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Conserved domains on  [gi|548858400|gb|ERN16181|]
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hypothetical protein AMTR_s00030p00234860 [Amborella trichopoda]

Protein Classification

ovate family transcription repressor( domain architecture ID 10522021)

ovate family transcription repressor controls multiple aspects of plant growth and development

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ovate pfam04844
Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, ...
 113-166 1.32e-28

Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development.


:

Pssm-ID: 461454  Cd Length: 58  Bit Score: 100.71  E-value: 1.32e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 548858400  113 SENPYIDFSRSMVQMIVEKEIYDQDELRELLRCFLSLNSKEHHETIIRAFAGIC 166
Cdd:pfam04844   1 SEDPYEDFRRSMEEMIAENGIGDWEDLEELLFCYLSLNSKEHHKLIVEAFVDLW 54
 
Name Accession Description Interval E-value
Ovate pfam04844
Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, ...
 113-166 1.32e-28

Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development.


Pssm-ID: 461454  Cd Length: 58  Bit Score: 100.71  E-value: 1.32e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 548858400  113 SENPYIDFSRSMVQMIVEKEIYDQDELRELLRCFLSLNSKEHHETIIRAFAGIC 166
Cdd:pfam04844   1 SEDPYEDFRRSMEEMIAENGIGDWEDLEELLFCYLSLNSKEHHKLIVEAFVDLW 54
A_thal_3678 TIGR01568
uncharacterized plant-specific domain TIGR01568; This model describes an uncharacterized ...
 107-166 6.02e-23

uncharacterized plant-specific domain TIGR01568; This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.


Pssm-ID: 130631  Cd Length: 66  Bit Score: 86.27  E-value: 6.02e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 548858400  107 VAVVTTSENPYIDFSRSMVQMIVEKEIY-DQDELRELLRCFLSLNSKEHHETIIRAFAGIC 166
Cdd:TIGR01568   1 VAVAKESDDPYEDFRRSMEEMIEERELEaDWKELEELLACYLDLNPKKSHRFIVRAFVDIL 61
 
Name Accession Description Interval E-value
Ovate pfam04844
Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, ...
 113-166 1.32e-28

Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development.


Pssm-ID: 461454  Cd Length: 58  Bit Score: 100.71  E-value: 1.32e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 548858400  113 SENPYIDFSRSMVQMIVEKEIYDQDELRELLRCFLSLNSKEHHETIIRAFAGIC 166
Cdd:pfam04844   1 SEDPYEDFRRSMEEMIAENGIGDWEDLEELLFCYLSLNSKEHHKLIVEAFVDLW 54
A_thal_3678 TIGR01568
uncharacterized plant-specific domain TIGR01568; This model describes an uncharacterized ...
 107-166 6.02e-23

uncharacterized plant-specific domain TIGR01568; This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.


Pssm-ID: 130631  Cd Length: 66  Bit Score: 86.27  E-value: 6.02e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 548858400  107 VAVVTTSENPYIDFSRSMVQMIVEKEIY-DQDELRELLRCFLSLNSKEHHETIIRAFAGIC 166
Cdd:TIGR01568   1 VAVAKESDDPYEDFRRSMEEMIEERELEaDWKELEELLACYLDLNPKKSHRFIVRAFVDIL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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