NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|532022454|ref|XP_005354591|]
View 

protein NDRG1 [Microtus ochrogaster]

Protein Classification

NDRG family protein( domain architecture ID 11140417)

N-myc downstream-regulated gene (NDRG) family protein may be involved in cellular differentiation events; similar to Homo sapiens protein NDRG1, which is a stress-responsive protein involved in hormone responses, cell growth, and differentiation; belongs to the alpha/beta hydrolase superfamily

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Ndr pfam03096
Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, ...
34-316 1.24e-172

Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.).


:

Pssm-ID: 397285 [Multi-domain]  Cd Length: 285  Bit Score: 483.01  E-value: 1.24e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454   34 EQDIETLHGSLHVTLCGTPKGNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAPSFPVGYMYP 113
Cdd:pfam03096   1 EHIIETPCGSVHVTVYGDPEGKKPPILTYHDLGLNHKSCFQGLFNSESMQEILENFCIYHVDAPGQEDGAASFPGGYPYP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  114 SMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNVNPCAEGWMDWAASKIS-------GWTQA 186
Cdd:pfam03096  81 SMDDLADMLPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSskllyyyGMTDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  187 LPDMVMSHLFGKEEMHNNVEVVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPMPGThtvtlQCPALLVVGDNSPAV 266
Cdd:pfam03096 161 AKDYLLAHYFGKEELSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLET-----KCPVLLVVGDNSPHV 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 532022454  267 DAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMP 316
Cdd:pfam03096 236 DAVVECNTKLDPTKTTLLKVADCGGLVQQEQPGKLTESFKLFLQGMGYYP 285
 
Name Accession Description Interval E-value
Ndr pfam03096
Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, ...
34-316 1.24e-172

Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.).


Pssm-ID: 397285 [Multi-domain]  Cd Length: 285  Bit Score: 483.01  E-value: 1.24e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454   34 EQDIETLHGSLHVTLCGTPKGNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAPSFPVGYMYP 113
Cdd:pfam03096   1 EHIIETPCGSVHVTVYGDPEGKKPPILTYHDLGLNHKSCFQGLFNSESMQEILENFCIYHVDAPGQEDGAASFPGGYPYP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  114 SMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNVNPCAEGWMDWAASKIS-------GWTQA 186
Cdd:pfam03096  81 SMDDLADMLPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSskllyyyGMTDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  187 LPDMVMSHLFGKEEMHNNVEVVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPMPGThtvtlQCPALLVVGDNSPAV 266
Cdd:pfam03096 161 AKDYLLAHYFGKEELSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLET-----KCPVLLVVGDNSPHV 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 532022454  267 DAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMP 316
Cdd:pfam03096 236 DAVVECNTKLDPTKTTLLKVADCGGLVQQEQPGKLTESFKLFLQGMGYYP 285
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
34-311 3.07e-12

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 65.41  E-value: 3.07e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  34 EQDIETLHGSLHVTLCGTpkGNRPVILTyHDIGMNHkTCYNPLfnsedMQEITQHFAVCHVDAPGQqdGAPSFPVGYMyp 113
Cdd:COG0596    4 PRFVTVDGVRLHYREAGP--DGPPVVLL-HGLPGSS-YEWRPL-----IPALAAGYRVIAPDLRGH--GRSDKPAGGY-- 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454 114 SMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNvnpcaegwmdwaaskisgwtqalpdmvms 193
Cdd:COG0596   71 TLDDLADDLAALLDALGLERVVLVGHSMGGMVALELAARHPERVAGLVLVD----------------------------- 121
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454 194 hlfgkeemhnnvEVVHTYRQHIlnDMNPSNLHLFISAYNSRRDLEIERPMPgthtvTLQCPALLVVGDNSPAV-----DA 268
Cdd:COG0596  122 ------------EVLAALAEPL--RRPGLAPEALAALLRALARTDLRERLA-----RITVPTLVIWGEKDPIVppalaRR 182
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 532022454 269 VVECNSkldptKTTLLKMADCGGLPQISQPAKLAEAFKYFVQG 311
Cdd:COG0596  183 LAELLP-----NAELVVLPGAGHFPPLEQPEAFAAALRDFLAR 220
PRK10349 PRK10349
pimeloyl-ACP methyl ester esterase BioH;
83-189 2.95e-05

pimeloyl-ACP methyl ester esterase BioH;


Pssm-ID: 137836 [Multi-domain]  Cd Length: 256  Bit Score: 45.01  E-value: 2.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  83 QEITQHFAVCHVDAPGQqdgAPSFPVGYMypsmdQLAEMLPGVLHQFGLKSvIGMGTGAGAYILTRFALNNPEMVEGLVL 162
Cdd:PRK10349  34 EELSSHFTLHLVDLPGF---GRSRGFGAL-----SLADMAEAVLQQAPDKA-IWLGWSLGGLVASQIALTHPERVQALVT 104
                         90       100       110
                 ....*....|....*....|....*....|
gi 532022454 163 MNVNPC---AEGWMDWAASKISGWTQALPD 189
Cdd:PRK10349 105 VASSPCfsaRDEWPGIKPDVLAGFQQQLSD 134
 
Name Accession Description Interval E-value
Ndr pfam03096
Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, ...
34-316 1.24e-172

Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.).


Pssm-ID: 397285 [Multi-domain]  Cd Length: 285  Bit Score: 483.01  E-value: 1.24e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454   34 EQDIETLHGSLHVTLCGTPKGNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAPSFPVGYMYP 113
Cdd:pfam03096   1 EHIIETPCGSVHVTVYGDPEGKKPPILTYHDLGLNHKSCFQGLFNSESMQEILENFCIYHVDAPGQEDGAASFPGGYPYP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  114 SMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNVNPCAEGWMDWAASKIS-------GWTQA 186
Cdd:pfam03096  81 SMDDLADMLPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSskllyyyGMTDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  187 LPDMVMSHLFGKEEMHNNVEVVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPMPGThtvtlQCPALLVVGDNSPAV 266
Cdd:pfam03096 161 AKDYLLAHYFGKEELSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLET-----KCPVLLVVGDNSPHV 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 532022454  267 DAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMP 316
Cdd:pfam03096 236 DAVVECNTKLDPTKTTLLKVADCGGLVQQEQPGKLTESFKLFLQGMGYYP 285
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
34-311 3.07e-12

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 65.41  E-value: 3.07e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  34 EQDIETLHGSLHVTLCGTpkGNRPVILTyHDIGMNHkTCYNPLfnsedMQEITQHFAVCHVDAPGQqdGAPSFPVGYMyp 113
Cdd:COG0596    4 PRFVTVDGVRLHYREAGP--DGPPVVLL-HGLPGSS-YEWRPL-----IPALAAGYRVIAPDLRGH--GRSDKPAGGY-- 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454 114 SMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNvnpcaegwmdwaaskisgwtqalpdmvms 193
Cdd:COG0596   71 TLDDLADDLAALLDALGLERVVLVGHSMGGMVALELAARHPERVAGLVLVD----------------------------- 121
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454 194 hlfgkeemhnnvEVVHTYRQHIlnDMNPSNLHLFISAYNSRRDLEIERPMPgthtvTLQCPALLVVGDNSPAV-----DA 268
Cdd:COG0596  122 ------------EVLAALAEPL--RRPGLAPEALAALLRALARTDLRERLA-----RITVPTLVIWGEKDPIVppalaRR 182
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 532022454 269 VVECNSkldptKTTLLKMADCGGLPQISQPAKLAEAFKYFVQG 311
Cdd:COG0596  183 LAELLP-----NAELVVLPGAGHFPPLEQPEAFAAALRDFLAR 220
PRK10349 PRK10349
pimeloyl-ACP methyl ester esterase BioH;
83-189 2.95e-05

pimeloyl-ACP methyl ester esterase BioH;


Pssm-ID: 137836 [Multi-domain]  Cd Length: 256  Bit Score: 45.01  E-value: 2.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 532022454  83 QEITQHFAVCHVDAPGQqdgAPSFPVGYMypsmdQLAEMLPGVLHQFGLKSvIGMGTGAGAYILTRFALNNPEMVEGLVL 162
Cdd:PRK10349  34 EELSSHFTLHLVDLPGF---GRSRGFGAL-----SLADMAEAVLQQAPDKA-IWLGWSLGGLVASQIALTHPERVQALVT 104
                         90       100       110
                 ....*....|....*....|....*....|
gi 532022454 163 MNVNPC---AEGWMDWAASKISGWTQALPD 189
Cdd:PRK10349 105 VASSPCfsaRDEWPGIKPDVLAGFQQQLSD 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH