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Conserved domains on  [gi|530801702|gb|AGT51283|]
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E4 15.9 kDa protein [Human adenovirus E4]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Adeno_E4_34 super family cl04566
Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus ...
 2-62 3.10e-04

Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus E4 34 kDa protein.


The actual alignment was detected with superfamily member pfam04528:

Pssm-ID: 461344  Cd Length: 145  Bit Score: 38.52  E-value: 3.10e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530801702    2 SGNSSIMTRSRTRLALSCHHPYQppATLPRCEETESRASLVEDHPVLPDCDTLSMHNITVI 62
Cdd:pfam04528   4 SFRMFGDGAMFNQRFISRREPVN--RDMLKEFEFESRAFILEDHLILLECNTDGHHGSSVP 62
 
Name Accession Description Interval E-value
Adeno_E4_34 pfam04528
Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus ...
 2-62 3.10e-04

Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus E4 34 kDa protein.


Pssm-ID: 461344  Cd Length: 145  Bit Score: 38.52  E-value: 3.10e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530801702    2 SGNSSIMTRSRTRLALSCHHPYQppATLPRCEETESRASLVEDHPVLPDCDTLSMHNITVI 62
Cdd:pfam04528   4 SFRMFGDGAMFNQRFISRREPVN--RDMLKEFEFESRAFILEDHLILLECNTDGHHGSSVP 62
 
Name Accession Description Interval E-value
Adeno_E4_34 pfam04528
Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus ...
 2-62 3.10e-04

Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus E4 34 kDa protein.


Pssm-ID: 461344  Cd Length: 145  Bit Score: 38.52  E-value: 3.10e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530801702    2 SGNSSIMTRSRTRLALSCHHPYQppATLPRCEETESRASLVEDHPVLPDCDTLSMHNITVI 62
Cdd:pfam04528   4 SFRMFGDGAMFNQRFISRREPVN--RDMLKEFEFESRAFILEDHLILLECNTDGHHGSSVP 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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