
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 2-237 5.25e-136

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 382.30  E-value: 5.25e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLN 81
Cdd:PRK14830  16 ELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPV 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 SFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLE 161
Cdd:PRK14830  96 EFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPE 175

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 551693771 162 DITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:PRK14830 176 DITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGGV 251
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 11-229 6.43e-134

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 375.56  E-value: 6.43e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  11 HIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDKKLKR 90
Cdd:cd00475    1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  91 LHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLEDITEDSFND 170
Cdd:cd00475   81 LHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEELISK 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 551693771 171 FLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQN 229
Cdd:cd00475  161 HLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQR 219
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 15-235 8.23e-131

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 367.85  E-value: 8.23e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   15 IMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNS-FIDKKLKRLHE 93
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWKRPKEEVDALMELLKEeYLRRELPELHK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   94 NGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKdgKLNLEDITEDSFNDFLY 173
Cdd:pfam01255  81 NGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIVKEGK--KLDPEDIDEELISSHLY 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 551693771  174 TKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:pfam01255 159 TAGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQRRERRFG 220
PRK14831 PRK14831
undecaprenyl pyrophosphate synthase; Provisional
 1-237 1.70e-99

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184841  Cd Length: 249  Bit Score: 289.54  E-value: 1.70e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   1 MEIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLL 80
Cdd:PRK14831  13 ADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLF 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  81 NSFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNL 160
Cdd:PRK14831  93 ERVLRRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGELDP 172

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 551693771 161 EDITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:PRK14831 173 SEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGGV 249
PRK14834 PRK14834
isoprenyl transferase;
8-237 3.03e-99

isoprenyl transferase;


Pssm-ID: 237829  Cd Length: 249  Bit Score: 288.96  E-value: 3.03e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   8 VPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDKK 87
Cdd:PRK14834  14 VPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIRRD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  88 LKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLEDITEDS 167
Cdd:PRK14834  94 LAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDAET 173

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771 168 FNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:PRK14834 174 ISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRERRFGGL 243
PRK14836 PRK14836
undecaprenyl pyrophosphate synthase; Provisional
 7-235 9.21e-99

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237831  Cd Length: 253  Bit Score: 288.12  E-value: 9.21e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   7 KVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDK 86
Cdd:PRK14836  13 NIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  87 KLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLEDITED 166
Cdd:PRK14836  93 EVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLAPDEIDEA 172

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 551693771 167 SFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:PRK14836 173 LLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQALEDYASRERRFG 241
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 11-235 8.00e-96

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 279.67  E-value: 8.00e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   11 HIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDKKLKR 90
Cdd:TIGR00055   2 HVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   91 LHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLEDITEDSFND 170
Cdd:TIGR00055  82 LHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNK 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 551693771  171 FLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:TIGR00055 162 HLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226
PRK14838 PRK14838
isoprenyl transferase;
2-235 4.85e-93

isoprenyl transferase;


Pssm-ID: 184846  Cd Length: 242  Bit Score: 272.90  E-value: 4.85e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLN 81
Cdd:PRK14838   4 QIDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 SFIDKKLkrLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLE 161
Cdd:PRK14838  84 DSIEEET--FMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPE 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 551693771 162 DITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:PRK14838 162 EITEESISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFG 235
PRK14829 PRK14829
undecaprenyl pyrophosphate synthase; Provisional
 2-236 1.61e-91

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237826  Cd Length: 243  Bit Score: 269.35  E-value: 1.61e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLN 81
Cdd:PRK14829   8 DIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSR 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 SFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLE 161
Cdd:PRK14829  88 DVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISGD 167

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 551693771 162 DITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGG 236
Cdd:PRK14829 168 RVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEYAHRDRRFGG 242
PRK14842 PRK14842
undecaprenyl pyrophosphate synthase; Provisional
 1-237 1.08e-81

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173303  Cd Length: 241  Bit Score: 244.13  E-value: 1.08e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   1 MEIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLL 80
Cdd:PRK14842   1 MGLFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  81 NSFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNL 160
Cdd:PRK14842  81 VEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTL 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 551693771 161 ED-ITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:PRK14842 161 EKpLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTRKFGGL 238
PRK14832 PRK14832
undecaprenyl pyrophosphate synthase; Provisional
 2-235 1.14e-80

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237827  Cd Length: 253  Bit Score: 242.21  E-value: 1.14e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLN 81
Cdd:PRK14832  12 DLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 SFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLE 161
Cdd:PRK14832  92 RLLRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSAD 171

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 551693771 162 DITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:PRK14832 172 AVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFG 245
PRK10240 PRK10240
(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;
16-236 3.09e-80

(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;


Pssm-ID: 182326  Cd Length: 229  Bit Score: 240.27  E-value: 3.09e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  16 MDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDKKLKRLHENG 95
Cdd:PRK10240   1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  96 VKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLEDITEDSFNDFLYTK 175
Cdd:PRK10240  81 VRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMH 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 551693771 176 DIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGG 236
Cdd:PRK10240 161 ELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGG 221
PRK14827 PRK14827
undecaprenyl pyrophosphate synthase; Provisional
 3-235 3.75e-80

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173288  Cd Length: 296  Bit Score: 242.17  E-value: 3.75e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   3 IDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNS 82
Cdd:PRK14827  62 IPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRD 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  83 FIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLED 162
Cdd:PRK14827 142 VVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREAAAGRLNPER 221

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 551693771 163 ITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:PRK14827 222 ITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRNRRFG 294
PRK14833 PRK14833
di-trans,poly-cis-decaprenylcistransferase;
9-237 3.48e-79

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237828  Cd Length: 233  Bit Score: 237.40  E-value: 3.48e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   9 PAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDKKL 88
Cdd:PRK14833   5 LKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKDER 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  89 KRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNLEdITEDSF 168
Cdd:PRK14833  85 STYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPSHIGELE-SLEEEI 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 551693771 169 NDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:PRK14833 164 SNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGGL 232
PRK14839 PRK14839
di-trans,poly-cis-decaprenylcistransferase;
11-237 9.04e-74

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237832  Cd Length: 239  Bit Score: 223.86  E-value: 9.04e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  11 HIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDKKLKR 90
Cdd:PRK14839  12 HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRNETER 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  91 LHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKliardykdGKLNLEDITEDSFND 170
Cdd:PRK14839  92 LARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAA--------KALGPEGLSREAFSD 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 551693771 171 FLyTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:PRK14839 164 LL-TGDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRERRFGGL 229
PRK14840 PRK14840
undecaprenyl pyrophosphate synthase; Provisional
 5-235 1.18e-71

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173301  Cd Length: 250  Bit Score: 218.95  E-value: 1.18e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   5 LNKVPAHIGIIMDGNGRWAKNKNKIRSF----GHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLL 80
Cdd:PRK14840  15 LQSLPRHVAIIMDGNRRWYRKHEQFCQKraisGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLF 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  81 NSFIDKKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNL 160
Cdd:PRK14840  95 NSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISS 174

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 551693771 161 EDITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:PRK14840 175 DDISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQQRSRRGG 249
PRK14841 PRK14841
undecaprenyl pyrophosphate synthase; Provisional
 7-237 2.32e-66

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173302  Cd Length: 233  Bit Score: 204.84  E-value: 2.32e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   7 KVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFIDK 86
Cdd:PRK14841   2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  87 KLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKlnLEDITED 166
Cdd:PRK14841  82 EMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGK--KIELTEE 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 551693771 167 SFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGGL 237
Cdd:PRK14841 160 TFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFGGL 230
PRK14837 PRK14837
undecaprenyl pyrophosphate synthase; Provisional
 6-235 3.83e-66

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173298  Cd Length: 230  Bit Score: 204.29  E-value: 3.83e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   6 NKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLNSFID 85
Cdd:PRK14837   4 NSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  86 KKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIArdykDGKLNLEDITE 165
Cdd:PRK14837  84 SEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFL----SSGLDLETLNE 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771 166 DSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYG 235
Cdd:PRK14837 160 NVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECFKNRKRNFG 229
PRK14828 PRK14828
undecaprenyl pyrophosphate synthase; Provisional
 2-236 9.51e-60

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237825  Cd Length: 256  Bit Score: 188.80  E-value: 9.51e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIR-SFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLL 80
Cdd:PRK14828  20 ELDGAQVPGHVGIIVDGNRRWARKAGFTDvSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDII 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  81 NSFIDKKLKrlhENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKDGKLNL 160
Cdd:PRK14828 100 EDVVRQLAP---DGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSI 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771 161 ED----ITEDSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRNRRYGG 236
Cdd:PRK14828 177 DElaesVTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256
PRK14835 PRK14835
isoprenyl transferase;
2-235 7.40e-56

isoprenyl transferase;


Pssm-ID: 237830  Cd Length: 275  Bit Score: 179.65  E-value: 7.40e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771   2 EIDLNKVPAHIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGYLMTLLn 81
Cdd:PRK14835  35 EVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLF- 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  82 sfiDKKLKRL------HENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAEIVRASKLIARDYKD 155
Cdd:PRK14835 114 ---EREARRMavdpriHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEAAA 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771 156 GKLNLEDITE----DSFNDFLYTKDIPPVDLLIRPGGEKRISNFLLYQLAYAEFIFVDTLWPDFREENLREAILEYQNRN 231
Cdd:PRK14835 191 TGKSPEEVAAeltpEHISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRE 270


                 ....
gi 551693771 232 RRYG 235
Cdd:PRK14835 271 RRFG 274
PTZ00349 PTZ00349
dehydrodolichyl diphosphate synthetase; Provisional
 11-227 6.57e-29

dehydrodolichyl diphosphate synthetase; Provisional


Pssm-ID: 185571  Cd Length: 322  Bit Score: 110.86  E-value: 6.57e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  11 HIGIIMDGNGRWAKNKNKIRSFGHKEGAERVIDIVEESYRLGVKYLTLYAFSTENWKRPADEVGY-----LMTLLNSfiD 85
Cdd:PTZ00349  22 HISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFlfylnLLILINE--D 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771  86 KKLKRLHENGVKINVLGDIDRLDDGTFKSVKKAIETTKDNKKMVLNIALSYGGRAE-----------------------I 142
Cdd:PTZ00349 100 FFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEmslckfnpnlyfdtyknlleekkI 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551693771 143 VRASKLIARDYKDG---------------------------------------KLNLEDITEDSFNDFLYTKDIPPVDLL 183
Cdd:PTZ00349 180 LCGSNILTDPIKEGtfaipddedecdyldheleneridldlkfdgdcicgeksFLNEEQIEIVNYHKKLLTSDLPPPNIL 259

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 551693771 184 IRPGGEKRISNFLLYQLA-YAEFIFVDTLWPDFREENLREAILEY 227
Cdd:PTZ00349 260 IRTSGEKRLSDFMLYQISeFTEIYFINEYWPIFNFLQFIYIILHY 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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