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Conserved domains on  [gi|543171814|ref|YP_008532087|]
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hypothetical protein P748_gp136 [Klebsiella phage 0507-KN2-1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3268 super family cl13172
zinc-finger-containing domain; This is a family of bacterial and plasmid sequences that carry ...
 2-119 1.58e-50

zinc-finger-containing domain; This is a family of bacterial and plasmid sequences that carry at least one zinc-finger towards the N-terminus and a possible second at the C-terminus.


The actual alignment was detected with superfamily member pfam11672:

Pssm-ID: 431994  Cd Length: 117  Bit Score: 155.97  E-value: 1.58e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 543171814    2 KPVICDYCGKAAILVSGDAIYPHRpdlNRLQFWVCEPCDARVGCHPNTGgIPLGRLANAELRKARNKAHNCFDPLWREGG 81
Cdd:pfam11672   1 SPTRCPYCGSKVILVSASEIYGRS---NGGMLYLCPECGAYVGVHKGTD-IPLGTLANRELRAWRKEAHAAFDPLWQSGP 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 543171814   82 MSRGQAYQWLSEQLGLPKSKCHIGQFDIYTCTKVVGLC 119
Cdd:pfam11672  77 MSRKEAYRWLAGKLGIPKEQAHIGMFDEYQCRQVIREI 114
 
Name Accession Description Interval E-value
DUF3268 pfam11672
zinc-finger-containing domain; This is a family of bacterial and plasmid sequences that carry ...
 2-119 1.58e-50

zinc-finger-containing domain; This is a family of bacterial and plasmid sequences that carry at least one zinc-finger towards the N-terminus and a possible second at the C-terminus.


Pssm-ID: 431994  Cd Length: 117  Bit Score: 155.97  E-value: 1.58e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 543171814    2 KPVICDYCGKAAILVSGDAIYPHRpdlNRLQFWVCEPCDARVGCHPNTGgIPLGRLANAELRKARNKAHNCFDPLWREGG 81
Cdd:pfam11672   1 SPTRCPYCGSKVILVSASEIYGRS---NGGMLYLCPECGAYVGVHKGTD-IPLGTLANRELRAWRKEAHAAFDPLWQSGP 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 543171814   82 MSRGQAYQWLSEQLGLPKSKCHIGQFDIYTCTKVVGLC 119
Cdd:pfam11672  77 MSRKEAYRWLAGKLGIPKEQAHIGMFDEYQCRQVIREI 114
 
Name Accession Description Interval E-value
DUF3268 pfam11672
zinc-finger-containing domain; This is a family of bacterial and plasmid sequences that carry ...
 2-119 1.58e-50

zinc-finger-containing domain; This is a family of bacterial and plasmid sequences that carry at least one zinc-finger towards the N-terminus and a possible second at the C-terminus.


Pssm-ID: 431994  Cd Length: 117  Bit Score: 155.97  E-value: 1.58e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 543171814    2 KPVICDYCGKAAILVSGDAIYPHRpdlNRLQFWVCEPCDARVGCHPNTGgIPLGRLANAELRKARNKAHNCFDPLWREGG 81
Cdd:pfam11672   1 SPTRCPYCGSKVILVSASEIYGRS---NGGMLYLCPECGAYVGVHKGTD-IPLGTLANRELRAWRKEAHAAFDPLWQSGP 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 543171814   82 MSRGQAYQWLSEQLGLPKSKCHIGQFDIYTCTKVVGLC 119
Cdd:pfam11672  77 MSRKEAYRWLAGKLGIPKEQAHIGMFDEYQCRQVIREI 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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