NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|551108493|gb|ERT39607|]
View 

hypothetical protein HMPREF1540_00150 [Fusobacterium nucleatum CTI-3]

Protein Classification

ferredoxin family protein( domain architecture ID 10006444)

ferredoxin-like protein that may be a iron-sulfur cluster-containing protein which mediates electron transfer

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Fer4_8 super family cl19102
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 4-94 4.36e-24

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


The actual alignment was detected with superfamily member PRK15449:

Pssm-ID: 473136 [Multi-domain]  Cd Length: 95  Bit Score: 87.29  E-value: 4.36e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551108493  4 MTIEDKLGLNVFHVDEENSHIdVDKNFTDETEIRKLLLACPAECYK-YIDGKLSFSHLGCLECGTCRVLSHGKIVKSWKH 82
Cdd:PRK15449  5 VNVDVKLGVNKFNVDEEHPHI-VVKADADKQALELLVKACPAGLYKkQDDGSVRFDYAGCLECGTCRILGLGSALEQWEY 83

                        90
                ....*....|..
gi 551108493 83 PIGEVGVTFRQG 94
Cdd:PRK15449 84 PRGTFGVEFRYG 95
 
Name Accession Description Interval E-value
PRK15449 PRK15449
ferredoxin-like protein FixX; Provisional
 4-94 4.36e-24

ferredoxin-like protein FixX; Provisional


Pssm-ID: 185346 [Multi-domain]  Cd Length: 95  Bit Score: 87.29  E-value: 4.36e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551108493  4 MTIEDKLGLNVFHVDEENSHIdVDKNFTDETEIRKLLLACPAECYK-YIDGKLSFSHLGCLECGTCRVLSHGKIVKSWKH 82
Cdd:PRK15449  5 VNVDVKLGVNKFNVDEEHPHI-VVKADADKQALELLVKACPAGLYKkQDDGSVRFDYAGCLECGTCRILGLGSALEQWEY 83

                        90
                ....*....|..
gi 551108493 83 PIGEVGVTFRQG 94
Cdd:PRK15449 84 PRGTFGVEFRYG 95
FixX COG2440
Ferredoxin-like protein FixX [Energy production and conversion];
10-94 7.19e-23

Ferredoxin-like protein FixX [Energy production and conversion];


Pssm-ID: 441981 [Multi-domain]  Cd Length: 87  Bit Score: 83.71  E-value: 7.19e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551108493 10 LGLNVFHVDEENSHIDVDKN--FTDETEIRKLLLACPAECYKYI-DGKLSFSHLGCLECGTCRVL-SHGKIVksWKHPIG 85
Cdd:COG2440   1 LFLNNYNVDEDQPHIKVKDPdiCIARCLAKPCTRYCPAGVYEIVgDGRLQINYENCLECGTCRIKcPTQNIT--WVYPEG 78


                ....*....
gi 551108493 86 EVGVTFRQG 94
Cdd:COG2440  79 GGGVNYRFG 87
 
Name Accession Description Interval E-value
PRK15449 PRK15449
ferredoxin-like protein FixX; Provisional
 4-94 4.36e-24

ferredoxin-like protein FixX; Provisional


Pssm-ID: 185346 [Multi-domain]  Cd Length: 95  Bit Score: 87.29  E-value: 4.36e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551108493  4 MTIEDKLGLNVFHVDEENSHIdVDKNFTDETEIRKLLLACPAECYK-YIDGKLSFSHLGCLECGTCRVLSHGKIVKSWKH 82
Cdd:PRK15449  5 VNVDVKLGVNKFNVDEEHPHI-VVKADADKQALELLVKACPAGLYKkQDDGSVRFDYAGCLECGTCRILGLGSALEQWEY 83

                        90
                ....*....|..
gi 551108493 83 PIGEVGVTFRQG 94
Cdd:PRK15449 84 PRGTFGVEFRYG 95
FixX COG2440
Ferredoxin-like protein FixX [Energy production and conversion];
10-94 7.19e-23

Ferredoxin-like protein FixX [Energy production and conversion];


Pssm-ID: 441981 [Multi-domain]  Cd Length: 87  Bit Score: 83.71  E-value: 7.19e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551108493 10 LGLNVFHVDEENSHIDVDKN--FTDETEIRKLLLACPAECYKYI-DGKLSFSHLGCLECGTCRVL-SHGKIVksWKHPIG 85
Cdd:COG2440   1 LFLNNYNVDEDQPHIKVKDPdiCIARCLAKPCTRYCPAGVYEIVgDGRLQINYENCLECGTCRIKcPTQNIT--WVYPEG 78


                ....*....
gi 551108493 86 EVGVTFRQG 94
Cdd:COG2440  79 GGGVNYRFG 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH