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Conserved domains on  [gi|52788489|gb|AAU87332|]
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cytochrome b, partial (mitochondrion) [Chorthippus hammarstroemi]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
1-210 8.43e-138

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 389.53  E-value: 8.43e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00156 146 LGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIM 225
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00156 226 LMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGN 305
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00156 306 QFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
1-210 8.43e-138

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 389.53  E-value: 8.43e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00156 146 LGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIM 225
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00156 226 LMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGN 305
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00156 306 QFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-209 2.82e-54

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 178.06  E-value: 2.82e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   1 LGTDLVQWVWGGFAVDNATLYRFFTFH-FVLPFMITAMAAIHLFFLHQTGSNNPIG----LNSNIDKIPFHPYFTFKDsi 75
Cdd:COG1290 167 IGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD-- 244
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489  76 TFVIMMSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSISILMILPFYN 153
Cdd:COG1290 245 GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLD 324
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 52788489 154 KTQFRGIQFYPINQILFWMMVIVVFLLTWIGKRPveEPYIMTGQILTIIYFSYFLI 209
Cdd:COG1290 325 RSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
52-198 2.86e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 155.11  E-value: 2.86e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489  52 NPIGLNSNIDKIPFHPYFTFKDSITFVIMMSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 131
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52788489 132 KLGGVIALFLSISILMILPFYNKTQFRGiQFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQI 198
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
103-203 3.18e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 140.31  E-value: 3.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   103 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGIQFYPINQILFWMMVIVVFLLTW 182
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
                          90       100
                  ....*....|....*....|.
gi 52788489   183 IGKRPVEEPYIMTGQILTIIY 203
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
81-184 6.13e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.88  E-value: 6.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    81 MSLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTQFRG 159
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122
                          90       100
                  ....*....|....*....|....*
gi 52788489   160 IQFYPINQILFWMMVIVVFlltWIG 184
Cdd:TIGR01156 123 PFRRPVATTVFLFGTVVAL---WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
1-210 8.43e-138

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 389.53  E-value: 8.43e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00156 146 LGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIM 225
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00156 226 LMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGN 305
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00156 306 QFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
1-211 5.64e-113

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 327.63  E-value: 5.64e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00145 157 VGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVL 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00145 237 LFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSL 316
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINI 211
Cdd:MTH00145 317 SFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILP 367
CYTB MTH00191
cytochrome b; Provisional
1-209 1.02e-109

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 318.78  E-value: 1.02e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00191 153 IGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFIL 232
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00191 233 LFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSN 312
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00191 313 TFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
1-209 2.15e-109

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 318.52  E-value: 2.15e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00131 156 VGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAIL 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00131 236 LLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGL 315
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00131 316 TFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00119
cytochrome b; Provisional
1-209 1.43e-108

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 316.46  E-value: 1.43e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00119 157 IGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLM 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00119 237 LTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSM 316
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00119 317 TFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00074
cytochrome b; Provisional
1-211 4.76e-108

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 315.08  E-value: 4.76e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00074 157 MGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIM 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00074 237 LTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSL 316
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINI 211
Cdd:MTH00074 317 MFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIII 367
CYTB MTH00016
cytochrome b; Validated
1-210 9.49e-107

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 311.61  E-value: 9.49e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00016 157 IGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVM 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00016 237 LFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGL 316
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00016 317 SFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00100
cytochrome b; Provisional
1-209 3.44e-105

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 307.72  E-value: 3.44e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00100 156 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLL 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00100 236 ILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSM 315
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00100 316 MFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00034
cytochrome b; Validated
1-209 2.23e-97

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 287.76  E-value: 2.23e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00034 156 IGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLIL 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00034 236 FAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSS 315
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00034 316 TFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
1-210 2.82e-89

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 267.17  E-value: 2.82e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00224 157 IGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIA 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00224 237 ILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSL 316
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 210
Cdd:MTH00224 317 PFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIIS 366
CYTB MTH00022
cytochrome b; Validated
1-211 4.75e-89

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 266.57  E-value: 4.75e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00022 155 VGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVL 234
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00022 235 FFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGL 314
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINI 211
Cdd:MTH00022 315 TFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00053
cytochrome b; Provisional
1-209 6.52e-89

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 266.57  E-value: 6.52e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00053 157 VGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVIL 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00053 237 LIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGL 316
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00053 317 SFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
1-209 3.41e-64

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 203.25  E-value: 3.41e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00033 153 VGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLIL 232
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLClINPYI---LGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQF 157
Cdd:MTH00033 233 FGVFVIIG-IEPRIetlLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKI 311
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 52788489  158 RGIQFYPINQILFWMMVIVVFLLTWIGKRPV-EEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00033 312 RSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
1-209 1.37e-61

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 195.54  E-value: 1.37e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00086 145 WGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFW 224
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MsLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNktqFRGI 160
Cdd:MTH00086 225 L-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTS 300
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 52788489  161 QFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 209
Cdd:MTH00086 301 CLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-209 2.82e-54

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 178.06  E-value: 2.82e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   1 LGTDLVQWVWGGFAVDNATLYRFFTFH-FVLPFMITAMAAIHLFFLHQTGSNNPIG----LNSNIDKIPFHPYFTFKDsi 75
Cdd:COG1290 167 IGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD-- 244
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489  76 TFVIMMSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSISILMILPFYN 153
Cdd:COG1290 245 GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLD 324
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 52788489 154 KTQFRGIQFYPINQILFWMMVIVVFLLTWIGKRPveEPYIMTGQILTIIYFSYFLI 209
Cdd:COG1290 325 RSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
52-198 2.86e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 155.11  E-value: 2.86e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489  52 NPIGLNSNIDKIPFHPYFTFKDSITFVIMMSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPN 131
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52788489 132 KLGGVIALFLSISILMILPFYNKTQFRGiQFYPINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQI 198
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
103-203 3.18e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 140.31  E-value: 3.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   103 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFYNKTQFRGIQFYPINQILFWMMVIVVFLLTW 182
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
                          90       100
                  ....*....|....*....|.
gi 52788489   183 IGKRPVEEPYIMTGQILTIIY 203
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
CYTB MTH00046
cytochrome b; Validated
2-202 2.64e-40

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 140.50  E-value: 2.64e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    2 GTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSNNPIGLNSNI-DKIPFHPYFTFKDSITFVIM 80
Cdd:MTH00046 148 GSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVV 227
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   81 MSLLILLCLINPYILGDPDNFVPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLFLSISILMILPFYNKTQFRGI 160
Cdd:MTH00046 228 CSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV 306
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 52788489  161 qfypINQILFWMMVIVVFLLTWIGKRPVEEPYIMTGQILTII 202
Cdd:MTH00046 307 ----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-98 8.30e-22

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 87.68  E-value: 8.30e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489     1 LGTDLVQWVWGGFAVDNATLYRFFTFHF-VLPFMITAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDSITFVI 79
Cdd:pfam13631  71 VGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLI 150
                          90
                  ....*....|....*....
gi 52788489    80 MMSLLILLCLINPYILGDP 98
Cdd:pfam13631 151 TVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
1-51 4.34e-13

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 65.08  E-value: 4.34e-13
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 52788489   1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTGSN 51
Cdd:cd00284 150 IGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-49 9.71e-12

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 61.24  E-value: 9.71e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 52788489     1 LGTDLVQWVWGGFAVDNATLYRFFTFHFVLPFMITAMAAIHLFFLHQTG 49
Cdd:pfam00033 141 IGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
78-151 1.16e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 57.88  E-value: 1.16e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 52788489  78 VIM--MSLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPF 151
Cdd:COG5679  44 VILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114
petD CHL00058
cytochrome b6/f complex subunit IV
82-184 3.16e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.55  E-value: 3.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489   82 SLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTQFRGI 160
Cdd:CHL00058  49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNP 123
                         90       100
                 ....*....|....*....|....
gi 52788489  161 QFYPINQILFwmmVIVVFLLTWIG 184
Cdd:CHL00058 124 FRRPVATTVF---LIGTAVALWLG 144
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
81-184 6.13e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.88  E-value: 6.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52788489    81 MSLLILLCLINPYILGDPdnfvpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMILPFY-NKTQFRG 159
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122
                          90       100
                  ....*....|....*....|....*
gi 52788489   160 IQFYPINQILFWMMVIVVFlltWIG 184
Cdd:TIGR01156 123 PFRRPVATTVFLFGTVVAL---WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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