![](files/infoQ.gif)
VP1, partial [enterovirus D120]
List of domain hits
![](files/help.png)
Name | Accession | Description | Interval | E-value | |||
Rhv | pfam00073 | picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by ... |
92-240 | 1.62e-31 | |||
picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognized. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. : Pssm-ID: 395026 Cd Length: 170 Bit Score: 118.18 E-value: 1.62e-31
|
|||||||
Pico_P2A super family | cl03031 | Picornavirus core protein 2A; This protein is a protease, involved in cleavage of the ... |
370-431 | 4.45e-30 | |||
Picornavirus core protein 2A; This protein is a protease, involved in cleavage of the polyprotein. The actual alignment was detected with superfamily member pfam00947: Pssm-ID: 395757 Cd Length: 127 Bit Score: 112.86 E-value: 4.45e-30
|
|||||||
Name | Accession | Description | Interval | E-value | ||||
Rhv | pfam00073 | picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by ... |
92-240 | 1.62e-31 | ||||
picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognized. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. Pssm-ID: 395026 Cd Length: 170 Bit Score: 118.18 E-value: 1.62e-31
|
||||||||
rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
112-310 | 1.13e-30 | ||||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich Pssm-ID: 119412 Cd Length: 178 Bit Score: 116.34 E-value: 1.13e-30
|
||||||||
Pico_P2A | pfam00947 | Picornavirus core protein 2A; This protein is a protease, involved in cleavage of the ... |
370-431 | 4.45e-30 | ||||
Picornavirus core protein 2A; This protein is a protease, involved in cleavage of the polyprotein. Pssm-ID: 395757 Cd Length: 127 Bit Score: 112.86 E-value: 4.45e-30
|
||||||||
Name | Accession | Description | Interval | E-value | ||||
Rhv | pfam00073 | picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by ... |
92-240 | 1.62e-31 | ||||
picornavirus capsid protein; CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognized. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. Pssm-ID: 395026 Cd Length: 170 Bit Score: 118.18 E-value: 1.62e-31
|
||||||||
rhv_like | cd00205 | Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA ... |
112-310 | 1.13e-30 | ||||
Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich Pssm-ID: 119412 Cd Length: 178 Bit Score: 116.34 E-value: 1.13e-30
|
||||||||
Pico_P2A | pfam00947 | Picornavirus core protein 2A; This protein is a protease, involved in cleavage of the ... |
370-431 | 4.45e-30 | ||||
Picornavirus core protein 2A; This protein is a protease, involved in cleavage of the polyprotein. Pssm-ID: 395757 Cd Length: 127 Bit Score: 112.86 E-value: 4.45e-30
|
||||||||
Blast search parameters | ||||
|