|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-210 |
8.43e-138 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 389.53 E-value: 8.43e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00156 146 LGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIM 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00156 226 LMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGN 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00156 306 QFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-209 |
2.82e-54 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 178.06 E-value: 2.82e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFH-FVLPFMITAMAAIHLFFLHQTGSNNPIG----LNSNIDKIPFHPYFTFKDsi 75
Cdd:COG1290 167 IGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD-- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 76 TFVIMMSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSISILMILPFYN 153
Cdd:COG1290 245 GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLD 324
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 52788489 154 KTQFRGIQFYPINQILFWMMVIVVFLLTWIGKRPveEPYIMTGQILTIIYFSYFLI 209
Cdd:COG1290 325 RSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
52-198 |
2.86e-48 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 155.11 E-value: 2.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 52 NPIGLNSNIDKIPFHPYFTFKDSITFVIMMSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 131
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52788489 132 KLGGVIALFLSISILMILPFYNKTQFRGiQFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQI 198
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
103-203 |
3.18e-43 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 140.31 E-value: 3.18e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 103 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGIQFYPINQILFWMMVIVVFLLTW 182
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 52788489 183 IGKRPVEEPYIMTGQILTIIY 203
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
81-184 |
6.13e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 52.88 E-value: 6.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTQFRG 159
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122
|
90 100
....*....|....*....|....*
gi 52788489 160 IQFYPINQILFWMMVIVVFlltWIG 184
Cdd:TIGR01156 123 PFRRPVATTVFLFGTVVAL---WLG 144
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-210 |
8.43e-138 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 389.53 E-value: 8.43e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00156 146 LGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIM 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00156 226 LMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGN 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00156 306 QFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-211 |
5.64e-113 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 327.63 E-value: 5.64e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00145 157 VGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00145 237 LFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSL 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINI 211
Cdd:MTH00145 317 SFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILP 367
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-209 |
1.02e-109 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 318.78 E-value: 1.02e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00191 153 IGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFIL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00191 233 LFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSN 312
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00191 313 TFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-209 |
2.15e-109 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 318.52 E-value: 2.15e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00131 156 VGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAIL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00131 236 LLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00131 316 TFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-209 |
1.43e-108 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 316.46 E-value: 1.43e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00119 157 IGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLM 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00119 237 LTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSM 316
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00119 317 TFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-211 |
4.76e-108 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 315.08 E-value: 4.76e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00074 157 MGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIM 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00074 237 LTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSL 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINI 211
Cdd:MTH00074 317 MFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIII 367
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-210 |
9.49e-107 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 311.61 E-value: 9.49e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00016 157 IGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVM 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00016 237 LFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGL 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00016 317 SFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-209 |
3.44e-105 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 307.72 E-value: 3.44e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00100 156 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00100 236 ILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSM 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00100 316 MFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-209 |
2.23e-97 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 287.76 E-value: 2.23e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00034 156 IGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLIL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00034 236 FAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSS 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00034 316 TFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-210 |
2.82e-89 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 267.17 E-value: 2.82e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00224 157 IGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00224 237 ILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSL 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00224 317 PFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIIS 366
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-211 |
4.75e-89 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 266.57 E-value: 4.75e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00022 155 VGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00022 235 FFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGL 314
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINI 211
Cdd:MTH00022 315 TFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-209 |
6.52e-89 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 266.57 E-value: 6.52e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00053 157 VGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVIL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00053 237 LIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGL 316
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00053 317 SFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-209 |
3.41e-64 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 203.25 E-value: 3.41e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00033 153 VGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLIL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLClINPYI---LGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQF 157
Cdd:MTH00033 233 FGVFVIIG-IEPRIetlLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKI 311
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 52788489 158 RGIQFYPINQILFWMMVIVVFLLTWIGKRPV-EEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00033 312 RSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-209 |
1.37e-61 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 195.54 E-value: 1.37e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00086 145 WGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFW 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MsLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNktqFRGI 160
Cdd:MTH00086 225 L-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTS 300
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 52788489 161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00086 301 CLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-209 |
2.82e-54 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 178.06 E-value: 2.82e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFH-FVLPFMITAMAAIHLFFLHQTGSNNPIG----LNSNIDKIPFHPYFTFKDsi 75
Cdd:COG1290 167 IGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD-- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 76 TFVIMMSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSISILMILPFYN 153
Cdd:COG1290 245 GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLD 324
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 52788489 154 KTQFRGIQFYPINQILFWMMVIVVFLLTWIGKRPveEPYIMTGQILTIIYFSYFLI 209
Cdd:COG1290 325 RSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
52-198 |
2.86e-48 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 155.11 E-value: 2.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 52 NPIGLNSNIDKIPFHPYFTFKDSITFVIMMSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 131
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52788489 132 KLGGVIALFLSISILMILPFYNKTQFRGiQFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQI 198
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
103-203 |
3.18e-43 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 140.31 E-value: 3.18e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 103 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGIQFYPINQILFWMMVIVVFLLTW 182
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 52788489 183 IGKRPVEEPYIMTGQILTIIY 203
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-202 |
2.64e-40 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 140.50 E-value: 2.64e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 2 GTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNI-DKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00046 148 GSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVV 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00046 228 CSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV 306
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 52788489 161 qfypINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTII 202
Cdd:MTH00046 307 ----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-98 |
8.30e-22 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 87.68 E-value: 8.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHF-VLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVI 79
Cdd:pfam13631 71 VGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLI 150
|
90
....*....|....*....
gi 52788489 80 MMSLLILLCLINPYILGDP 98
Cdd:pfam13631 151 TVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-51 |
4.34e-13 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 65.08 E-value: 4.34e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSN 51
Cdd:cd00284 150 IGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-49 |
9.71e-12 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 61.24 E-value: 9.71e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 52788489 1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTG 49
Cdd:pfam00033 141 IGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
78-151 |
1.16e-10 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 57.88 E-value: 1.16e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 52788489 78 VIM--MSLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPF 151
Cdd:COG5679 44 VILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
82-184 |
3.16e-10 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 56.55 E-value: 3.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 82 SLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTQFRGI 160
Cdd:CHL00058 49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNP 123
|
90 100
....*....|....*....|....
gi 52788489 161 QFYPINQILFwmmVIVVFLLTWIG 184
Cdd:CHL00058 124 FRRPVATTVF---LIGTAVALWLG 144
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
81-184 |
6.13e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 52.88 E-value: 6.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489 81 MSLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTQFRG 159
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122
|
90 100
....*....|....*....|....*
gi 52788489 160 IQFYPINQILFWMMVIVVFlltWIG 184
Cdd:TIGR01156 123 PFRRPVATTVFLFGTVVAL---WLG 144
|
|
|