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Conserved domains on  [gi|534534295|gb|EFE45471|]
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hypothetical protein HMPREF0863_02650 [Erysipelotrichaceae bacterium 5_2_54FAA]

Protein Classification

SRPBCC family protein( domain architecture ID 51693)

SRPBCC (START/RHOalphaC/PITP/Bet v1/CoxG/CalC) family protein may have a deep hydrophobic ligand-binding pocket

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3284 super family cl48118
Domain of unknown function (DUF3284); This family of proteins with unknown function appears to ...
 2-112 3.24e-18

Domain of unknown function (DUF3284); This family of proteins with unknown function appears to be restricted to Firmicutes.


The actual alignment was detected with superfamily member pfam11687:

Pssm-ID: 463322  Cd Length: 115  Bit Score: 74.99  E-value: 3.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 534534295    2 KVRQHLQVSAEAFFAEIMTSICADIQKETKKKVRMAILeKGYSYTKRLpkrsTKNAEVIVKVLDCIPNRRYCASFTSQMD 81
Cdd:pfam11687   1 KISKTLNVSAEDFFDKLIDSVLYDIKQATGKTLSRDQL-KGYEYSKTF----KNKSRAKVEITEFVENSKYQFKTSSNRG 75

                          90       100       110
                  ....*....|....*....|....*....|.
gi 534534295   82 ITIVSYDIEVMDAGTIAVTYEENYQLKDAYQ 112
Cdd:pfam11687  76 TFIVRYEIEPLDDGKTEVTYEEKMESKGFFQ 106
 
Name Accession Description Interval E-value
DUF3284 pfam11687
Domain of unknown function (DUF3284); This family of proteins with unknown function appears to ...
 2-112 3.24e-18

Domain of unknown function (DUF3284); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 463322  Cd Length: 115  Bit Score: 74.99  E-value: 3.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 534534295    2 KVRQHLQVSAEAFFAEIMTSICADIQKETKKKVRMAILeKGYSYTKRLpkrsTKNAEVIVKVLDCIPNRRYCASFTSQMD 81
Cdd:pfam11687   1 KISKTLNVSAEDFFDKLIDSVLYDIKQATGKTLSRDQL-KGYEYSKTF----KNKSRAKVEITEFVENSKYQFKTSSNRG 75

                          90       100       110
                  ....*....|....*....|....*....|.
gi 534534295   82 ITIVSYDIEVMDAGTIAVTYEENYQLKDAYQ 112
Cdd:pfam11687  76 TFIVRYEIEPLDDGKTEVTYEEKMESKGFFQ 106
 
Name Accession Description Interval E-value
DUF3284 pfam11687
Domain of unknown function (DUF3284); This family of proteins with unknown function appears to ...
 2-112 3.24e-18

Domain of unknown function (DUF3284); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 463322  Cd Length: 115  Bit Score: 74.99  E-value: 3.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 534534295    2 KVRQHLQVSAEAFFAEIMTSICADIQKETKKKVRMAILeKGYSYTKRLpkrsTKNAEVIVKVLDCIPNRRYCASFTSQMD 81
Cdd:pfam11687   1 KISKTLNVSAEDFFDKLIDSVLYDIKQATGKTLSRDQL-KGYEYSKTF----KNKSRAKVEITEFVENSKYQFKTSSNRG 75

                          90       100       110
                  ....*....|....*....|....*....|.
gi 534534295   82 ITIVSYDIEVMDAGTIAVTYEENYQLKDAYQ 112
Cdd:pfam11687  76 TFIVRYEIEPLDDGKTEVTYEEKMESKGFFQ 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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