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Conserved domains on  [gi|530786828|ref|YP_008430518|]
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hypothetical protein GOKU_2 [Mycobacterium phage Goku]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DAO super family cl40741
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 7-49 3.78e-03

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


The actual alignment was detected with superfamily member PRK11728:

Pssm-ID: 477422 [Multi-domain]  Cd Length: 393  Bit Score: 33.26  E-value: 3.78e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530786828   7 GTVITGWPV-----DDEELRVASSLGEFVAK-----------RLAEMLGVKLDPAI--FRG 49
Cdd:PRK11728 164 GEIRLGAEVtaldeHANGVVVRTTQGEYEARtlincaglmsdRLAKMAGLEPDFRIvpFRG 224
 
Name Accession Description Interval E-value
PRK11728 PRK11728
L-2-hydroxyglutarate oxidase;
7-49 3.78e-03

L-2-hydroxyglutarate oxidase;


Pssm-ID: 183292 [Multi-domain]  Cd Length: 393  Bit Score: 33.26  E-value: 3.78e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530786828   7 GTVITGWPV-----DDEELRVASSLGEFVAK-----------RLAEMLGVKLDPAI--FRG 49
Cdd:PRK11728 164 GEIRLGAEVtaldeHANGVVVRTTQGEYEARtlincaglmsdRLAKMAGLEPDFRIvpFRG 224
 
Name Accession Description Interval E-value
PRK11728 PRK11728
L-2-hydroxyglutarate oxidase;
7-49 3.78e-03

L-2-hydroxyglutarate oxidase;


Pssm-ID: 183292 [Multi-domain]  Cd Length: 393  Bit Score: 33.26  E-value: 3.78e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530786828   7 GTVITGWPV-----DDEELRVASSLGEFVAK-----------RLAEMLGVKLDPAI--FRG 49
Cdd:PRK11728 164 GEIRLGAEVtaldeHANGVVVRTTQGEYEARtlincaglmsdRLAKMAGLEPDFRIvpFRG 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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