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Conserved domains on  [gi|543996577|ref|WP_021034684|]
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virulence-associated protein VapD [Haemophilus influenzae]

Protein Classification

VapD family protein( domain architecture ID 10007178)

VapD family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VapD COG3309
Virulence-associated protein VapD, endoribonuclease [Defense mechanisms];
1-92 4.39e-42

Virulence-associated protein VapD, endoribonuclease [Defense mechanisms];


:

Pssm-ID: 442538  Cd Length: 98  Bit Score: 132.81  E-value: 4.39e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 543996577  1 MYAIAFDLVVKDTQD-YHPKGVQQAYTDIGAVLAKFGFVRTQGSLY-TNTNEDMANLFQAMNEL-KQLAWISQSVRDIRA 77
Cdd:COG3309   1 MYAIAFDLDTNCLKKhYHGESYNNAYADIRKVLEKHGFEWTQGSVYlSDEGINAAHLVLAIQELaKQFSWFKPSVRDIRA 80

                        90
                ....*....|....*
gi 543996577 78 FRIEQWSDFTDFIRS 92
Cdd:COG3309  81 FRIEEWSDLTFIVKG 95
 
Name Accession Description Interval E-value
VapD COG3309
Virulence-associated protein VapD, endoribonuclease [Defense mechanisms];
1-92 4.39e-42

Virulence-associated protein VapD, endoribonuclease [Defense mechanisms];


Pssm-ID: 442538  Cd Length: 98  Bit Score: 132.81  E-value: 4.39e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 543996577  1 MYAIAFDLVVKDTQD-YHPKGVQQAYTDIGAVLAKFGFVRTQGSLY-TNTNEDMANLFQAMNEL-KQLAWISQSVRDIRA 77
Cdd:COG3309   1 MYAIAFDLDTNCLKKhYHGESYNNAYADIRKVLEKHGFEWTQGSVYlSDEGINAAHLVLAIQELaKQFSWFKPSVRDIRA 80

                        90
                ....*....|....*
gi 543996577 78 FRIEQWSDFTDFIRS 92
Cdd:COG3309  81 FRIEEWSDLTFIVKG 95
 
Name Accession Description Interval E-value
VapD COG3309
Virulence-associated protein VapD, endoribonuclease [Defense mechanisms];
1-92 4.39e-42

Virulence-associated protein VapD, endoribonuclease [Defense mechanisms];


Pssm-ID: 442538  Cd Length: 98  Bit Score: 132.81  E-value: 4.39e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 543996577  1 MYAIAFDLVVKDTQD-YHPKGVQQAYTDIGAVLAKFGFVRTQGSLY-TNTNEDMANLFQAMNEL-KQLAWISQSVRDIRA 77
Cdd:COG3309   1 MYAIAFDLDTNCLKKhYHGESYNNAYADIRKVLEKHGFEWTQGSVYlSDEGINAAHLVLAIQELaKQFSWFKPSVRDIRA 80

                        90
                ....*....|....*
gi 543996577 78 FRIEQWSDFTDFIRS 92
Cdd:COG3309  81 FRIEEWSDLTFIVKG 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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