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Conserved domains on  [gi|52550775|gb|AAU84433|]
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MYB transcription factor [Oryza sativa Japonica Group]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1000535)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may be involved in the regulation of gene expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 56-157 7.72e-41

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 141.37  E-value: 7.72e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550775   56 MRKGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSR 135
Cdd:PLN03212  23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSL 102

                         90       100
                 ....*....|....*....|..
gi 52550775  136 IAKSIPGRTDNEIKNYWRTHLR 157
Cdd:PLN03212 103 IAGRIPGRTDNEIKNYWNTHLR 124
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 56-157 7.72e-41

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 141.37  E-value: 7.72e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550775   56 MRKGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSR 135
Cdd:PLN03212  23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSL 102

                         90       100
                 ....*....|....*....|..
gi 52550775  136 IAKSIPGRTDNEIKNYWRTHLR 157
Cdd:PLN03212 103 IAGRIPGRTDNEIKNYWNTHLR 124
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 111-156 5.72e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.84  E-value: 5.72e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 52550775   111 RGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHL 156
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 58-152 4.62e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 71.74  E-value: 4.62e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550775  58 KGPWTEQEDVQLVWFVRLLGERRWDFLAkvSGLQRS-GKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRI 136
Cdd:COG5147  20 GGSWKRTEDEDLKALVKKLGPNNWSKVA--SLLISStGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTI 97

                        90
                ....*....|....*.
gi 52550775 137 AKSIPGRTDNEIKNYW 152
Cdd:COG5147  98 ADYKDRRTAQQCVERY 113
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
111-157 3.04e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 59.93  E-value: 3.04e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 52550775    111 RGRMSPEEERMVVQLHAKLG-NRWSRIAKSIPGRTDNEIKNYWRTHLR 157
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLK 48
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 113-156 5.74e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 59.13  E-value: 5.74e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 52550775 113 RMSPEEERMVVQLHAKLG-NRWSRIAKSIPGRTDNEIKNYWRTHL 156
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 56-157 7.72e-41

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 141.37  E-value: 7.72e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550775   56 MRKGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSR 135
Cdd:PLN03212  23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSL 102

                         90       100
                 ....*....|....*....|..
gi 52550775  136 IAKSIPGRTDNEIKNYWRTHLR 157
Cdd:PLN03212 103 IAGRIPGRTDNEIKNYWNTHLR 124
PLN03091 PLN03091
hypothetical protein; Provisional
 56-157 4.78e-38

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 138.96  E-value: 4.78e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550775   56 MRKGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSR 135
Cdd:PLN03091  12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ 91

                         90       100
                 ....*....|....*....|..
gi 52550775  136 IAKSIPGRTDNEIKNYWRTHLR 157
Cdd:PLN03091  92 IAAQLPGRTDNEIKNLWNSCLK 113
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 111-156 5.72e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.84  E-value: 5.72e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 52550775   111 RGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHL 156
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 58-152 4.62e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 71.74  E-value: 4.62e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550775  58 KGPWTEQEDVQLVWFVRLLGERRWDFLAkvSGLQRS-GKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRI 136
Cdd:COG5147  20 GGSWKRTEDEDLKALVKKLGPNNWSKVA--SLLISStGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTI 97

                        90
                ....*....|....*.
gi 52550775 137 AKSIPGRTDNEIKNYW 152
Cdd:COG5147  98 ADYKDRRTAQQCVERY 113
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
111-157 3.04e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 59.93  E-value: 3.04e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 52550775    111 RGRMSPEEERMVVQLHAKLG-NRWSRIAKSIPGRTDNEIKNYWRTHLR 157
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLK 48
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 113-156 5.74e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 59.13  E-value: 5.74e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 52550775 113 RMSPEEERMVVQLHAKLG-NRWSRIAKSIPGRTDNEIKNYWRTHL 156
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
58-107 7.18e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 50.69  E-value: 7.18e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 52550775     58 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLqRSGKSCRLRWVNYLHP 107
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 60-105 3.92e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 48.73  E-value: 3.92e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 52550775  60 PWTEQEDVQLVWFVRLLGERRWDFLAKVSGLqRSGKSCRLRWVNYL 105
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 61-122 5.55e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.07  E-value: 5.55e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52550775    61 WTEQEDVQLVWFVRLLGeRRWDFLAKVSGlQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMV 122
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 115-157 7.17e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 42.68  E-value: 7.17e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 52550775   115 SPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHLR 157
Cdd:pfam13921   2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLN 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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