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Conserved domains on  [gi|537421488|gb|AGU68776|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Ptilinopus cinctus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-292 1.76e-144

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.60  E-value: 1.76e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   1 MSPYAKLISILSLLLGTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 161 SAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 241 NATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFF 292
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-292 1.76e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.60  E-value: 1.76e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   1 MSPYAKLISILSLLLGTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 161 SAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 241 NATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFF 292
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 16-270 5.73e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 126.00  E-value: 5.73e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLIS-KSHHPRAIEATIKYFLVQATASALLLF--------------SSMSNAWS 80
Cdd:COG1007  114 GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIAAALA 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLThpTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLK----FPPITILFLTSHSLNP---TL 153
Cdd:COG1007  194 AGGANSPLLL--LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 154 LTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWM--AIITTYNPNLTLLTFYL--YTLMTTTVFLTLNT-TKVLKLV 228
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLlSRKGGEA 351

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 537421488 229 TMMTSW----TKTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1007  352 EEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.63e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 2.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   23 SNHWVMAWAGLEINTLAIIPLI-SKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   91 HPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGS----SMIIALLLSTTLKFPPITILFLTSHSLN--PTLLTTMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAptpvSALLAATLVKAGGYGLIRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  165 GGWMGLNQTQIRKILAFSSISHMGWMAII----TTYNPNLTLLTFYLYTLMTTTVFL-----TLNTTKVLKLVTMMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAlgagTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 537421488  236 KTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 16-292 1.20e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 1.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   16 GTTITISSNHWVMAWAGLEINTLAIIPLIS-KSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTHPTS 94
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   95 C------------LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLK---FPPITILFLTS----HSLNPTLLT 155
Cdd:TIGR01770 194 NgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  156 TMAILSAALGGWMGLNQTQIRKILAFSSISHMGW--MAIITTYNPNLTLLTFYL--YTLMTTTVFLTLNTTKVLKLV--- 228
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKDEwie 353

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 537421488  229 --TMMTSWTKT-PMLNATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:TIGR01770 354 yiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-292 1.76e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 409.60  E-value: 1.76e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   1 MSPYAKLISILSLLLGTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 161 SAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 241 NATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFF 292
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-292 6.69e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 347.18  E-value: 6.69e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   1 MSPYAKLISILSLLLGTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSlNPTLLTTMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 161 SAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 241 NATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYF 291
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-292 1.78e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 341.13  E-value: 1.78e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   1 MSPYAKLISILSLLLGTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTTMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 161 SAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 241 NATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFF 292
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-292 1.42e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 316.02  E-value: 1.42e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   1 MSPYAKLISILSLLLGTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTTMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 161 SAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 241 NATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYF 292
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-292 2.37e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 259.52  E-value: 2.37e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   1 MSPYAKLISILSLLLGTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTTMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 161 SAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 241 NATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFF 292
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 16-292 1.49e-82

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 252.16  E-value: 1.49e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTHPTSC 95
Cdd:MTH00041  16 GTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTTMAILSAALGGWMGLNQTQI 175
Cdd:MTH00041  96 IIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQT 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 176 RKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPMLNATLMLVLLSLAGLP 255
Cdd:MTH00041 176 RKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLP 255

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 537421488 256 PLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00041 256 PLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFF 292
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-292 9.98e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 188.11  E-value: 9.98e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   1 MSPYAKLISILSLLLGTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGqwditqLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILfltSHSLNPTLLTTMAIL 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 161 SAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 241 NATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYF 284
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 16-292 6.05e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 167.76  E-value: 6.05e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITqlthptsc 95
Cdd:MTH00144  16 GTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM-------- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPI-TILFLTSHSLNPTLLTTMAILSAALGGWMGLNQTQ 174
Cdd:MTH00144  88 SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQ 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 175 IRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNtTKVLKLVTMMTSWTKTPMLNATLMLVLLSLAGL 254
Cdd:MTH00144 168 VRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLSIISLLLSLGGL 246

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 537421488 255 PPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00144 247 PPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFF 284
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 16-292 6.73e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 162.64  E-value: 6.73e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSmsnawsTGQWDITQLTHPTSC 95
Cdd:MTH00011  18 GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTTMAILSAALGGWMGLNQTQI 175
Cdd:MTH00011  92 LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 176 RKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPMLNATLMLVLLSLAGLP 255
Cdd:MTH00011 172 RPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLP 251

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 537421488 256 PLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00011 252 PFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFY 288
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 16-292 3.17e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.41  E-value: 3.17e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTgqwditqLTHPTSC 95
Cdd:MTH00197  10 GVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLLSV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHslNPTLLTTMAILSAALGGWMGLNQTQI 175
Cdd:MTH00197  83 VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 176 RKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPMLNATLMLVLLSLAGLP 255
Cdd:MTH00197 161 RQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLP 240

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 537421488 256 PLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:MTH00197 241 PLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYY 277
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 16-270 5.73e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 126.00  E-value: 5.73e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLIS-KSHHPRAIEATIKYFLVQATASALLLF--------------SSMSNAWS 80
Cdd:COG1007  114 GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIAAALA 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  81 TGQWDITQLThpTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLK----FPPITILFLTSHSLNP---TL 153
Cdd:COG1007  194 AGGANSPLLL--LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 154 LTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWM--AIITTYNPNLTLLTFYL--YTLMTTTVFLTLNT-TKVLKLV 228
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLlSRKGGEA 351

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 537421488 229 TMMTSW----TKTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1007  352 EEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-267 3.82e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 115.11  E-value: 3.82e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLIS-KSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDI----TQLT 90
Cdd:MTH00199 109 GSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILT 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  91 HPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPTLLTtmAILSAALGGWMGL 170
Cdd:MTH00199 189 GDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGAL 266

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 171 NQTQIRKILAFSSISHMGW----MAIITTYNPNLTLLTFYLYTLMTTTVF---LTLNTTKVLkLVTMMTSWTKTPMLNAT 243
Cdd:MTH00199 267 NQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVIALT 345

                        250       260
                 ....*....|....*....|....
gi 537421488 244 LMLVLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 346 LALTFLSIAGIPPLAGFLSKWLIL 369
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-267 2.03e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 111.66  E-value: 2.03e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLI-SKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDI-------- 86
Cdd:MTH00196   5 GILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvln 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  87 -----TQLTHPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFltSHSLNPTLLTTMAILS 161
Cdd:MTH00196  85 sgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 162 AALGGWMGLNQTQIRKILAFSSISHMGW----MAIITTYNPNLTLLTFYLYTLMTTTVF---LTLNTTKVLkLVTMMTSW 234
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFSGLS 241

                        250       260       270
                 ....*....|....*....|....*....|...
gi 537421488 235 TKTPMLNATLMLVLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
16-268 9.80e-28

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 111.45  E-value: 9.80e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLIS-KSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTHPTS 94
Cdd:PRK05777 115 GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALA 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  95 ------------CLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLK---FPPIT----ILFLTSHSLNPTLLT 155
Cdd:PRK05777 195 dgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrllvVAFGGLSEDWQQVLA 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 156 TMAILSAALGGWMGLNQTQIRKILAFSSISHMGWM---AIITTYNPNLTLLtFYL--YTLMTTTVFLTLNT-TKVLKLVT 229
Cdd:PRK05777 275 IIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvgLAAGTAEGYSAVL-FYLlaYLFMTLGAFGVISLlRRKGGEAE 353

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 537421488 230 MMTSWT----KTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK05777 354 SISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFE 396
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.63e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 2.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   23 SNHWVMAWAGLEINTLAIIPLI-SKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   91 HPTSCLLLTIAIAMKLGLVPFHFWFPEVLQGS----SMIIALLLSTTLKFPPITILFLTSHSLN--PTLLTTMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAptpvSALLAATLVKAGGYGLIRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  165 GGWMGLNQTQIRKILAFSSISHMGWMAII----TTYNPNLTLLTFYLYTLMTTTVFL-----TLNTTKVLKLVTMMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAlgagTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 537421488  236 KTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 16-292 1.20e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 1.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   16 GTTITISSNHWVMAWAGLEINTLAIIPLIS-KSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTHPTS 94
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   95 C------------LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLK---FPPITILFLTS----HSLNPTLLT 155
Cdd:TIGR01770 194 NgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  156 TMAILSAALGGWMGLNQTQIRKILAFSSISHMGW--MAIITTYNPNLTLLTFYL--YTLMTTTVFLTLNTTKVLKLV--- 228
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKDEwie 353

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 537421488  229 --TMMTSWTKT-PMLNATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLFF 292
Cdd:TIGR01770 354 yiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-291 4.33e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 92.13  E-value: 4.33e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  30 WAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTH----------PTSCLLLT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 100 IAIAMKLGLVPFHFWFPEVLQGSSMIIALLLS--------------TTLKFPPITILFLTshslnpTLLTTMAILSAALG 165
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSglltkvgvyailrvLTLLFGADPALFLG------TLLLVLGLLTMLVG 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 166 GWMGLNQTQIRKILAFSSISHMGWMAI-ITTYNPN-LTLLTFYL--YTLMTTTVFLT----LNTTKVLKLVTMMTSWTKT 237
Cdd:COG0651  287 ALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRM 366

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 537421488 238 PMLNATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLF 291
Cdd:COG0651  367 PLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-267 1.35e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 91.46  E-value: 1.35e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAI---------EATIKYFLVQATASALLLFSSMSNAWSTGQ--- 83
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegm 279

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  84 -WDITQLTHPTS----------CLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFppITILFLTSHSLNPT 152
Cdd:MTH00198 280 lGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSK 357

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 153 LLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWMAI---ITTY----NPNLTLLTFYLYTLMTTTVFLTL------ 219
Cdd:MTH00198 358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIgvsAGTYeslqASWTYAVTYLVSALASFTVICTLeefgtr 437

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 220 ------------NTTKVLKLVTMMTSWTKTPMLNATLMLVLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 438 tptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 3.97e-19

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 86.98  E-value: 3.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  51 RAIEATIKYFLVQATASALLLFS-SMSNAWSTGQWDI---------TQLTHPTSCLL----LTIAIAMKLGLVPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 117 EVLQGS-----------SMIIALLLSTTLkfppITILFLTSHSLNPTLLTTMAILSAALGGWMGLNQTQIRKILAFSSIS 185
Cdd:CHL00049 239 DVYEGSptpvvaflsvtSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 186 HMGWMAI-ITTYNPNLTLLTFYLYTLmtTTVFLTLNTTKVLKLVTMMT----------SWTKTPMLNATLMLVLLSLAGL 254
Cdd:CHL00049 315 QIGYVIIgIIVGDSNDGYASMITYML--FYIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGI 392


                 ....*....
gi 537421488 255 PPLTGFLPK 263
Cdd:CHL00049 393 PPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 2.48e-15

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 75.86  E-value: 2.48e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  50 PRAIEATIKYFLVQATASALLLF-SSMSNAWSTGQW---DITQLTHPTSCLLLTIA-------IAMKLGLVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTqlsAIALALITSPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 119 LQGSSMIIALLLSTTLKFP--PITILFLTSHSLNPT-----LLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWMA 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfALAIRLLVTAFPSFDeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 192 IITTYNPNLTLLTFYLYtlMTTTVFLTLNTTKVLKLVTMMTS----------WTKTPMLNATLMLVLLSLAGLPPLTGFL 261
Cdd:PRK02504 317 IGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                 ..
gi 537421488 262 PK 263
Cdd:PRK02504 395 GK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-267 3.16e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 66.26  E-value: 3.16e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  38 LAIIP---LISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQW--DITQLTH---PTS-----CLLLTIAIAM 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 105 KLGLVPFHFWFPEVLQ----GSSMIIALLLSTT-----LKFPpITILFLTSHSLNPTLLTtMAILSAALGGWMGLNQTQI 175
Cdd:COG1008  222 KVPMFPFHTWLPDAHVeaptAGSVLLAGVLLKMggyglLRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDL 299

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 176 RKILAFSSISHMGWMAI-ITTYNPN-LTLLTFYL--YTLMTTTVFLTL----NTTKVLKLVTMMTSWTKTPMLNATLMLV 247
Cdd:COG1008  300 KRLIAYSSVSHMGFVLLgIFALNPLgLQGAVLQMvsHGLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFLLA 379

                        250       260
                 ....*....|....*....|
gi 537421488 248 LLSLAGLPPLTGFLPKWLII 267
Cdd:COG1008  380 ALASLGLPGTSGFVGEFLVL 399
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 1.26e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 58.41  E-value: 1.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488   50 PRAIEATIKYFLVQATASALLLFSSMSNAWSTGQW----DITQLTHPTSC-----LLLTIAIAMKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  120 QGSSMIIALLLSTTLKFPPITI------LFLTSHSLNPTLLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWMAI- 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLg 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  193 ITTYNP---NLTLLTFYLYTLMTTTVFLTLNT----TKVLKLVTMMTSWTKTPMLNATLMLVLLSLAGLPPLTGFLPKWL 265
Cdd:TIGR01972 312 IFSFNElgiSGAVFQMISHGLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  ...
gi 537421488  266 IIQ 268
Cdd:TIGR01972 392 ILL 394
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.73e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.18  E-value: 1.73e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  33 LEINTLAIIPLIS-KSHHPRAIEATIKYFLVQATASALLLFSSmsnAWSTGQWDI-------------TQLTHPTSCLLL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  99 TIAIAMKLGLVPFHFWFPEVL-QGSSMIIALLLstTLKFPPITILFLTSHSL-NPTLLTT--------MAILSAALGGWM 168
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYpAAPSSISAMLL--VIKQAGLYALARVLFSIyGPAINLAtvgwviiiLGCLTMFVGVAM 304

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 169 GLNQTQIRKILAFSSISHMGWMAI-----ITTYNPnlTLLTFYLYTLMTTTVFLTLNTTKVLKLVTM------------- 230
Cdd:PRK08376 305 AVVQKDVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNHALYKALLFLtagaviyetgtrn 382

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 537421488 231 ---MTSWTKT-PMLNATLMLVLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 383 lneLGGLARTmPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-270 5.90e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.43  E-value: 5.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  33 LEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTH--PTSCLLLT------IAIAM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 105 KLGLVPFHFWFPEVLQGSSMIIALLLSTT-----------LKFPPITILFLTSHSLNpTLLTTMAILSAALGGWMGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSGLvtkvavyalirIYFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 174 QIRKILAFSSISHMGWMAI-ITTYNPN-LTLLTFYL--YTLMTTTVFL-------TLNTTKVLKLVTMMTswtKTPMLNA 242
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLgLALLTPLaLAAGLLHLlhHALMKGALFLaagaievTYGTRRLSELSGLGR---RMPLTAA 370

                        250       260
                 ....*....|....*....|....*...
gi 537421488 243 TLMLVLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGA 398
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 95-270 2.45e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 54.77  E-value: 2.45e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  95 CLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTT---------LKFPPITilfltshSLNPTLLTTMAILSAA-- 163
Cdd:COG1009  214 LLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATmvkagvyllARLSPLF-------ALSPVWLTVVAIIGAIta 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 164 -LGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNpNLTLLTFYLYT---------LMTTTVFLTLNTTKVLKLVTMmts 233
Cdd:COG1009  287 lFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG-AYVAALFHLLThaffkallfLGAGSVIHATGTRDIRKMGGL--- 362

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 537421488 234 WTKTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1009  363 RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-268 3.38e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 54.17  E-value: 3.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  20 TISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSS----------MSNAWSTGQW-DITQ 88
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  89 LTHPTSCLLLTIAIAM-------KLGLVPFHFWFPEVLQG-----SSMIIALLLSTTLkFPPITILFLTSHSLNP----T 152
Cdd:PRK06458 204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVAL-YAVLRYYILIDAAIGSdfpgR 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 153 LLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLM----TTTVFLTLNT------T 222
Cdd:PRK06458 283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIFFASGNvlqkygT 362

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 537421488 223 KVLKLVTMMTswTKTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06458 363 RDINVIRGLL--KVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-273 4.71e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 53.85  E-value: 4.71e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  34 EINTLA---IIPLISKshhpRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDIT-------QLTHPTSCLLLTIAIA 103
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 104 ----MKLGLVPFHFWFPE-----------VLQGS---------SMIIALLLSTTLKFPPITIlflTSHSLNPTLLTTMAI 159
Cdd:PRK08668 204 afgvAKAGIFPLHVWAPDayseapqsfsaVLSGQlsklgaygfLLVLYVLPGTKLFSEFGTY---RGVPLFNYILAWLGN 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 160 LSAALGGWMGLNQTQIRKILAFSSISHMGW----MAIITTYNPNLTLLTFYLYTLMTTTVFLTLNT----TKVLKLVTMM 231
Cdd:PRK08668 281 ISIIVGTLMAILQEDIKKLIAYSSVANGGYilvgLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAviyrTGTTKISEMG 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 537421488 232 TSWTKTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQ 273
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISK 402
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-268 7.94e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.03  E-value: 7.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  53 IEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQL-----------THPTSCLLLTIAIAMKLGLVPFhFWFPEVLQG 121
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndmgdtaTLTTIALLFLLAFGMKAALFPF-MWLPAAYHT 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 122 SSMIIALLLSTTLK-------FPPITILFLTSHSLNPTLLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWM-AII 193
Cdd:PRK12663 236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFIlLGL 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 194 TTYNPN-LTLLTFYLYTLMT--TTVFLTLNTTKVL----KLVTMMTSWTKTPMLNATLMLVLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12663 316 ALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395


                 ..
gi 537421488 267 IQ 268
Cdd:PRK12663 396 VQ 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 4.00e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 50.87  E-value: 4.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  55 ATIKYFLVQATASALLLFSSMSNAWSTGQWD------ITQ-LTHPTSCLLLTIAI---AMKLGLVPFHFWFPEVLQGSSM 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 125 IIALLLSTTL-KFPPITI------LFLTSHSLNPTLLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWMAIITTYN 197
Cdd:PRK07363 238 AVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 198 PNLTLL---------------TFYLYTLMTTTVfltlNTTKVLKLVTMMTSWTKTPMLNATLMLVLLSLAGLPPLTGFLP 262
Cdd:PRK07363 318 TQLSLLgavaqmishglilalLFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                 ....*.
gi 537421488 263 KWLIIQ 268
Cdd:PRK07363 394 EFIVFQ 399
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 17-192 4.11e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.91  E-value: 4.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  17 TTITISSNHWVMAWAGLEINTLAIIPLISKSHHPRAIEATIKYFLVQATA------SALLLFSSMSNAWSTGQWDITQLT 90
Cdd:PRK08676 115 ITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELA 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  91 HPT----------SCLLLTIAIAMKLGLVPFHFWFPEV-LQGSSMIIALLLSTTLKFPPITILFLTS-------HSLNPT 152
Cdd:PRK08676 195 AHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSN 274

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 537421488 153 LLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWMAI 192
Cdd:PRK08676 275 VLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 5.27e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 50.34  E-value: 5.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  33 LEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTH--PTSCLLLTIAIAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 111 FHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPT--LLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 189 WMAIITTYNPNLTLLtfylYTLMTTTVFLTLNTTKVLKLvtmmTSWTKTPMLNATLMLVLL---SLAGLPPLTGFLPKWL 265
Cdd:PRK07234 283 FILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNF----TELISQMLGIGKWIPLTMasfSIAGFPLLAGFVSKVL 354


                 ....*.
gi 537421488 266 IIQELT 271
Cdd:PRK07234 355 TLKNLL 360
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-266 8.06e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 50.08  E-value: 8.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  38 LAIIPL---ISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTG-------QWDITQLTHPTSCLLLT---IAIAM 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLApilVGFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 105 KLGLVPFHFWFPEV-LQGSSMIIALLLSTTLKFPPITIL------FLTSHSLNPTLLTTMAILSAALGGWMGLNQTQIRK 177
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 178 ILAFSSISHMGWMAIITTYNPNLTL-----------LTFYLYTLMTTTVFLTLNTTKVLKLVTMMTSWTKTPMLNATLML 246
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSIlaavfqmishgLISALLFLLVGVVYKKTGSRDVDVLRGLLNPERGLPITGSLMIL 377

                        250       260
                 ....*....|....*....|
gi 537421488 247 VLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLV 397
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 1.44e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.05  E-value: 1.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  50 PRAIEATIKYFLVQATASALLLFSSM----SNAWSTGQWDITQLTHPTSC--------LLLTIAIAMKLGLVPFHFWFP- 116
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPd 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 117 ---EVLQGSSMIIALLLSTT-----LKFPpITILFLTSHSLNPtLLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMG 188
Cdd:PRK05846 237 ahvQAPTAGSVLLAGILLKMgayglLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                 ....
gi 537421488 189 WMAI 192
Cdd:PRK05846 315 FVTL 318
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 2.18e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.58  E-value: 2.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITI------------LFLTSHSLNpTLLTTMAILSAA 163
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 164 LGGWMGLNQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLY----TLMTTTVFLT-------LNTTKVLKLVTMmt 232
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL-- 369

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 537421488 233 sWTKTPMLNATLMLVLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 370 -WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 96-268 4.98e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 47.65  E-value: 4.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITIL-----FLTSHSLNPTLLTTMAILSAALGGWMGL 170
Cdd:MTH00032 229 ILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGL 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 171 NQTQIRKILAFSSISHMGWMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTTKVLKLVTM-------MTSWTKTPMLNAT 243
Cdd:MTH00032 309 VQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTVdeqdmrkMGGLIHSIPFTYT 388

                        170       180
                 ....*....|....*....|....*.
gi 537421488 244 LMLV-LLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 389 MMLIgSFSIMGLPYLTGFYSKDLILE 414
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 6.98e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 47.22  E-value: 6.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 109 VPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPT-----LLTTMAILSAALGGWMGLNQTQIRKILAFSS 183
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 184 ISHMGWMAIITTYNPNLTLLTFYLY----TLMTTTVFLTL-------NTTKVLKLVTMmtsWTKTPMLNATLMLVLLSLA 252
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAgiidhetGTRDITKLGGL---RRAMPITAAAALLAALSMA 368

                        170
                 ....*....|....
gi 537421488 253 GLPPLTGFLPKWLI 266
Cdd:PRK12647 369 GLPPLFGFLAKELI 382
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 1.20e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 46.18  E-value: 1.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  34 EINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQ-----LTHPTS------CLLLTIAI 102
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSpviyggLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 103 AMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILF--------LTSHSLNPTLLTTMAILSAALGGWMGLNQTQ 174
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 175 IRKILAFSSISHMGW----MAIITTYNPNLTLLTFYLYTLMTTTVFL----TLNTTKVLKLVTMMTSWTKTPMLNATLML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYvaagLALGTPLGIVAGIFHAINHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260
                 ....*....|....*....|..
gi 537421488 247 VLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 75-268 1.33e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 46.30  E-value: 1.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  75 MSNAWSTGQ--WDITQLTH----PTSCLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITIL-----F 143
Cdd:MTH00207 156 LSIGWTLNQghWSITNMWQtdmnNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypF 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 144 LTSHSLNPTLLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMG-WMAIITTYNPNLTLLTFYLYTLMTTTVFLTLNTT 222
Cdd:MTH00207 236 LSSTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSL 315

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 537421488 223 KVLK-----LVTMMTSWTKTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207 316 IHSHhhsqdLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 2.97e-05

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 45.20  E-value: 2.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTT-LKFPPITILFLTSHSLNPTL-----LTTMAILSAALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 170 LNQTQIRKILAFSSISHMGWMAI--------ITTYNPNLTLLTFY--LY-----TLMTTTVFLTLNT----TKVLKLVTM 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGIILLglgagvtgIALEQPALIALGLVggLYhllnhSLFKSVLFLGAGSvwfrTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 537421488 231 MTSWTKTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 3.29e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 45.07  E-value: 3.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  95 CLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITIL-----FLTSHSLNPTLLTTMAILSAALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLirsspLFEQAPLALIIVTIVGSLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 170 LNQTQIRKILAFSSISHMGWMAIITtynpNLTLLTFYLYTLMTTTVF---LTLNTTKVLKLVT------MMTSWTKTPML 240
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVAC----GLSHYSISLFHLMNHAFFkalLFLSAGSVIHALSdeqdmrKMGGLISFLPL 368

                        170       180
                 ....*....|....*....|....*....
gi 537421488 241 NATLMLV-LLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020 369 TYIFFLIgSLSLMGFPYLTGFYSKDLILE 397
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-268 3.70e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 44.96  E-value: 3.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  32 GLEINTLAIIPLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQL----------THPTSCLLLTIA 101
Cdd:PRK12665 139 GFEILLVASYVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldelpsgTRTALFAVLLVA 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 102 IAMKLGLVPFHFWFPE-----------VLQG---SSMIIALLLSTTLKFPpitilfltSHSLNpTLLTTMAILSAALGGW 167
Cdd:PRK12665 219 FGIKAAVFPLSFWLPDsyptapapvtaVFAGlltKVGVYAIIRTHTLLFP--------GGGLD-TLLMVVALLTMVVGIL 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 168 MGLNQTQIRKILAFSSISHMGWMAI-ITTYNP-NLTLLTFYL--YTLMTTTVFLtlnttkVLKLVTMMTSWTK------- 236
Cdd:PRK12665 290 GAIAQSDIKRLLSFTLVSHIGYMVFgIALSTVaGLSGAIYYVahHITVQTTLFL------VVGLIERQAGSSSlrrlggl 363

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 537421488 237 ---TPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 364 akaSPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 5.76e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.43  E-value: 5.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  48 HHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTHPTSCL--------------LLTIAIAMKLGLVPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplflitliLIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 114 WFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNPT-----LLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 189 WMAII----TTYNPNLTLL--TFYLYTLMTTTVFLTL---------NTTKVLKLVTMMTSWTKTPMLNAtlmLVLLSLAG 253
Cdd:PRK12649 316 YLMTMygytTYHEPGLGVAaaTFHLLNHATFKACLFLvagivaheaATRDIRKLGGLRKEMPITFIVAS---IAALAMAG 392

                        250
                 ....*....|
gi 537421488 254 LPPLTGFLPK 263
Cdd:PRK12649 393 IPPLNGFLSK 402
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 6.29e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.34  E-value: 6.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  55 ATIKYFLVQATASALLLFSSMSNAWSTGQWDITQLTHPT-----SCLLLTIAIAMKLGLVPFHFWFPEVLQGS-SMIIAL 128
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSAL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 129 LLSTTLKFPPITILFLTSHSLNP-----TLLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMG--------WMAIITT 195
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 196 YNPNLTLLTF-------YLYTLMTTTVFLT----LNTTKVLKLVTMMTSWTKTPMLNATLMLVLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667 323 GLDTLALLALggalfhsLNHALFKSLLFLTagsvVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402


                 ....*.
gi 537421488 265 LIIQEL 270
Cdd:PRK08667 403 LLYESF 408
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 16-270 9.56e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.63  E-value: 9.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  16 GTTITISSNHWVMAWAGLEINTLA---IIPLISKSHHPRAIeatikyFLVQATASALLLFSSMSNAWS-TGQWDITQLTH 91
Cdd:PRK06459  84 GMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTTNFSYLPS 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  92 PTSCLLLTIAIAMKLGLVPFHF--WFPEVLQGSSMIIALLLSTTLK----FPPITILFLTSHS-LNPTLLTTMAI--LSA 162
Cdd:PRK06459 158 PVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTlmgvYGILKMTILTQTIpIGYFGLTILAIgaFSI 237

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 163 ALGGWMGLNQTQIRKILAFSSISHMGWM-----AIITTYNPNLTLLTFYLYTLMT---------TTVFLTLNTTKVLKLV 228
Cdd:PRK06459 238 LFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILysfahsvakTGLFLSSGLQEKQSIT 317

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 537421488 229 TMMTSWTKTPMLNATLMLvlLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 318 YSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESL 357
PRK12650 PRK12650
DUF4040 family protein;
97-263 2.52e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 42.34  E-value: 2.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  97 LLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITIL--FLTSHSLNPT---LLTTMAILSAALGGWMGLN 171
Cdd:PRK12650 213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrFSPVFHDVAVwnwLLIIVGMITALMGAVFAVQ 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 172 QTQIRKILAFSSISHMGWM-AII---TTYNPNLTLLTFYLYTLMTTTVFLTL----NTTKVLKLVTMMTSWTKTPMLNAT 243
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWIvATIgvgTPFALTAAVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVS 372

                        170       180
                 ....*....|....*....|
gi 537421488 244 LMLVLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 373 VTIAALSMAAVPPLFGFVSK 392
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 2.84e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 2.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  55 ATIKYFLVQATASALLLFSSMSNAWSTGQ--WDITQLTH---PTSCLLLT-----IAIAMKLGLVPFHFWFP----EVLQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPdahgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 537421488 121 GSSMIIALLLSTTLKFPPITI---LFLTSHSLNPTLLTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWMAI 192
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-267 4.42e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.45  E-value: 4.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 100 IAIAMKLGLVPFHFWFPEV-----LQGSSMIIALLLS------TTLKFPpitILFLTSHSLNPTLLtTMAILSAALGGWM 168
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFA 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 169 GLNQTQIRKILAFSSISHMGwMAIITTYNPNLTLLTFYLYTLMT-----------TTVFLTLNTTKVLKLVTMMTswTKT 237
Cdd:MTH00226 314 TCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLAhgivssllfilVTILYDRHHTRLIKYYRGLS--ITM 390

                        170       180       190
                 ....*....|....*....|....*....|
gi 537421488 238 PMLNATLMLVLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226 391 PIWGTIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-291 5.68e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 41.09  E-value: 5.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPI-------TILFLTSHSLNPTLLTTMAILSAALGGWM 168
Cdd:PRK07691 213 ILFLFVFATKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVyaiartfTLFFSHDTSFTHYLILILALLTIIFGVIG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 169 GLNQTQIRKILAFSSISHMGWMAI-ITTYNPNLTLLTFYlYT----LMTTTVFL----TLNTTKVLKLVTMMTSWTKTPM 239
Cdd:PRK07691 293 AVAYFDIKKIIIYNIMIAVGVILVgVAMMTESGMIGAIY-YLihdmIVKAALFLligiMIKITGTTDLKKMGGLIKRYPV 371

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 537421488 240 LNATLMLVLLSLAGLPPLTGFLPKWLIIQELTKQEMTTAATTMAMLSLLGLF 291
Cdd:PRK07691 372 LGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLY 423
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-190 6.91e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.84  E-value: 6.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  18 TITISSNHWVM---AWA--GLEINTLaiipLISKSHHPRAIEATIKYFLVQATASALLLFSSMSNAWSTGQWDITQL--- 89
Cdd:PRK08168 114 HLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  90 --THPTS------CLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLS--------TTLKFPPitiLFLTSHSLNpTL 153
Cdd:PRK08168 190 laAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAP---LLEQAPPAR-WL 265

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 537421488 154 LTTMAILSAALGGWMGLNQTQIRKILAFSSISHMGWM 190
Cdd:PRK08168 266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12646 PRK12646
DUF4040 family protein;
96-272 7.26e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.89  E-value: 7.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  96 LLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILF-----LTSHSLNPTLLTTMAILSAALGGWMGL 170
Cdd:PRK12646 214 FMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFrftplLGLSNMYIYIVTFVGLITMLFGSITAL 293

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 171 NQTQIRKILAFSSISHMGWMAIIT------TYNPNLTLLTFY-------LYTLMTTTVFLTL-----------NTTKVLK 226
Cdd:PRK12646 294 KQWDLKGILAYSTISQLGMIMAMVgigggyAQHQQDAIASIYvfvlfaaLFHLMNHAIFKCAlfmgvgiidheAGTRDIR 373

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 537421488 227 LVTMMTSWtkTPMLNATLMLVLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK12646 374 ILSGMRQL--FPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
95-190 1.28e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.01  E-value: 1.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  95 CLLLTIAIAMKLGLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPItilFLTS-----HSLNPTLLTTMAI---LSAALGG 166
Cdd:PRK07376 230 CILVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGV---FLVArmypvFEQFPAVMTVIAWtgaITAFLGA 306

                         90       100
                 ....*....|....*....|....
gi 537421488 167 WMGLNQTQIRKILAFSSISHMGWM 190
Cdd:PRK07376 307 SIALTQNDIKKGLAYSTISQLGYM 330
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 95-271 1.95e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 39.61  E-value: 1.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  95 CLLLTIAIAMKLGLVPFHFWFPEVLQG----SSMIIALLLSTTLKFPPITILFLTSHS-LNPTLLTTMAILSAALGGWMG 169
Cdd:MTH00210 214 CLLLFIGAVGKSAQLGLHTWLPDAMEGptpvSALIHAATMVTAGVFLIIRSGPLFEGSpLALTIVTILGALTAFFAATVG 293

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 170 LNQTQIRKILAFSSISHMGWMAIITtynpNLTLLTFYLYTLMTTTVF---LTLNTTKVLKLVT------MMTSWTKTPML 240
Cdd:MTH00210 294 VVQNDLKKVIAYSTCSQLGYMVMVC----GISNYSTSLFHLMNHAFFkalLFLSAGSVIHAVSdeqdmrKMGGLIKSIPF 369

                        170       180       190
                 ....*....|....*....|....*....|..
gi 537421488 241 NATLMLV-LLSLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00210 370 TYVMILIgSLSLMGFPYLTGFYSKDLIL-ELT 400
ndhD CHL00011
NADH dehydrogenase subunit 4
 100-192 2.79e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 39.16  E-value: 2.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 100 IAIAMKLGLVPFHFWFP----EVLQGSSMIIALLLSTTLKFPPITI---LFLTSHSL-NPTLLT--TMAILSAALggwMG 169
Cdd:CHL00011 219 IAYAVKLPIIPLHTWLPdthgEAHYSTCMLLAGILLKMGAYGLIRInmeLLPHAHSIfSPWLVIvgAIQIIYAAS---TS 295

                         90       100
                 ....*....|....*....|...
gi 537421488 170 LNQTQIRKILAFSSISHMGWMAI 192
Cdd:CHL00011 296 LGQRNLKKRIAYSSVSHMGFIII 318
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 33-267 5.94e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 38.03  E-value: 5.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488  33 LEINTLAIIPLISKSHHPRAIEATIKYFLVQATAS------ALLLFSSMSNAWSTGQWDITQLTHPTSCLLLTIAIAMKL 106
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKS 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 107 GLVPFHFWFPEVLQGSSMIIALLLSTTLKFPPITILFLTSHSLNP------TLLTTMAILSAALGGWMGLNQTQIRKILA 180
Cdd:PRK06525 222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 537421488 181 FSSISHMGWMAIITTY-----NPNLTLLTFYLYT---------LMTTTVFLTLNTTKVLKLVTMMtswTKTPMLNATLML 246
Cdd:PRK06525 302 YSTITQLGYMFFGLSLailgsRLALEGSIAYIFNhafakslffLVAGALSYSCGTRLLPRLRGVL---KKLPLVGVGFCV 378

                        250       260
                 ....*....|....*....|.
gi 537421488 247 VLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK06525 379 AALAITGVPPFNGFFSKFPIF 399
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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