|
Name |
Accession |
Description |
Interval |
E-value |
| DUF1411 |
pfam07199 |
Protein of unknown function (DUF1411); This family represents a conserved region approximately ... |
1-182 |
2.30e-96 |
|
Protein of unknown function (DUF1411); This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Pssm-ID: 369258 Cd Length: 188 Bit Score: 288.32 E-value: 2.30e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 1 LMLASVVLLSAFSGNVWANEAEVSQVVKPGSVNGWWFTKgeydvdpewneadIVYDDYKKYNGFSDVDKTKSTEKTSLGD 80
Cdd:pfam07199 19 LMLASVVVLSAFSGNVWADEAEVPQEPVEKKKEGGCFSW-------------SVKEDYQKLQNLPDITKTDNTEKTSLSD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 81 IFMKLGP-KKCMNLRVKDVDVDMQRANRRLATILQHITDHTPKSPMFAVSENIVKALNKQHTIELPKALAQQLCQFDAKA 159
Cdd:pfam07199 86 ISVKLGPaKKSMNLWVKKVDVDMSLLNKRISVLLQHVTNYGPDSPGFGISENIVKVLNKKGTIELPKDLAQDLCQLPSGK 165
|
170 180
....*....|....*....|...
gi 52550759 160 MKADESGQFKDAFSTFFADFIAD 182
Cdd:pfam07199 166 MKLYEWRCFTDEFATFIAEMLTD 188
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
321-401 |
8.82e-11 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 64.53 E-value: 8.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 321 KPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAE 400
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116
|
.
gi 52550759 401 T 401
Cdd:PRK12270 117 V 117
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
317-397 |
4.43e-10 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 62.22 E-value: 4.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116
|
.
gi 52550759 397 T 397
Cdd:PRK12270 117 V 117
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
318-414 |
1.78e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 60.00 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAE-TPAETPAEKPAETPAEKPAE 396
Cdd:PRK07764 403 AAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAApSAQPAPAPAAAPEPTAAPAP 482
|
90
....*....|....*...
gi 52550759 397 TPAETPAETPAEKPASRP 414
Cdd:PRK07764 483 APPAAPAPAAAPAAPAAP 500
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
330-408 |
1.87e-09 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 60.29 E-value: 1.87e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 330 PAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPAE 408
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
318-414 |
4.29e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 58.84 E-value: 4.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEK-PAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK07764 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAgGAPSPPPAAAPSAQPAPAPAAAPEPTA 478
|
90
....*....|....*...
gi 52550759 397 TPAETPAETPAEKPASRP 414
Cdd:PRK07764 479 APAPAPPAAPAPAAAPAA 496
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
334-411 |
6.55e-09 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 58.36 E-value: 6.55e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 52550759 334 PAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAetPAEKPAETPAETPAETPAEKPA 411
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA--AAAAPAAPPAAAAAAAPAAAAV 113
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
317-402 |
9.49e-09 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 57.72 E-value: 9.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPaetpaEKPAEKPaEKPAETPAetpAEKPAEKPAEKP-AEKPAETPAETPAEKPAETpaEKPA 395
Cdd:NF033838 411 KVKEKPAEQPQPAPAPQP-----EKPAPKP-EKPAEQPK---AEKPADQQAEEDyARRSEEEYNRLTQQQPPKT--EKPA 479
|
....*..
gi 52550759 396 EtpAETP 402
Cdd:NF033838 480 Q--PSTP 484
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
317-399 |
1.54e-08 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 55.01 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPaeKPAETPAEKPAE 396
Cdd:PRK11633 66 QPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAP--KPEPKPVVEEKA 143
|
...
gi 52550759 397 TPA 399
Cdd:PRK11633 144 APT 146
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
345-427 |
1.85e-08 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 57.21 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 345 KPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPAEKPAS-RPCYGGRKGEE 423
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAaAAPAAAAVEDE 116
|
....
gi 52550759 424 VVVL 427
Cdd:PRK12270 117 VTPL 120
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
320-403 |
1.96e-08 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 54.62 E-value: 1.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 320 EKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPaeKPAETPAETPAEKPAETPAEKPAETPA 399
Cdd:PRK11633 65 TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKP--KPKPKPQQKVEAPPAPKPEPKPVVEEK 142
|
....
gi 52550759 400 ETPA 403
Cdd:PRK11633 143 AAPT 146
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
318-456 |
2.94e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 56.26 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAEtPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAET 397
Cdd:PRK14951 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP-AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 398 PAETPAETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTPLKELPVvkgpstnrlWHENV 456
Cdd:PRK14951 452 PAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV---------WHATV 501
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
322-407 |
2.95e-08 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 54.24 E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 322 PAETPA--EAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPA 399
Cdd:PRK11633 57 PAATQAlpTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPK 136
|
....*...
gi 52550759 400 ETPAETPA 407
Cdd:PRK11633 137 PVVEEKAA 144
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
226-421 |
5.17e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 55.27 E-value: 5.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 226 VTQPAIPTIPEQPVAEEPSDVTVTAPEeceeeivinPEEENKPDSSSSSSSSSSSSSESDSDEEDREPVVEEPIVEEPVV 305
Cdd:PRK12323 382 VAQPAPAAAAPAAAAPAPAAPPAAPAA---------APAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 306 EEPVVEEPVVEKPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPA--ETPAETPAEKPAEKPAEKPAEKPAET--PAET 381
Cdd:PRK12323 453 APAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweELPPEFASPAPAQPDAAPAGWVAESIpdPATA 532
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 52550759 382 PAEKPAETPAEKPAETPAETPAETPAEKPASRPCYGGRKG 421
Cdd:PRK12323 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
323-437 |
9.33e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.61 E-value: 9.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 323 AETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE-TPAET 401
Cdd:PRK07764 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQpAPAPA 471
|
90 100 110
....*....|....*....|....*....|....*.
gi 52550759 402 PAETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTPL 437
Cdd:PRK07764 472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
322-414 |
1.71e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.84 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 322 PAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEK-PAETPAEKPAETPAE 400
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAgGAPSPPPAAAPSAQP 466
|
90
....*....|....
gi 52550759 401 TPAETPAEKPASRP 414
Cdd:PRK07764 467 APAPAAAPEPTAAP 480
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
339-411 |
2.53e-07 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 53.09 E-value: 2.53e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 52550759 339 AEKPAEKPAEKPAETPaETPAEKPaEKPAEKP-AEKPAETPAETPAEKPAEtpaEKPAETPAETPAETpaEKPA 411
Cdd:NF033838 413 KEKPAEQPQPAPAPQP-EKPAPKP-EKPAEQPkAEKPADQQAEEDYARRSE---EEYNRLTQQQPPKT--EKPA 479
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
318-429 |
5.24e-07 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 51.48 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAET 397
Cdd:PRK10905 132 PVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETAT 211
|
90 100 110
....*....|....*....|....*....|..
gi 52550759 398 PAETPAETPAEkPASRPCYGGRKGEEVVVLQT 429
Cdd:PRK10905 212 TAPVQTASPAQ-TTATPAAGGKTAGNVGSLKS 242
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
319-414 |
6.34e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 52.16 E-value: 6.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETP 398
Cdd:PRK07003 391 VGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQP 470
|
90
....*....|....*.
gi 52550759 399 AETPAETPAEKPASRP 414
Cdd:PRK07003 471 PADSGSASAPASDAPP 486
|
|
| DUF1411 |
pfam07199 |
Protein of unknown function (DUF1411); This family represents a conserved region approximately ... |
398-471 |
7.24e-07 |
|
Protein of unknown function (DUF1411); This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Pssm-ID: 369258 Cd Length: 188 Bit Score: 49.49 E-value: 7.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 398 PAETPAEtPAEKPASRPCYGGRKGEEVVVLQ-------TTSTKQTPLKELPVVKGPSTN--RLWHENVDIDMSVVQKRLS 468
Cdd:pfam07199 38 EAEVPQE-PVEKKKEGGCFSWSVKEDYQKLQnlpditkTDNTEKTSLSDISVKLGPAKKsmNLWVKKVDVDMSLLNKRIS 116
|
...
gi 52550759 469 TIL 471
Cdd:pfam07199 117 VLL 119
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
318-409 |
7.91e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 51.53 E-value: 7.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEK-PAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK07764 423 PAPAAAPQPAPAPAPAPAPPSPAGNAPAgGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502
|
90
....*....|...
gi 52550759 397 TPAETPAETPAEK 409
Cdd:PRK07764 503 PAGADDAATLRER 515
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
318-413 |
8.50e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 51.77 E-value: 8.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPA-----EKPAEKPAEK--PAETPAETPAEKPAETP 390
Cdd:PRK07003 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDaafepAPRAAAPSAAtpAAVPDARAPAAASREDA 521
|
90 100
....*....|....*....|....
gi 52550759 391 AEKPAETPAETPAETPAE-KPASR 413
Cdd:PRK07003 522 PAAAAPPAPEARPPTPAAaAPAAR 545
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
317-411 |
1.83e-06 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 49.80 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKpAETPAEKPAE 396
Cdd:PRK09510 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK-AAAEAKAAAE 239
|
90
....*....|....*
gi 52550759 397 TPAETPAETPAEKPA 411
Cdd:PRK09510 240 KAAAAKAAEKAAAAK 254
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
317-389 |
2.22e-06 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 49.68 E-value: 2.22e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEkPAEKPAETPAETPAEKPAET 389
Cdd:PTZ00144 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPE-PAPAAKPPPTPVARADPRET 190
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
326-390 |
2.22e-06 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 49.68 E-value: 2.22e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 326 PAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPaetPAEKPAETP 390
Cdd:PTZ00144 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPA---PAAKPPPTP 181
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
318-414 |
2.40e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.32 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAET 397
Cdd:PHA03247 2744 VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS 2823
|
90
....*....|....*..
gi 52550759 398 PAETPAETPAEKPASRP 414
Cdd:PHA03247 2824 PAGPLPPPTSAQPTAPP 2840
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
345-413 |
3.21e-06 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 49.30 E-value: 3.21e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 345 KPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPaetPAETPAEKPASR 413
Cdd:PTZ00144 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPA---PAAKPPPTPVAR 184
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
318-414 |
4.03e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.46 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAET 397
Cdd:PRK07003 398 AVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA 477
|
90
....*....|....*..
gi 52550759 398 PAETPAETPAEKPASRP 414
Cdd:PRK07003 478 SAPASDAPPDAAFEPAP 494
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
317-410 |
4.09e-06 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 49.34 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAET----PAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAE 392
Cdd:PHA03269 39 KPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASekfdPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTS 118
|
90 100
....*....|....*....|
gi 52550759 393 KPA--ETPAETPAETPAEKP 410
Cdd:PHA03269 119 AAQahEAPADAGTSAASKKP 138
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
338-413 |
4.73e-06 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 48.91 E-value: 4.73e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52550759 338 PAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAET-PAEKPAETPAETPAETPAEKPASR 413
Cdd:PTZ00144 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPaPAAKPPPTPVARADPRETRVPMSR 196
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
326-412 |
6.54e-06 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 48.57 E-value: 6.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 326 PAEAPAETPAETPAEKPAEKPAEKPAETPaeTPAEKPAEKPAEKPAEKPAETPAETPAEKPAETP--AEKPAETPAETPA 403
Cdd:PHA03269 40 PDPAPAPHQAASRAPDPAVAPTSAASRKP--DLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPqlAAAPKPDAAEAFT 117
|
....*....
gi 52550759 404 ETPAEKPAS 412
Cdd:PHA03269 118 SAAQAHEAP 126
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
319-452 |
8.21e-06 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 48.05 E-value: 8.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPA-ETPAETPAEKPAekPAEKPAEKPAETpaETPAEKPAETPAEKPAET 397
Cdd:PRK13108 330 AEAVKAEVAEVTDEVAAESVVQVADRDGESTPAvEETSEADIEREQ--PGDLAGQAPAAH--QVDAEAASAAPEEPAALA 405
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 398 PAETPAETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTPLKELPVVKGPSTNRLW 452
Cdd:PRK13108 406 SEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRRRRW 460
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
322-412 |
8.60e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.44 E-value: 8.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 322 PAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEkPAEKPAEKPAETPAETPAEKPAETPAEKPA-ETPAE 400
Cdd:PRK07764 417 PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA-AAPSAQPAPAPAAAPEPTAAPAPAPPAAPApAAAPA 495
|
90
....*....|..
gi 52550759 401 TPAETPAEKPAS 412
Cdd:PRK07764 496 APAAPAAPAGAD 507
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
319-411 |
8.62e-06 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.88 E-value: 8.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETP 398
Cdd:PRK09510 135 EEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE 214
|
90
....*....|...
gi 52550759 399 AETPAETPAEKPA 411
Cdd:PRK09510 215 AKKKAAAEAKAAA 227
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
318-412 |
9.72e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 48.31 E-value: 9.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAET 397
Cdd:PRK07003 402 VTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPA 481
|
90 100
....*....|....*....|
gi 52550759 398 PAETPA-----ETPAEKPAS 412
Cdd:PRK07003 482 SDAPPDaafepAPRAAAPSA 501
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
319-413 |
1.00e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.49 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETpAEKPAETP 398
Cdd:PRK09510 159 AAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK-AAAEAKAA 237
|
90
....*....|....*
gi 52550759 399 AETPAETPAEKPASR 413
Cdd:PRK09510 238 AEKAAAAKAAEKAAA 252
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
319-411 |
1.01e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.49 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETP 398
Cdd:PRK09510 139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
|
90
....*....|...
gi 52550759 399 AETPAETPAEKPA 411
Cdd:PRK09510 219 AAAEAKAAAAKAA 231
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
341-413 |
1.04e-05 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 47.75 E-value: 1.04e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 52550759 341 KPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPAEKPASR 413
Cdd:PTZ00144 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETR 191
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
325-418 |
1.12e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.40 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 325 TPAEAPAETPAETPAEKPAEK-PAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAeTPA 403
Cdd:PHA03247 2762 TTAGPPAPAPPAAPAAGPPRRlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT-APP 2840
|
90
....*....|....*
gi 52550759 404 ETPAEKPASRPCYGG 418
Cdd:PHA03247 2841 PPPGPPPPSLPLGGS 2855
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
317-414 |
1.39e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 47.54 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKP-AETPAEKPA 395
Cdd:PRK07003 413 KAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASdAPPDAAFEP 492
|
90 100
....*....|....*....|.
gi 52550759 396 ETPA--ETPAETPAEKPASRP 414
Cdd:PRK07003 493 APRAaaPSAATPAAVPDARAP 513
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
326-456 |
2.48e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.24 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 326 PAEAPAETPAeTPAEKPAEK---PAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETP 402
Cdd:PHA03247 2867 PSRSPAAKPA-APARPPVRRlarPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 403 AETPAEKP-----ASRPCYGGRKGEEVVVLQTTSTKQTPLKELPvvkGPSTNRLWHENV 456
Cdd:PHA03247 2946 TTDPAGAGepsgaVPQPWLGALVPGRVAVPRFRVPQPAPSREAP---ASSTPPLTGHSL 3001
|
|
| motB |
PRK05996 |
MotB family protein; |
319-430 |
3.45e-05 |
|
MotB family protein;
Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 45.84 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEK--PAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK05996 197 DLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIAdaKKAATGEPAANAAKAAKPEPMPDDQQKEAEQ 276
|
90 100 110
....*....|....*....|....*....|....
gi 52550759 397 TPAETPAETPAEKPASRPCYGGRKGEEVVVLQTT 430
Cdd:PRK05996 277 LQAAIAQAIGGVAGKLAEGVTVTPVEGGLLISLT 310
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
323-409 |
3.87e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 45.95 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 323 AETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETP 402
Cdd:PRK09510 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAA 226
|
....*..
gi 52550759 403 AETPAEK 409
Cdd:PRK09510 227 AAKAAAE 233
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
317-441 |
4.07e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.13 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK07764 624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP 703
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 52550759 397 TPAETPAETPAEKPASRPCYGGRKGEEVvvlQTTSTKQTPLKELP 441
Cdd:PRK07764 704 APAATPPAGQADDPAAQPPQAAQGASAP---SPAADDPVPLPPEP 745
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
319-411 |
4.30e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 46.24 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEK--PAEKPAEKPA--ETPAETPAEKPAEKPAEKPAeKPAETPAE-----TPAEKPAET 389
Cdd:PRK08691 391 AKKPQPRPEAETAQTPVQTASAAamPSEGKTAGPVsnQENNDVPPWEDAPDEAQTAA-GTAQTSAKsiqtaSEAETPPEN 469
|
90 100
....*....|....*....|....*
gi 52550759 390 PAEKPAETPAETPA---ETPAEKPA 411
Cdd:PRK08691 470 QVSKNKAADNETDAplsEVPSENPI 494
|
|
| PRK13808 |
PRK13808 |
adenylate kinase; Provisional |
317-424 |
4.46e-05 |
|
adenylate kinase; Provisional
Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 45.26 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPA--EKPAETPAETPAeKPAEKPAEKPAEKPAETPAETpAEKPAETPAEKP 394
Cdd:PRK13808 205 TPAAKSGAKKASAKAKSAAKKVSKKKAAKTAvsAKKAAKTAAKAA-KKAKKTAKKALKKAAKAVKKA-AKKAAKAAAKAA 282
|
90 100 110
....*....|....*....|....*....|
gi 52550759 395 AETPAETPAETPAEKPASRPCYGGRKGEEV 424
Cdd:PRK13808 283 KGAAKATKGKAKAKKKAGKKAAAGSKAKAT 312
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
323-413 |
4.68e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 46.21 E-value: 4.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 323 AETPAEAPAETPAETPAEKPAEKP--AEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETP-A 399
Cdd:PHA03378 694 MQPPPRAPTPMRPPAAPPGRAQRPaaATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPgA 773
|
90
....*....|....
gi 52550759 400 ETPAETPAEKPASR 413
Cdd:PHA03378 774 PTPQPPPQAPPAPQ 787
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
319-411 |
5.00e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 45.57 E-value: 5.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETpAEKPAETPAEKPAETP 398
Cdd:PRK09510 167 AKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK-AAAEAKAAAEKAAAAK 245
|
90
....*....|...
gi 52550759 399 AETPAETPAEKPA 411
Cdd:PRK09510 246 AAEKAAAAKAAAE 258
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
319-379 |
6.04e-05 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 45.76 E-value: 6.04e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAekPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPA 379
Cdd:COG5373 44 ASAPAEPEPEAAAAATAAAPEAAPA--PVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
358-414 |
6.11e-05 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 45.06 E-value: 6.11e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 52550759 358 PAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPAEKPASRP 414
Cdd:PTZ00144 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
317-439 |
6.22e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 45.63 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK07994 382 QATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLAS 461
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 52550759 397 TPAEtpAETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTPLKE 439
Cdd:PRK07994 462 VRPA--PSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKK 502
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
319-389 |
6.92e-05 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 44.62 E-value: 6.92e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAekpAETPAETPAEKPAEKP-AEKPAEKPAETPaETPAEKPAET 389
Cdd:PRK13042 30 ATTPSSTKVEAPQSTPPSTKVEAPQSKPN---ATTPPSTKVEAPQQTPnATTPSSTKVETP-QSPTTKQVPT 97
|
|
| PRK13808 |
PRK13808 |
adenylate kinase; Provisional |
328-421 |
9.05e-05 |
|
adenylate kinase; Provisional
Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 44.49 E-value: 9.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 328 EAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPA--EKPAEKPAETPAeTPAEKPAETPAEKPAETPAETPAEt 405
Cdd:PRK13808 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAvsAKKAAKTAAKAA-KKAKKTAKKALKKAAKAVKKAAKK- 273
|
90
....*....|....*.
gi 52550759 406 pAEKPASRPCYGGRKG 421
Cdd:PRK13808 274 -AAKAAAKAAKGAAKA 288
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
318-411 |
9.59e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 44.86 E-value: 9.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETP---AEKP 394
Cdd:PRK07994 407 PQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYrwkATNP 486
|
90
....*....|....*..
gi 52550759 395 AETPAETPAETPAEKPA 411
Cdd:PRK07994 487 VEVKKEPVATPKALKKA 503
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
317-407 |
1.04e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 44.41 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETpAETPAEKPAETPAEKPAE 396
Cdd:PRK09510 169 KKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK-AAAEAKAAAEKAAAAKAA 247
|
90
....*....|.
gi 52550759 397 TPAETPAETPA 407
Cdd:PRK09510 248 EKAAAAKAAAE 258
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
317-414 |
1.11e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.98 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK07764 604 ASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683
|
90
....*....|....*...
gi 52550759 397 TPAETPAETPAEKPASRP 414
Cdd:PRK07764 684 APAPAAPAAPAGAAPAQP 701
|
|
| DedD |
COG3147 |
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
326-393 |
1.16e-04 |
|
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 42.07 E-value: 1.16e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 326 PAEAPAETPAETPA-EKPAEKPAEKPAETPAeTPAEKPAEKPAekpAEKPAETPAETPAEKPAETPAEK 393
Cdd:COG3147 1 PAEEAAAAPAAAAApAAPAAAAAPAPAAAAA-AAAPKPAAKPA---APKPAAAAAAAPAAKAAAPAGGG 65
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
318-414 |
1.22e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.59 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEK-PAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK07764 620 APAAPAAPAPAGAAAAPAEASAAPaPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPA 699
|
90
....*....|....*...
gi 52550759 397 TPAETPAETPAEKPASRP 414
Cdd:PRK07764 700 QPAPAPAATPPAGQADDP 717
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
323-409 |
1.27e-04 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 44.46 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 323 AETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPA-EKPAEKPAETPAETPAE-KPAETPAEKPAETPAE 400
Cdd:COG3266 275 QQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAApQPTAAKPVVTETAAPAApAPEAAAAAAAPAAPAV 354
|
....*....
gi 52550759 401 TPAETPAEK 409
Cdd:COG3266 355 AKKLAADEQ 363
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
328-414 |
1.29e-04 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 44.02 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 328 EAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPA 407
Cdd:PRK12373 227 EVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPA 306
|
....*..
gi 52550759 408 EKPASRP 414
Cdd:PRK12373 307 LEDKPRP 313
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
306-442 |
1.51e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 44.26 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 306 EEPVVEEPVVEKPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPA-EKPA--EKPAEKPAEKPAETPAETP 382
Cdd:PRK10811 871 AEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVtEQPQviTESDVAVAQEVAEHAEPVV 950
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 383 AEKPAETPAEKPAETPAETPAETPAEKPASRPCyggRKGEEVVVLQTTSTKQTPLKELPV 442
Cdd:PRK10811 951 EPQDETADIEEAAETAEVVVAEPEVVAQPAAPV---VAEVAAEVETVTAVEPEVAPAQVP 1007
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
324-412 |
1.58e-04 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 44.02 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 324 ETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETP-AETPAEKPAETPAEKPaETPAETP 402
Cdd:PRK12373 227 EVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPvSGTAAAEPAPKEAAKA-AAAAAKP 305
|
90
....*....|
gi 52550759 403 AETPAEKPAS 412
Cdd:PRK12373 306 ALEDKPRPLG 315
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
318-420 |
1.82e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.60 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETP---AEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAEtPAEKP 394
Cdd:NF040712 223 AEGAPATDSDPAEAGTPDDLAsarRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPA-PAPAA 301
|
90 100
....*....|....*....|....*....
gi 52550759 395 AETPAETPAE---TPAEKPASRPCYGGRK 420
Cdd:NF040712 302 PAAPAAPEAEepaRPEPPPAPKPKRRRRR 330
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
319-412 |
1.88e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 43.64 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAE---KPA 395
Cdd:PRK09510 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAaeaKAA 226
|
90
....*....|....*..
gi 52550759 396 ETPAETPAETPAEKPAS 412
Cdd:PRK09510 227 AAKAAAEAKAAAEKAAA 243
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
323-387 |
1.97e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.84 E-value: 1.97e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 323 AETPAEAPAETPAETPAEKPAEKPAEKPAetPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPA 387
Cdd:COG5373 40 AAEAASAPAEPEPEAAAAATAAAPEAAPA--PVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
318-415 |
2.06e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.07 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPaetPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAET 397
Cdd:PRK07003 369 GGGVPARVAGAVPAPGARAAAAVGASAVPAVTA---VTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADG 445
|
90
....*....|....*...
gi 52550759 398 PAETPAETPAEKPASRPC 415
Cdd:PRK07003 446 DAPVPAKANARASADSRC 463
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
361-414 |
2.17e-04 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 43.52 E-value: 2.17e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 52550759 361 KPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPAEKPASRP 414
Cdd:PTZ00144 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPA 172
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
330-414 |
2.47e-04 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 43.00 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 330 PAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPAEK 409
Cdd:PRK10905 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATST 203
|
....*
gi 52550759 410 PASRP 414
Cdd:PRK10905 204 PAPKE 208
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
347-411 |
2.57e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.45 E-value: 2.57e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 347 AEKPAETPAETPAEKPAEKPAEKPAEKPAetPAETPAEKPAETPAEKPAETPAETPAETPAEKPA 411
Cdd:COG5373 40 AAEAASAPAEPEPEAAAAATAAAPEAAPA--PVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
319-414 |
2.71e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.68 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAetPAEKPAETPAEKPAETP 398
Cdd:PRK07003 387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA--PVPAKANARASADSRCD 464
|
90
....*....|....*.
gi 52550759 399 AETPAETPAEKPASRP 414
Cdd:PRK07003 465 ERDAQPPADSGSASAP 480
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
318-429 |
2.77e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 43.42 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAeKPAEKPAEKPAETP--AETPAEKPAEKPAeKPAEKPAETPAETPAEKPAETPAEKPA 395
Cdd:PRK06995 56 AAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAkrLTAQREQLVARAA-APAAPEAQAPAAPAERAAAENAARRLA 133
|
90 100 110
....*....|....*....|....*....|....
gi 52550759 396 ETPAETPAETPAEKPASRPCYGGRKGEEVVVLQT 429
Cdd:PRK06995 134 RAAAAAPRPRVPADAAAAVADAVKARIERIVNDT 167
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
318-413 |
3.16e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.26 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAeTPAEKPAEKPAEKPAETPAETPAeKPAEKPAEKPAEKPAETP-AETPAEKPAETPAEKPAE 396
Cdd:PRK14950 362 PVPAPQPAKPTAAAPSPV-RPTPAPSTRPKAAAAANIPPKEP-VRETATPPPVPPRPVAPPvPHTPESAPKLTRAAIPVD 439
|
90
....*....|....*..
gi 52550759 397 TPAETPAetPAEKPASR 413
Cdd:PRK14950 440 EKPKYTP--PAPPKEEE 454
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
325-397 |
3.30e-04 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 42.70 E-value: 3.30e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 325 TPAEAPAETPAETPAEKPAEKPAEKPAETPAETP-AEKPAEKPAEKPAEKP-AETPAETPAEKPaETPAEKPAET 397
Cdd:PRK13042 24 TTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPnATTPPSTKVEAPQQTPnATTPSSTKVETP-QSPTTKQVPT 97
|
|
| DedD |
COG3147 |
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
318-378 |
3.33e-04 |
|
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 40.91 E-value: 3.33e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 52550759 318 PAEKPAETPAEAPA-ETPAETPAEKPAEKPAeKPAETPAETP-AEKPAEKPAEKPAEKPAETP 378
Cdd:COG3147 1 PAEEAAAAPAAAAApAAPAAAAAPAPAAAAA-AAAPKPAAKPaAPKPAAAAAAAPAAKAAAPA 62
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
347-411 |
3.36e-04 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 42.70 E-value: 3.36e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52550759 347 AEKPAETPAETPAEKPAEKPAEKPAEKP-AETPAETPAEKPAETP-AEKPAETPAETPaETPAEKPA 411
Cdd:PRK13042 30 ATTPSSTKVEAPQSTPPSTKVEAPQSKPnATTPPSTKVEAPQQTPnATTPSSTKVETP-QSPTTKQV 95
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
351-413 |
3.42e-04 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 42.31 E-value: 3.42e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 351 AETPAETPAEKPAEKPAEKPAEKPAETP-AETPAEKPAETPAEKP-AETPAETPAETPaEKPASR 413
Cdd:PRK13042 30 ATTPSSTKVEAPQSTPPSTKVEAPQSKPnATTPPSTKVEAPQQTPnATTPSSTKVETP-QSPTTK 93
|
|
| valS |
PRK14900 |
valyl-tRNA synthetase; Provisional |
319-413 |
3.46e-04 |
|
valyl-tRNA synthetase; Provisional
Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 43.44 E-value: 3.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAP-AETPAETPA--------EKPAEKPAEKPAETPAETpAEKPAEKPAEK--PAEKPAETPAETPAEKPA 387
Cdd:PRK14900 945 AEKAVAAVSEAAqQAATAVASGiekvaeavRKTVRRSVKKAAATRAAM-KKKVAKKAPAKkaAAKKAAAKKAAAKKKVAK 1023
|
90 100
....*....|....*....|....*..
gi 52550759 388 ETPAEKPAETPA-ETPAETPAEKPASR 413
Cdd:PRK14900 1024 KAPAKKVARKPAaKKAAKKPARKAAGR 1050
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
337-407 |
3.57e-04 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.57 E-value: 3.57e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 52550759 337 TPAEKPAEKPAEKPaeTPAETPAEKPAEKPAEKPAekpAETPAETPAEKPAETPAEKPAETPAETPAETPA 407
Cdd:TIGR00601 82 GKVAPPAATPTSAP--TPTPSPPASPASGMSAAPA---SAVEEKSPSEESATATAPESPSTSVPSSGSDAA 147
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
238-407 |
3.82e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.10 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 238 PVAEePSDVTVTAPEEcEEEIVINPEEENKPDSSSSSSSSSSSSSESDSDEEDREPVVEEPIVEEPVVEEPVVEEPVVEK 317
Cdd:PRK10811 846 PVVR-PQDVQVEEQRE-AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAP 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAetPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEkpAETPAETPAEKPAETPAEKPAET 397
Cdd:PRK10811 924 VTEQPQ--VITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVV--AQPAAPVVAEVAAEVETVTAVEP 999
|
170
....*....|
gi 52550759 398 PAETPAETPA 407
Cdd:PRK10811 1000 EVAPAQVPEA 1009
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
341-412 |
4.11e-04 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.57 E-value: 4.11e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52550759 341 KPAEKPAEKPAETPAETPAekPAEKPAEKPAEKPAETPAETPAEKpaeTPAEKPAETPAETPAETPAEKPAS 412
Cdd:TIGR00601 78 KTGTGKVAPPAATPTSAPT--PTPSPPASPASGMSAAPASAVEEK---SPSEESATATAPESPSTSVPSSGS 144
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
323-454 |
4.24e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.77 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 323 AETPAEAPA-----------------ETPA-ETPAEKPAEKPAEKPAETPAETPAEK--PAEKPAEKPA--EKPAETPAE 380
Cdd:PRK08691 357 AFAPLAAAScdanavientelqspsaQTAEkETAAKKPQPRPEAETAQTPVQTASAAamPSEGKTAGPVsnQENNDVPPW 436
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 381 TPAEKPAETPAeKPAETPAE-----TPAETPAEKPASRpcyGGRKGEEVVVLQTTSTKQTPLKELPVVKGPSTNRLWHE 454
Cdd:PRK08691 437 EDAPDEAQTAA-GTAQTSAKsiqtaSEAETPPENQVSK---NKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHE 511
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
317-401 |
4.25e-04 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 42.79 E-value: 4.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PHA03269 67 KPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQH 146
|
....*
gi 52550759 397 TPAET 401
Cdd:PHA03269 147 SPPPF 151
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
327-391 |
4.35e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.07 E-value: 4.35e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 327 AEAPAETPAETPAEKPAEKPAEKPAETPAetPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPA 391
Cdd:COG5373 40 AAEAASAPAEPEPEAAAAATAAAPEAAPA--PVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
318-414 |
4.82e-04 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 42.53 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPA-ETPAEKPAETPAEKPAE 396
Cdd:COG3266 258 PSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAApQPTAAKPVVTETAAPAA 337
|
90
....*....|....*....
gi 52550759 397 -TPAETPAETPAEKPASRP 414
Cdd:COG3266 338 pAPEAAAAAAAPAAPAVAK 356
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
318-419 |
4.91e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.00 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKP--AETPAETPAEKPAETPAEKPA 395
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPpsPLPPDTHAPDPPPPSPSPAAN 2636
|
90 100
....*....|....*....|....
gi 52550759 396 ETPAETPAETPAEKPASRPCYGGR 419
Cdd:PHA03247 2637 EPDPHPPPTVPPPERPRDDPAPGR 2660
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
319-411 |
5.02e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.10 E-value: 5.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAEtpaEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETP 398
Cdd:PRK09510 130 KQKQAE---EAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
|
90
....*....|...
gi 52550759 399 AETPAETPAEKPA 411
Cdd:PRK09510 207 AKKKAAAEAKKKA 219
|
|
| PRK01297 |
PRK01297 |
ATP-dependent RNA helicase RhlB; Provisional |
318-375 |
5.04e-04 |
|
ATP-dependent RNA helicase RhlB; Provisional
Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 42.59 E-value: 5.04e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 318 PAEKPAETPAEAPAETPAETPAeKPAEKPAEKPAETPAETPAEKP-AEKPAEKPAEKPA 375
Cdd:PRK01297 13 EAEQPAPAPPSPAAAPAPPPPA-KTAAPATKAAAPAAAAPRAEKPkKDKPRRERKPKPA 70
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
318-414 |
5.17e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAET 397
Cdd:PRK07764 613 ARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA 692
|
90
....*....|....*..
gi 52550759 398 PAETPAETPAEKPASRP 414
Cdd:PRK07764 693 PAGAAPAQPAPAPAATP 709
|
|
| DedD |
COG3147 |
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
346-413 |
5.18e-04 |
|
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 40.14 E-value: 5.18e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 346 PAEKPAETPAETPA-EKPAEKPAEKPAEKPAeTPAETPAEKPAetpAEKPAETPAETPAETPAEKPASR 413
Cdd:COG3147 1 PAEEAAAAPAAAAApAAPAAAAAPAPAAAAA-AAAPKPAAKPA---APKPAAAAAAAPAAKAAAPAGGG 65
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
325-414 |
5.44e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.49 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 325 TPAEAPAETPAETPAEKPA-EKPAEKPAETPAETPAEKPAE-KPAEKPAEKPAETPAETPaekPAETPAEKPAETPAETP 402
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVrPTPAPSTRPKAAAAANIPPKEpVRETATPPPVPPRPVAPP---VPHTPESAPKLTRAAIP 437
|
90
....*....|..
gi 52550759 403 AETPAEKPASRP 414
Cdd:PRK14950 438 VDEKPKYTPPAP 449
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
335-403 |
5.77e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 42.68 E-value: 5.77e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 335 AETPAEKPAEKPAEKPAETPAETPAEKPAekpaekPAEKPAETPAETPAEKPAETPAEKPAETPAETPA 403
Cdd:COG5373 40 AAEAASAPAEPEPEAAAAATAAAPEAAPA------PVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
318-419 |
6.52e-04 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 41.21 E-value: 6.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETP-AEAPAETPAETPAEKPAEKPAEKPaeTPAETPAEKPaEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK10819 74 PEPEPEPIPePPKEAPVVIPKPEPKPKPKPKPKP--KPVKKVEEQP-KREVKPVEPRPASPFENTAPARPTSSTATAAAS 150
|
90 100
....*....|....*....|....*
gi 52550759 397 TPAETPAETPaeKPASR--PCYGGR 419
Cdd:PRK10819 151 KPVTSVSSGP--RALSRnqPQYPAR 173
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
321-414 |
6.68e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 42.24 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 321 KPAETPAEAPAETPaetPAEKPAEKPAekPAETPAETPAEKPaEKPAEKPAEKPAETPAETPAEKPaetPAEKPAETPAE 400
Cdd:PRK14954 375 RNDGGVAPSPAGSP---DVKKKAPEPD--LPQPDRHPGPAKP-EAPGARPAELPSPASAPTPEQQP---PVARSAPLPPS 445
|
90
....*....|....
gi 52550759 401 TPAETPAEKPASRP 414
Cdd:PRK14954 446 PQASAPRNVASGKP 459
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
343-407 |
7.16e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 42.29 E-value: 7.16e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 343 AEKPAEKPAETPAETPAEKPAEKPAEKPAekPAETPAETPAEKPAETPAEKPAETPAETPAETPA 407
Cdd:COG5373 40 AAEAASAPAEPEPEAAAAATAAAPEAAPA--PVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
|
|
| PRK11907 |
PRK11907 |
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase; |
319-408 |
7.39e-04 |
|
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
Pssm-ID: 237019 [Multi-domain] Cd Length: 814 Bit Score: 42.15 E-value: 7.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEApaeTPAETPAEKPAEKPAEKPAE-TPAETPAEKPAEKPAEKPAekpAETPAETPAEKPAeTPAEKPAET 397
Cdd:PRK11907 27 QAEEIVTTTPA---TSTEAEQTTPVESDATEEADnTETPVAATTAAEAPSSSET---AETSDPTSEATDT-TTSEARTVT 99
|
90
....*....|.
gi 52550759 398 PAETPAETPAE 408
Cdd:PRK11907 100 PAATETSKPVE 110
|
|
| PRK01297 |
PRK01297 |
ATP-dependent RNA helicase RhlB; Provisional |
322-379 |
7.45e-04 |
|
ATP-dependent RNA helicase RhlB; Provisional
Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 41.82 E-value: 7.45e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 322 PAETPAEAPAeTPAETPAEKPAEKPAEKPAETPAETPAEKPAEKP-AEKPAEKPAETPA 379
Cdd:PRK01297 13 EAEQPAPAPP-SPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPkKDKPRRERKPKPA 70
|
|
| PRK01297 |
PRK01297 |
ATP-dependent RNA helicase RhlB; Provisional |
335-395 |
7.78e-04 |
|
ATP-dependent RNA helicase RhlB; Provisional
Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 41.82 E-value: 7.78e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52550759 335 AETPAEKPAEKPAEKPAETPAETPAeKPAEKPAEKPAEKPAETPAETP-AEKPAETPAEKPA 395
Cdd:PRK01297 10 GKGEAEQPAPAPPSPAAAPAPPPPA-KTAAPATKAAAPAAAAPRAEKPkKDKPRRERKPKPA 70
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
225-410 |
8.86e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 41.95 E-value: 8.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 225 NVTQPAIPTIPEQPVAEEPSDVTVTAPEECEEEIVINPEEENKPDSSSSSSSSSSSSSESDSDEEDREPVVEEPIVEEpv 304
Cdd:PRK10811 861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAV-- 938
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 305 veepvveepvvekpAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAE 384
Cdd:PRK10811 939 --------------AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004
|
170 180
....*....|....*....|....*.
gi 52550759 385 KPAETPAEKPAETPAETPAETPAEKP 410
Cdd:PRK10811 1005 QVPEATVEHNHATAPMTRAPAPEYVP 1030
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
318-411 |
8.99e-04 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 41.33 E-value: 8.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEK-PAETPAetPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK12373 230 LLAPWQGDAAPVPPSEAARPKSADAETNAALKtPATAPK--AAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPAL 307
|
90
....*....|....*
gi 52550759 397 TPAETPAEtpAEKPA 411
Cdd:PRK12373 308 EDKPRPLG--IARPG 320
|
|
| DedD |
COG3147 |
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
334-402 |
9.01e-04 |
|
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 39.37 E-value: 9.01e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 334 PAETPAEKPAEKPAekpAETPAETPAEKPAEKPAeKPAEKPAETPAetpAEKPAETPAEKPAETPAETP 402
Cdd:COG3147 1 PAEEAAAAPAAAAA---PAAPAAAAAPAPAAAAA-AAAPKPAAKPA---APKPAAAAAAAPAAKAAAPA 62
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
320-414 |
9.29e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.90 E-value: 9.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 320 EKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEkPAEKPAEKPAETPAETPAEKPAETPAekPAETPA 399
Cdd:PRK07764 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAA-PAEASAAPAPGVAAPEHHPKHVAVPD--ASDGGD 667
|
90
....*....|....*
gi 52550759 400 ETPAETPAEKPASRP 414
Cdd:PRK07764 668 GWPAKAGGAAPAAPP 682
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
318-401 |
9.34e-04 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 41.37 E-value: 9.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAetPAETPAEKPAETPAEKPAET 397
Cdd:COG3266 282 PAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAPA--PEAAAAAAAPAAPAVAKKLA 359
|
....
gi 52550759 398 PAET 401
Cdd:COG3266 360 ADEQ 363
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
325-436 |
9.50e-04 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 41.64 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 325 TPAEAPaETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAET----PAEKPAETPAEKPAETPAE 400
Cdd:PHA03269 24 TNIPIP-ELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASekfdPAPAPHQAASRAPDPAVAP 102
|
90 100 110
....*....|....*....|....*....|....*.
gi 52550759 401 TPAETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTP 436
Cdd:PHA03269 103 QLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKP 138
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
323-441 |
1.00e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.59 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 323 AETPAEAPAETPAETPAEKPAEKPAEKPAETP-AETPAEKPAEKPAekPAEKPAETPaeTPAEKPAETPAEKPAETPAET 401
Cdd:PHA03378 740 APGRARPPAAAPGRARPPAAAPGRARPPAAAPgAPTPQPPPQAPPA--PQQRPRGAP--TPQPPPQAGPTSMQLMPRAAP 815
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 52550759 402 PAETPAEKPASRPCYGG-RKGEEVVVLQTTSTKQTPLKELP 441
Cdd:PHA03378 816 GQQGPTKQILRQLLTGGvKRGRPSLKKPAALERQAAAGPTP 856
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
371-444 |
1.02e-03 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 41.16 E-value: 1.02e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52550759 371 AEKPAETPAETPAEKPAETPAEKPAETP-AETPAETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTPLKELPVVK 444
Cdd:PRK13042 30 ATTPSSTKVEAPQSTPPSTKVEAPQSKPnATTPPSTKVEAPQQTPNATTPSSTKVETPQSPTTKQVPTEINPKFK 104
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
318-407 |
1.06e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 41.64 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETpaEKPAEKPAEKPAETPAETPAEKPAEKPAEKPaeKPAETPAETPAEKPAetPAEKPAET 397
Cdd:PHA03269 60 PTSAASRKPDLAQAPTPAAS--EKFDPAPAPHQAASRAPDPAVAPQLAAAPKP--DAAEAFTSAAQAHEA--PADAGTSA 133
|
90
....*....|
gi 52550759 398 PAETPaeTPA 407
Cdd:PHA03269 134 ASKKP--DPA 141
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
317-374 |
1.15e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 41.56 E-value: 1.15e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 317 KPAEKPA----ETPAEAPAETPAETPAEKPAEKPAEKPAETPAE-----------------TPAEKPAEKPAEKPAEKP 374
Cdd:PRK10811 522 KRPEQPAlatfAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQpgllsrffgalkalfsgGEETKPQEQPAPKAEAKP 600
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
322-414 |
1.17e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 322 PAETPAEAPAETPAETPAEKPAEKPAEkPAETPAETPAEKPAEKPAEK----PAEKPAETPAETPAeKPAETPAEKPAET 397
Cdd:PHA03247 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSE-PAVTSRARRPDAPPQSARPRapvdDRGDPRGPAPPSPL-PPDTHAPDPPPPS 2630
|
90
....*....|....*..
gi 52550759 398 PAETPAETPAEKPASRP 414
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVP 2647
|
|
| SAV_2336_NTERM |
NF041121 |
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
335-414 |
1.27e-03 |
|
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.
Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 41.14 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 335 AETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAeTPAETPAETPAEKPASRP 414
Cdd:NF041121 16 GRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPP-PPGPAGAAPGAALPVRVP 94
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
329-395 |
1.44e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 41.14 E-value: 1.44e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52550759 329 APAETPAETPAEKPAEKPAEKPAETPAETPAekPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPA 395
Cdd:COG5373 38 AEAAEAASAPAEPEPEAAAAATAAAPEAAPA--PVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPA 102
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
317-414 |
1.49e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.31 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PHA03307 113 SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAE 192
|
90
....*....|....*...
gi 52550759 397 TPAETPAETPAEKPASRP 414
Cdd:PHA03307 193 PPPSTPPAAASPRPPRRS 210
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
319-413 |
1.52e-03 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 40.99 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAP---AETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPA-EKP 394
Cdd:COG3266 264 ASAPATTSLGEQqevSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAPApEAA 343
|
90
....*....|....*....
gi 52550759 395 AETPAETPAETPAEKPASR 413
Cdd:COG3266 344 AAAAAPAAPAVAKKLAADE 362
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
312-448 |
1.76e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 41.18 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 312 EPV-VEKPAEKPAETPAEAPAETPAETPAEKPA-EKPAEKPAETPAETPAEKPAEKPA-EKPAE-KPAETPAETPAEKPA 387
Cdd:PRK10811 867 QPVvAEVPVAAAVEPVVSAPVVEAVAEVVEEPVvVAEPQPEEVVVVETTHPEVIAAPVtEQPQViTESDVAVAQEVAEHA 946
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 52550759 388 ETPAEKPAETPAETPAETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTPLKELPVVKGPST 448
Cdd:PRK10811 947 EPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
323-418 |
1.79e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.08 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 323 AETPAEAPAETPAETPAEKPaekpaeKPAETPAETPAEKPAEKPAEKPAEKPAeTPAETPAEKPAETPAEKPAET----- 397
Cdd:PHA03247 409 APVPASVPTPAPTPVPASAP------PPPATPLPSAEPGSDDGPAPPPERQPP-APATEPAPDDPDDATRKALDAlrerr 481
|
90 100
....*....|....*....|.
gi 52550759 398 PAETPAETPAEKPASRPCYGG 418
Cdd:PHA03247 482 PPEPPGADLAELLGRHPDTAG 502
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
248-413 |
1.87e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.79 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 248 VTAPEECEEEivinpeEENKPDSSSSSSSSSSSSSESDSDEEDREPVVEEPIVEEPVVEEPVVEEPVVEKPAEKPAETPA 327
Cdd:PRK10811 847 VVRPQDVQVE------EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 328 EAP--AETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETP---AETPAEKPAETPAEKPAETPAETP 402
Cdd:PRK10811 921 AAPvtEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPevvAQPAAPVVAEVAAEVETVTAVEPE 1000
|
170
....*....|.
gi 52550759 403 AETPAEKPASR 413
Cdd:PRK10811 1001 VAPAQVPEATV 1011
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
323-414 |
2.02e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 40.63 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 323 AETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAE-TPAETPAEKPAETPAEKPAETPAet 401
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPA-- 449
|
90
....*....|...
gi 52550759 402 PAETPAEKPASRP 414
Cdd:PRK12323 450 PAPAPAAAPAAAA 462
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
317-413 |
2.08e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 40.33 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAeTPAEKPAEKPAEKPAETPAET-PAEKPAEKPAEKPAEKPAetpaeTPAEKPAETPAEKPA 395
Cdd:PRK06995 59 PAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQReQLVARAAAPAAPEAQAPA-----APAERAAAENAARRL 132
|
90
....*....|....*...
gi 52550759 396 ETPAETPAETPAEKPASR 413
Cdd:PRK06995 133 ARAAAAAPRPRVPADAAA 150
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
319-414 |
2.22e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.60 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAetpAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAE-KPAETPAEKPAET 397
Cdd:PRK07003 357 AFEPAVTGGGAPG---GGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAaTRAEAPPAAPAPP 433
|
90
....*....|....*..
gi 52550759 398 PAETPAETPAEKPASRP 414
Cdd:PRK07003 434 ATADRGDDAADGDAPVP 450
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
325-437 |
2.23e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 40.17 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 325 TPAEAPAETPAETPAEKPAEKPAEKP--AETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETP 402
Cdd:PRK12373 198 TEEAGKARYNASKALAEDIGDTVKRIdgTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAP 277
|
90 100 110
....*....|....*....|....*....|....*
gi 52550759 403 AETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTPL 437
Cdd:PRK12373 278 EAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPR 312
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
318-400 |
2.33e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.62 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAeKPAEKPAEKPAETPAETPAEKPAETP--AEKPA 395
Cdd:PRK07994 439 KKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKAT-NPVEVKKEPVATPKALKKALEHEKTPelAAKLA 517
|
....*
gi 52550759 396 ETPAE 400
Cdd:PRK07994 518 AEAIE 522
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
318-395 |
2.38e-03 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 38.18 E-value: 2.38e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAetpaetPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPA 395
Cdd:pfam05104 69 PDEAPSAALEPEPVPTPVPAPVEPEPAPPSESPA------PSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
318-411 |
2.45e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.23 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAeTPAETPAEKPAETPAEKPAET 397
Cdd:PRK07994 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKAT-NPVEVKKEPVATPKALKKALE 505
|
90
....*....|....
gi 52550759 398 PAETPAetPAEKPA 411
Cdd:PRK07994 506 HEKTPE--LAAKLA 517
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
317-404 |
2.84e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 40.18 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAeKPAETPAETPAEKPAEKPaekPAEKPAETPAETPAEKPAEtpaEKPAE 396
Cdd:PRK14950 372 TAAAPSPVRPTPAPSTRPKAAAAANIPPKEP-VRETATPPPVPPRPVAPP---VPHTPESAPKLTRAAIPVD---EKPKY 444
|
....*...
gi 52550759 397 TPAETPAE 404
Cdd:PRK14950 445 TPPAPPKE 452
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
339-415 |
3.01e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 39.95 E-value: 3.01e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52550759 339 AEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPAEKPASRPC 415
Cdd:PRK14948 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437
|
|
| PRK13808 |
PRK13808 |
adenylate kinase; Provisional |
317-413 |
3.14e-03 |
|
adenylate kinase; Provisional
Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 39.49 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPaeKPAEKPAEKPAETPAETPaekpaeKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK13808 243 KTAAKAAKKAKKTAKKALKKAA--KAVKKAAKKAAKAAAKAA------KGAAKATKGKAKAKKKAGKKAAAGSKAKATAK 314
|
90
....*....|....*..
gi 52550759 397 TPAETPAETPAEKPASR 413
Cdd:PRK13808 315 APKRGAKGKKAKKVTKK 331
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
333-401 |
3.16e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 39.88 E-value: 3.16e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 333 TPAETPAEKPAEKPAekPAETPAETPAEKPAEKPAE-KPAEKPAETPAETPAEKPAETPAEKPAETPAET 401
Cdd:TIGR00601 82 GKVAPPAATPTSAPT--PTPSPPASPASGMSAAPASaVEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
321-406 |
3.22e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 40.10 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 321 KPAETPAEAPAETPaeTPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAetPAEKPAETPAEKPaeTPAE 400
Cdd:PHA03269 69 DLAQAPTPAASEKF--DPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEA--PADAGTSAASKKP--DPAA 142
|
....*.
gi 52550759 401 TPAETP 406
Cdd:PHA03269 143 HTQHSP 148
|
|
| motB |
PRK05996 |
MotB family protein; |
317-404 |
3.29e-03 |
|
MotB family protein;
Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 39.68 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETP--AEAPAETPAETPAEKPAEKPAEKPAET-PAETPAEKPAEKPAEKPAEKPAETPAETpAEKPAETPAEK 393
Cdd:PRK05996 213 SATAAPATVPqaAPLPQAQPKKAATEEELIADAKKAATGePAANAAKAAKPEPMPDDQQKEAEQLQAA-IAQAIGGVAGK 291
|
90
....*....|.
gi 52550759 394 PAETPAETPAE 404
Cdd:PRK05996 292 LAEGVTVTPVE 302
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
317-449 |
3.66e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.92 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEkPAETPAETPAEKPAeKPAEKPAEKPAETPAETPAEKPAETPAEKPae 396
Cdd:PHA03247 2572 RPAPRPSEPAVTSRARRPDAPPQSARPRAPVD-DRGDPRGPAPPSPL-PPDTHAPDPPPPSPSPAANEPDPHPPPTVP-- 2647
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 52550759 397 tPAETPAETPAEKPASRPCYGGRKGEEVvvlQTTSTKQTPLKE-LPVVKGPSTN 449
Cdd:PHA03247 2648 -PPERPRDDPAPGRVSRPRRARRLGRAA---QASSPPQRPRRRaARPTVGSLTS 2697
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
335-412 |
4.08e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 39.56 E-value: 4.08e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 52550759 335 AETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAETPAETPAETPAEKPAS 412
Cdd:PRK14948 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438
|
|
| PHA01929 |
PHA01929 |
putative scaffolding protein |
318-395 |
4.91e-03 |
|
putative scaffolding protein
Pssm-ID: 177328 Cd Length: 306 Bit Score: 38.88 E-value: 4.91e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPA 395
Cdd:PHA01929 47 PQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPAAPPAAGAALPEALEVPPPPAFTPNGEIVGTLAGNLEGDPQLAPS 124
|
|
| SAV_2336_NTERM |
NF041121 |
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
317-400 |
5.24e-03 |
|
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.
Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 39.22 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPaekPAEKPAetPAETPAEKPAETPAEKPAE 396
Cdd:NF041121 26 GPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPP---PPPGPA--GAAPGAALPVRVPAPPALP 100
|
....
gi 52550759 397 TPAE 400
Cdd:NF041121 101 NPLE 104
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
322-448 |
5.38e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.54 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 322 PAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAET---PAEKPAETPAEKPAETP 398
Cdd:PHA03247 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTagpPAPAPPAAPAAGPPRRL 2783
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 52550759 399 AETPAETPAEKPASRPCYGGRKGEEVVVLQTTSTKQTPLKELPVVKGPST 448
Cdd:PHA03247 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833
|
|
| PHA01929 |
PHA01929 |
putative scaffolding protein |
318-414 |
5.81e-03 |
|
putative scaffolding protein
Pssm-ID: 177328 Cd Length: 306 Bit Score: 38.88 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETP--AEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPA 395
Cdd:PHA01929 21 PAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPtsAMTPHVVQQAPAQPAPAAPPAAGAALPEALEVPPPPA 100
|
90
....*....|....*....
gi 52550759 396 ETPAETPAETPAEKPASRP 414
Cdd:PHA01929 101 FTPNGEIVGTLAGNLEGDP 119
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
317-395 |
6.07e-03 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 38.77 E-value: 6.07e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPA 395
Cdd:PRK10905 151 PATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAA 229
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
318-393 |
6.17e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 39.18 E-value: 6.17e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETP-AETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEK 393
Cdd:PRK14948 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQaATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSL 439
|
|
| PRK11901 |
PRK11901 |
hypothetical protein; Reviewed |
333-403 |
6.39e-03 |
|
hypothetical protein; Reviewed
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 38.51 E-value: 6.39e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 52550759 333 TPAETPAeKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPaeTPAEKPAETPAEKPAETPAETPA 403
Cdd:PRK11901 176 TAPATVA-PSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAV--PPATSGKPKSGAASARALSSAPA 243
|
|
| rpsP |
PRK14521 |
30S ribosomal protein S16; Provisional |
320-400 |
6.74e-03 |
|
30S ribosomal protein S16; Provisional
Pssm-ID: 237744 [Multi-domain] Cd Length: 186 Bit Score: 37.83 E-value: 6.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 320 EKPAETPAEAPAETPAETpAEKPAEKPAEKPA-ETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAEtpaEKPAETP 398
Cdd:PRK14521 109 EKEGKVNAKKDKLSKAKK-AAKKAALEAEKKVnEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE---EAPAEES 184
|
..
gi 52550759 399 AE 400
Cdd:PRK14521 185 AE 186
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
317-412 |
7.16e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 38.69 E-value: 7.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEkPAETPAEAPAETPAeTPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK07994 360 HPAA-PLPEPEVPPQSAAP-AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
|
90
....*....|....*.
gi 52550759 397 TPAETPAETPAEKPAS 412
Cdd:PRK07994 438 AKKSEPAAASRARPVN 453
|
|
| rpsP |
PRK14521 |
30S ribosomal protein S16; Provisional |
344-408 |
7.26e-03 |
|
30S ribosomal protein S16; Provisional
Pssm-ID: 237744 [Multi-domain] Cd Length: 186 Bit Score: 37.45 E-value: 7.26e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 52550759 344 EKPAEKPAETPAETPA-EKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPAEtpaETPAETPAE 408
Cdd:PRK14521 124 AKKAAKKAALEAEKKVnEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE---EAPAEESAE 186
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
328-398 |
7.26e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 38.87 E-value: 7.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 328 EAPAETPA-ETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKPAETP-------------AETPAEKPAETPAEK 393
Cdd:PRK10811 516 EEFAERKRpEQPALATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQPGllsrffgalkalfSGGEETKPQEQPAPK 595
|
....*
gi 52550759 394 PAETP 398
Cdd:PRK10811 596 AEAKP 600
|
|
| PRK11901 |
PRK11901 |
hypothetical protein; Reviewed |
345-407 |
8.54e-03 |
|
hypothetical protein; Reviewed
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 38.13 E-value: 8.54e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 52550759 345 KPAEKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAekPAETPAEKPAETPAETPAETPA 407
Cdd:PRK11901 183 PSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVP--PATSGKPKSGAASARALSSAPA 243
|
|
| rplD |
PRK14907 |
50S ribosomal protein L4; Provisional |
317-405 |
8.57e-03 |
|
50S ribosomal protein L4; Provisional
Pssm-ID: 184900 [Multi-domain] Cd Length: 295 Bit Score: 38.01 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 317 KPAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETPAETPAEKPAEKPAEKPAEKpAETPAETPAEKPAETPAEKPAE 396
Cdd:PRK14907 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTK-KVTVKFEKTESVKKESVAKKTV 83
|
....*....
gi 52550759 397 TPAETPAET 405
Cdd:PRK14907 84 KKEAVSAEV 92
|
|
| PHA01929 |
PHA01929 |
putative scaffolding protein |
318-414 |
9.11e-03 |
|
putative scaffolding protein
Pssm-ID: 177328 Cd Length: 306 Bit Score: 38.11 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 318 PAEKPAETPAEAPAETPAETPAEKPAEKPAEKPAETP--AETPAEKPAEKPAEKPAEKPAETPAETPAEKPAETPAEKPA 395
Cdd:PHA01929 25 PTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPtsAMTPHVVQQAPAQPAPAAPPAAGAALPEALEVPPPPAFTPN 104
|
90
....*....|....*....
gi 52550759 396 ETPAETPAETPAEKPASRP 414
Cdd:PHA01929 105 GEIVGTLAGNLEGDPQLAP 123
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
319-408 |
9.30e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 38.77 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPAEAPAETPAETPAEKPAEKPAeKPAETPAETPAEKPAEKPAEKPAEKPAETPAETPAEKPAetPAEKPAETP 398
Cdd:PHA03247 244 ISHPLRGDIAAPAPPPVVGEGADRAPETA-RGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPA--PPDPPPPAP 320
|
90
....*....|
gi 52550759 399 AETPAETPAE 408
Cdd:PHA03247 321 AGDAEEEDDE 330
|
|
| PRK13808 |
PRK13808 |
adenylate kinase; Provisional |
319-422 |
9.60e-03 |
|
adenylate kinase; Provisional
Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 37.94 E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 319 AEKPAETPA--EAPAETPAETPAEKPAEKPAEKPAETPAETPaeKPAEKPAEKPAEKPAETPAETPAE-KPAETPAEKPA 395
Cdd:PRK13808 219 AKSAAKKVSkkKAAKTAVSAKKAAKTAAKAAKKAKKTAKKAL--KKAAKAVKKAAKKAAKAAAKAAKGaAKATKGKAKAK 296
|
90 100
....*....|....*....|....*..
gi 52550759 396 ETPAETPAETPAEKPASRPCYGGRKGE 422
Cdd:PRK13808 297 KKAGKKAAAGSKAKATAKAPKRGAKGK 323
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
232-373 |
9.80e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 38.21 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52550759 232 PTIPEQPVAEEPSDVTVTAPEECEEEiviNPEEENKPDSSSSSSSSSSSSSESDSDEEDREPVVEEPIVEEPVVEEPVVE 311
Cdd:NF040712 192 FGRPLRPLATVPRLAREPADARPEEV---EPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52550759 312 EPVVEKPAEKPAETPAEAPAETPAETPAekPAEKPAEKPAETPAETPAeKPAEKPAEKPAEK 373
Cdd:NF040712 269 EPDEATRDAGEPPAPGAAETPEAAEPPA--PAPAAPAAPAAPEAEEPA-RPEPPPAPKPKRR 327
|
|
| |
