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Conserved domains on  [gi|544629752|ref|WP_021065540|]
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MULTISPECIES: NifU N-terminal domain-containing protein [Exiguobacterium]

Protein Classification

NifU family protein( domain architecture ID 10555192)

NifU family protein may have a role in the biogenesis of Fe/S proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nfu_N pfam08712
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 2-76 1.05e-20

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


:

Pssm-ID: 462574  Cd Length: 81  Bit Score: 77.51  E-value: 1.05e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 544629752   2 LRIDPTPNPNAMKITLPENVF-GAKSQSVKAGEETDQ-PLLAKLVAIEGVESVFAYGDFVTVSKENGVSWETILPHV 76
Cdd:pfam08712  1 IQTEPTPNPNALKFIPGKPLLpEGGTAEFKSAEEAKAsPLAQKLFAIPGVKSVFIGPDFITVTKDDDVDWEDLKPEV 77
 
Name Accession Description Interval E-value
Nfu_N pfam08712
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 2-76 1.05e-20

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


Pssm-ID: 462574  Cd Length: 81  Bit Score: 77.51  E-value: 1.05e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 544629752   2 LRIDPTPNPNAMKITLPENVF-GAKSQSVKAGEETDQ-PLLAKLVAIEGVESVFAYGDFVTVSKENGVSWETILPHV 76
Cdd:pfam08712  1 IQTEPTPNPNALKFIPGKPLLpEGGTAEFKSAEEAKAsPLAQKLFAIPGVKSVFIGPDFITVTKDDDVDWEDLKPEV 77
Nfu_N smart00932
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 3-79 7.80e-19

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


Pssm-ID: 214919  Cd Length: 88  Bit Score: 72.94  E-value: 7.80e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544629752    3 RIDPTPNPNAMKITLPENVFGAKSQSVKAGEETDQ--PLLAKLVAIEGVESVFAYGDFVTVSKENGVSWETILPHVETA 79
Cdd:smart00932  2 QTEPTPNPNTLKFLPGEFVLPGGSAEFKSADEAAEasPLAQKLFEIPGVKSVFFGPDFITVTKYPDVDWEDLKPEVLSV 80
 
Name Accession Description Interval E-value
Nfu_N pfam08712
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 2-76 1.05e-20

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


Pssm-ID: 462574  Cd Length: 81  Bit Score: 77.51  E-value: 1.05e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 544629752   2 LRIDPTPNPNAMKITLPENVF-GAKSQSVKAGEETDQ-PLLAKLVAIEGVESVFAYGDFVTVSKENGVSWETILPHV 76
Cdd:pfam08712  1 IQTEPTPNPNALKFIPGKPLLpEGGTAEFKSAEEAKAsPLAQKLFAIPGVKSVFIGPDFITVTKDDDVDWEDLKPEV 77
Nfu_N smart00932
Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU ...
 3-79 7.80e-19

Scaffold protein Nfu/NifU N terminal; This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.


Pssm-ID: 214919  Cd Length: 88  Bit Score: 72.94  E-value: 7.80e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544629752    3 RIDPTPNPNAMKITLPENVFGAKSQSVKAGEETDQ--PLLAKLVAIEGVESVFAYGDFVTVSKENGVSWETILPHVETA 79
Cdd:smart00932  2 QTEPTPNPNTLKFLPGEFVLPGGSAEFKSADEAAEasPLAQKLFEIPGVKSVFFGPDFITVTKYPDVDWEDLKPEVLSV 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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