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Conserved domains on  [gi|551100823|gb|ERT32135|]
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hypothetical protein HMPREF1766_02154 [Fusobacterium nucleatum CTI-5]

Protein Classification

DUF3800 domain-containing protein( domain architecture ID 10577409)

DUF3800 domain-containing protein similar to Shewanella oneidensis phage P1-related protein in restriction modification operon RflA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3800 pfam12686
Protein of unknown function (DUF3800); This family of proteins is functionally uncharacterized. ...
 107-191 9.72e-04

Protein of unknown function (DUF3800); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.


:

Pssm-ID: 463671  Cd Length: 112  Bit Score: 37.61  E-value: 9.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551100823  107 ILYNYFIKLLVKRLATLNLITSQANLIIKLDNKTIKVGSINTLEEYLQGefYFDTKINLDKVYYVDSANNFEIQLADFIC 186
Cdd:pfam12686  29 LLERVEKFLKKRIFDNDLEEQDDYNIIIVDDEKDEKNSLLLRLIRYLLT--GLRKLLAGESIRFVDSKNSPGLQLADLVA 106


                  ....*
gi 551100823  187 NYYWR 191
Cdd:pfam12686 107 GAIFR 111
 
Name Accession Description Interval E-value
DUF3800 pfam12686
Protein of unknown function (DUF3800); This family of proteins is functionally uncharacterized. ...
 107-191 9.72e-04

Protein of unknown function (DUF3800); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.


Pssm-ID: 463671  Cd Length: 112  Bit Score: 37.61  E-value: 9.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551100823  107 ILYNYFIKLLVKRLATLNLITSQANLIIKLDNKTIKVGSINTLEEYLQGefYFDTKINLDKVYYVDSANNFEIQLADFIC 186
Cdd:pfam12686  29 LLERVEKFLKKRIFDNDLEEQDDYNIIIVDDEKDEKNSLLLRLIRYLLT--GLRKLLAGESIRFVDSKNSPGLQLADLVA 106


                  ....*
gi 551100823  187 NYYWR 191
Cdd:pfam12686 107 GAIFR 111
 
Name Accession Description Interval E-value
DUF3800 pfam12686
Protein of unknown function (DUF3800); This family of proteins is functionally uncharacterized. ...
 107-191 9.72e-04

Protein of unknown function (DUF3800); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.


Pssm-ID: 463671  Cd Length: 112  Bit Score: 37.61  E-value: 9.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551100823  107 ILYNYFIKLLVKRLATLNLITSQANLIIKLDNKTIKVGSINTLEEYLQGefYFDTKINLDKVYYVDSANNFEIQLADFIC 186
Cdd:pfam12686  29 LLERVEKFLKKRIFDNDLEEQDDYNIIIVDDEKDEKNSLLLRLIRYLLT--GLRKLLAGESIRFVDSKNSPGLQLADLVA 106


                  ....*
gi 551100823  187 NYYWR 191
Cdd:pfam12686 107 GAIFR 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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