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Conserved domains on  [gi|538283481|gb|AGU99269|]
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cytochrome b, partial (mitochondrion) [Mesoplodon hotaula]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-130 7.04e-100

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 290.77  E-value: 7.04e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00100   8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00100  88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQ 137
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-130 7.04e-100

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 290.77  E-value: 7.04e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00100   8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00100  88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQ 137
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-130 2.17e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 179.10  E-value: 2.17e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   2 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 81
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 538283481  82 MFFICLYAHIGRGLYYGSYI--FQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQ 131
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-130 6.77e-54

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 167.17  E-value: 6.77e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   11 FIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 538283481   91 IGRGLYYG--SYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-130 1.52e-48

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 159.57  E-value: 1.52e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   2 PLMKIINNaFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 81
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 538283481  82 MFFICLYAHIGRGLYYGSY-----IfqeTWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQ 148
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-130 7.04e-100

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 290.77  E-value: 7.04e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00100   8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00100  88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQ 137
CYTB MTH00119
cytochrome b; Provisional
 1-130 2.91e-93

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 273.70  E-value: 2.91e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00119   9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00119  89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQ 138
CYTB MTH00131
cytochrome b; Provisional
 1-130 4.77e-93

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 273.07  E-value: 4.77e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00131   8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00131  88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQ 137
CYTB MTH00074
cytochrome b; Provisional
 1-130 2.32e-92

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 271.55  E-value: 2.32e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00074   9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00074  89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQ 138
CYTB MTH00191
cytochrome b; Provisional
 1-130 6.54e-87

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 257.15  E-value: 6.54e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00191   5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00191  85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQ 134
CYTB MTH00156
cytochrome b; Provisional
 4-130 1.47e-85

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 253.17  E-value: 1.47e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   4 MKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMF 83
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 538283481  84 FICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQ 127
CYTB MTH00034
cytochrome b; Validated
 1-130 2.51e-82

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 245.77  E-value: 2.51e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00034   8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00034  88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQ 137
CYTB MTH00145
cytochrome b; Provisional
 1-130 4.75e-82

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 245.20  E-value: 4.75e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00145   9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00145  89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQ 138
CYTB MTH00016
cytochrome b; Validated
 1-130 6.85e-78

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 234.57  E-value: 6.85e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00016   9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00016  89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQ 138
CYTB MTH00224
cytochrome b; Provisional
 1-130 1.35e-66

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 205.93  E-value: 1.35e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00224   9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00224  89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQ 138
CYTB MTH00022
cytochrome b; Validated
 1-130 1.94e-64

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 200.31  E-value: 1.94e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   1 HPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGA 80
Cdd:MTH00022   7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 538283481  81 SMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00022  87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQ 136
CYTB MTH00053
cytochrome b; Provisional
 2-130 1.01e-62

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 195.70  E-value: 1.01e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   2 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 81
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 538283481  82 MFFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQ 138
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-130 2.17e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 179.10  E-value: 2.17e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   2 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 81
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 538283481  82 MFFICLYAHIGRGLYYGSYI--FQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQ 131
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-130 6.77e-54

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 167.17  E-value: 6.77e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   11 FIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 538283481   91 IGRGLYYG--SYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQ 122
CYTB MTH00033
cytochrome b; Provisional
 9-130 2.35e-51

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 166.65  E-value: 2.35e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   9 NAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLY 88
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 538283481  89 AHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQ 134
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-130 1.52e-48

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 159.57  E-value: 1.52e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   2 PLMKIINNaFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 81
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 538283481  82 MFFICLYAHIGRGLYYGSY-----IfqeTWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQ 148
CYTB MTH00086
cytochrome b; Provisional
 5-130 2.31e-41

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 140.07  E-value: 2.31e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   5 KIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFF 84
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 538283481  85 ICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQ 126
CYTB MTH00046
cytochrome b; Validated
 3-130 4.43e-28

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 105.06  E-value: 4.43e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481   3 LMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASM 82
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 538283481  83 FFICLYAHIGRGLYYGSYIFQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQ 128
PRK03735 PRK03735
cytochrome b6; Provisional
 26-130 2.28e-24

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 92.85  E-value: 2.28e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481  26 FGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAHIGRGLYYGSYI--FQ 103
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                         90       100
                 ....*....|....*....|....*..
gi 538283481 104 ETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGYLLPWDQ 150
petB CHL00070
cytochrome b6
 17-130 1.68e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 74.76  E-value: 1.68e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 538283481  17 PSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAHIGRGLY 96
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 538283481  97 YGSYI--FQETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:CHL00070 107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQ 142
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-130 3.36e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 54.56  E-value: 3.36e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 538283481   81 SMFFICLYAHIGRGLYYGSYIF--QETWNIGVILLFTVMATAFVGYVLPWGQ 130
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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