NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|521996543|ref|WP_020507814|]
View 

YbcC family protein [Lamprocystis purpurea]

Protein Classification

YbcC family protein( domain architecture ID 10006840)

YbcC family protein is a DUF2309 domain-containing protein similar to Bacillus subtilis UPF0753 protein YbcC

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
MpsB COG3002
Na+-translocating membrane potential-generating system subunit MpsB, UPF0753/DUF2309 family ...
36-852 0e+00

Na+-translocating membrane potential-generating system subunit MpsB, UPF0753/DUF2309 family [Energy production and conversion];


:

Pssm-ID: 442240  Cd Length: 819  Bit Score: 1159.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  36 ELDRRIDAACERIAPLWPLKHFVAVNPFFGLRDLSFQDASDALARITGTGLYMSRGYYRDQLASGRIGRDDLKAAIARCG 115
Cdd:COG3002   10 DLREALEEACHRIPPQWPLDDFVAVNPLHGLQDLPFAQAAARLARLFGARVTLPRAEYREAYASGRITDADLEAALAEAG 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 116 SRLDADTVERTLSMPAPQPRLGMAPVSEVLERVEGGLWSSFVAERISLHCAAHFDLGQALVAMPWRHLPLYASWRKAAGI 195
Cdd:COG3002   90 GALSLEELKAALLQPPPAPPPALPLLRDLLKRLTGIDWDQLVHPQISRWCAAYFDQGQALWQPPGRGKGLYAAWRELATH 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 196 DRSPAMMGLRGFRRAVARLPAEPRGAIALAIERLGIPDAAVERYLHASLMSVGGWAAWARYLRWQAELVGNRDDAIVDLL 275
Cdd:COG3002  170 DLTPLLMGLRGLRARVAALPEDAEAAIAWALERLGLPEAAWEDYLHALLLSLGGWAGWARYLEWQAELAGRRDITLRDLL 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 276 AIRLVWDMLLFEEKRSpALVARWQEMLAASMRPPSAkRQASAEIDRILLGALEIGFQRSVIAGLAT-SAPDRPAARPALQ 354
Cdd:COG3002  250 AIRLAWEAALLDEKRG-ALEAAWRAALAAQAAPAVE-ATEALEVDEIWQEALERAYQRELLAGLAAaPTPAPPAERPAVQ 327
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 355 AAFCIDVRSEVFRRALETVAPGVQTIGFAGFFGIFIEHLPLGSAVARSHVPVIFNPSYRICERVKagDREGVQAQRRLRI 434
Cdd:COG3002  328 AAFCIDVRSEVFRRALEAVDPGIETLGFAGFFGVPIAYRPLGSDAARPQCPVLLAPKYLVKEVPL--EAAAADRARRRRL 405
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 435 GLFKAWKGFKLSAASCFSFVESAGLLYGPKLVTDSFGWSRPVPDPHGQGLDPEIMERTGPTLeavppEHCSTGHGASGIP 514
Cdd:COG3002  406 RAARAWKRFKRSAVSGFSFVETLGLLYAGKLLGDSLGPSRPVALPDAFGLMAKERPRTRPRL-----ENEDENGLQIGFT 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 515 RAERLDHAERILRAMSMTADFAPLVLLAGHGSTTVNNPHATGLDCGACAGQTGEASARVVAALLNDQAVRRGLAERGIAI 594
Cdd:COG3002  481 LDERAALAEGVLRAMGLTRGFAPLVLLVGHGSSSVNNPHAAALDCGACGGQTGEVNARVLAALLNDPEVRAGLAERGIDI 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 595 PEDTWFLAGLHDTTTDLLSLFDTDEVPAALAPDLARLRQWLEQAGDLTRMERAALLGIGGL-PDRAVEAEVRRRSRDWSH 673
Cdd:COG3002  561 PEDTVFVAALHDTTTDEITLFDLDLLPASHRADLARLQRWLAQAGDLARRERARRLGLAPTkSPEALLADVRRRARDWAE 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 674 VRQEWALANNAAFIAAPRTRTAGLDLGGRAFLHEYVWQKDDGFKILELIMTAPMVVANWINLQYYGSVVDNRRFGSGNKV 753
Cdd:COG3002  641 VRPEWGLAGNAAFIVAPRSRTRGLFLDGRAFLHSYDWRQDPDGAVLELILTAPMVVAHWINLQYYFSTVDNERFGSGNKL 720
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 754 LHNVVGGaIGVLEGNSGELRVGLPLQSLHDGRRWVHEPVRLSVFIEAPETAIDAIIARHELVRQLVDHGWLHLLRIGEDD 833
Cdd:COG3002  721 LHNVVGL-IGVFEGNGGDLRTGLPWQSVHDGERWVHEPLRLLVVIEAPPEAIDAVIARHPAVRELVDNGWLHLFALDPEG 799
                        810       820
                 ....*....|....*....|
gi 521996543 834 AVHQR-RPGGEWERCAAAPA 852
Cdd:COG3002  800 REFRRyRGGGGWEPYEPDEE 819
 
Name Accession Description Interval E-value
MpsB COG3002
Na+-translocating membrane potential-generating system subunit MpsB, UPF0753/DUF2309 family ...
36-852 0e+00

Na+-translocating membrane potential-generating system subunit MpsB, UPF0753/DUF2309 family [Energy production and conversion];


Pssm-ID: 442240  Cd Length: 819  Bit Score: 1159.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  36 ELDRRIDAACERIAPLWPLKHFVAVNPFFGLRDLSFQDASDALARITGTGLYMSRGYYRDQLASGRIGRDDLKAAIARCG 115
Cdd:COG3002   10 DLREALEEACHRIPPQWPLDDFVAVNPLHGLQDLPFAQAAARLARLFGARVTLPRAEYREAYASGRITDADLEAALAEAG 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 116 SRLDADTVERTLSMPAPQPRLGMAPVSEVLERVEGGLWSSFVAERISLHCAAHFDLGQALVAMPWRHLPLYASWRKAAGI 195
Cdd:COG3002   90 GALSLEELKAALLQPPPAPPPALPLLRDLLKRLTGIDWDQLVHPQISRWCAAYFDQGQALWQPPGRGKGLYAAWRELATH 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 196 DRSPAMMGLRGFRRAVARLPAEPRGAIALAIERLGIPDAAVERYLHASLMSVGGWAAWARYLRWQAELVGNRDDAIVDLL 275
Cdd:COG3002  170 DLTPLLMGLRGLRARVAALPEDAEAAIAWALERLGLPEAAWEDYLHALLLSLGGWAGWARYLEWQAELAGRRDITLRDLL 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 276 AIRLVWDMLLFEEKRSpALVARWQEMLAASMRPPSAkRQASAEIDRILLGALEIGFQRSVIAGLAT-SAPDRPAARPALQ 354
Cdd:COG3002  250 AIRLAWEAALLDEKRG-ALEAAWRAALAAQAAPAVE-ATEALEVDEIWQEALERAYQRELLAGLAAaPTPAPPAERPAVQ 327
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 355 AAFCIDVRSEVFRRALETVAPGVQTIGFAGFFGIFIEHLPLGSAVARSHVPVIFNPSYRICERVKagDREGVQAQRRLRI 434
Cdd:COG3002  328 AAFCIDVRSEVFRRALEAVDPGIETLGFAGFFGVPIAYRPLGSDAARPQCPVLLAPKYLVKEVPL--EAAAADRARRRRL 405
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 435 GLFKAWKGFKLSAASCFSFVESAGLLYGPKLVTDSFGWSRPVPDPHGQGLDPEIMERTGPTLeavppEHCSTGHGASGIP 514
Cdd:COG3002  406 RAARAWKRFKRSAVSGFSFVETLGLLYAGKLLGDSLGPSRPVALPDAFGLMAKERPRTRPRL-----ENEDENGLQIGFT 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 515 RAERLDHAERILRAMSMTADFAPLVLLAGHGSTTVNNPHATGLDCGACAGQTGEASARVVAALLNDQAVRRGLAERGIAI 594
Cdd:COG3002  481 LDERAALAEGVLRAMGLTRGFAPLVLLVGHGSSSVNNPHAAALDCGACGGQTGEVNARVLAALLNDPEVRAGLAERGIDI 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 595 PEDTWFLAGLHDTTTDLLSLFDTDEVPAALAPDLARLRQWLEQAGDLTRMERAALLGIGGL-PDRAVEAEVRRRSRDWSH 673
Cdd:COG3002  561 PEDTVFVAALHDTTTDEITLFDLDLLPASHRADLARLQRWLAQAGDLARRERARRLGLAPTkSPEALLADVRRRARDWAE 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 674 VRQEWALANNAAFIAAPRTRTAGLDLGGRAFLHEYVWQKDDGFKILELIMTAPMVVANWINLQYYGSVVDNRRFGSGNKV 753
Cdd:COG3002  641 VRPEWGLAGNAAFIVAPRSRTRGLFLDGRAFLHSYDWRQDPDGAVLELILTAPMVVAHWINLQYYFSTVDNERFGSGNKL 720
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 754 LHNVVGGaIGVLEGNSGELRVGLPLQSLHDGRRWVHEPVRLSVFIEAPETAIDAIIARHELVRQLVDHGWLHLLRIGEDD 833
Cdd:COG3002  721 LHNVVGL-IGVFEGNGGDLRTGLPWQSVHDGERWVHEPLRLLVVIEAPPEAIDAVIARHPAVRELVDNGWLHLFALDPEG 799
                        810       820
                 ....*....|....*....|
gi 521996543 834 AVHQR-RPGGEWERCAAAPA 852
Cdd:COG3002  800 REFRRyRGGGGWEPYEPDEE 819
DabA pfam10070
Probable inorganic carbon transporter subunit DabA; This entry represents the probable ...
43-823 0e+00

Probable inorganic carbon transporter subunit DabA; This entry represents the probable inorganic carbon transporter subunit DabA, which is part of an energy-coupled inorganic carbon pump together with DabB subunit in DAB operons (DAB1 and DAB2), found in a wide range of bacteria and archaea. Members of this family were previously known as UPF0753. DAB operon is required for CO2 concentrating mechanisms. The substrate of this subunit may be CO2 rather than carbonate ions based on kinetic calculations and in experimental assays in which E.coli was deleted of its carbonic anhydrase genes and expression of DAB2 operon restores its growth. Structural homology modelling suggests that DabA contains a domain that is distantly homologous to a type II beta-carbonic anhydrase (CA).


Pssm-ID: 431030  Cd Length: 759  Bit Score: 1028.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543   43 AACERIAPLWPLKHFVAVNPFFGLRDLSFQDASDALARITGTGLYMSRGYYRDQLASGRIGRDDLKAAiarcgsrldadt 122
Cdd:pfam10070   1 EAAHAIPPQWPLDSFVAVNPLHGLEDLPFEEAAARLARLFGARGYLPRAYYREALARGRIDPADLEAA------------ 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  123 verTLSMPAPQPRLGMAPVSEVLERVEGGLWSSFVAERISLHCAAHFDLGQALVAMPWRHLPLYASWRKAAGIDRSPAMM 202
Cdd:pfam10070  69 ---AGSLALEAALGRLPTLADLLDALTGEDWDDLVDPQLIRWCAAFLDEGQAAWPMPGREQGLYAAWRELARHDRGPPLM 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  203 GLRGFRRAVARLPAEPRGAIALAIERLGIPDAAVERYLHASLMSVGGWAAWARYLRWQ-AELVGNRDDAIVDLLAIRLVW 281
Cdd:pfam10070 146 GLAGLRRRLAALPEDPEEAIAWALERLGIPEAAWEDYLEALLLALPGWAGMIRYREWQpAELQGAYPASLVDLLAIRLAL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  282 DMLLFEEK-RSPALVARWQEMLAASMRPPSAKRQASAEIDRILLGALEIGFQRSVIAGLATSAP-DRPAARPALQAAFCI 359
Cdd:pfam10070 226 EAALLAAVlRRNWGPPGSLPALEAAFEAAAADEFASAERGRLWLEAWERSYQRQLLAALAANSRaAAAATRPAAQAVFCI 305
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  360 DVRSEVFRRALETVAPGVQTIGFAGFFGIFIEHLPLGSAVARSHVPVIFNPSYRICERVKAGDREGVQAQ-RRLRIGLFK 438
Cdd:pfam10070 306 DVRSESFRRHLEAVGPGYETFGFAGFFGVPIAYQGLGDDHARPLCPVLLTPAHRVREEPRDAAEAARARRrRRLRAAARR 385
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  439 AWKGFKLSAASCFSFVESAGLLYGPKLVTDSFGWSRPVPDPHGQGLDPEIMERTGPTLEAVPPEhcstghgasGIPRAER 518
Cdd:pfam10070 386 AWKRLKRSALSSFSFVEALGLLYGLKLLGRTLAPRRAARLPDRLGLRVLPKPATRLTLDRLSDE---------GFTLEEQ 456
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  519 LDHAERILRAMSMTADFAPLVLLAGHGSTTVNNPHATGLDCGACAGQTGEASARVVAALLNDQAVRRGLAERGIAIPEDT 598
Cdd:pfam10070 457 VELAEGALRAMGLTRNFAPLVVLVGHGSTSVNNPHASALDCGACGGQSGGPNARVLAALLNDPEVRAGLAERGIDIPEDT 536
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  599 WFLAGLHDTTTDLLSLFDTDEVPAALAPDLARLRQWLEQAGDLTRMERAALLGIGGLPDRAVeAEVRRRSRDWSHVRQEW 678
Cdd:pfam10070 537 VFVAALHNTTTDEVTLFDLDLLPASHRADLERLRADLAEAGRLAAAERARRLPSAPRDAAAL-AHVRRRARDWSEVRPEW 615
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  679 ALANNAAFIAAPRTRTAGLDLGGRAFLHEYVWQKDDGFKILELIMTAPMVVANWINLQYYGSVVDNRRFGSGNKVLHNVV 758
Cdd:pfam10070 616 GLAGNAAFIIGPRSLTRGLDLDGRAFLHSYDWRQDPDGAVLELILTAPMVVAQWINLQYYFSTVDNEVYGSGSKVLHNVV 695
                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 521996543  759 GGaIGVLEGNSGELRVGLPLQSLHDGRRWVHEPVRLSVFIEAPETAIDAIIARHELVRQLVDHGW 823
Cdd:pfam10070 696 GL-IGVMEGNGGDLRTGLPWQSVHDGDREYHEPLRLLVVIEAPREAIERILARHPAVRELVDNGW 759
 
Name Accession Description Interval E-value
MpsB COG3002
Na+-translocating membrane potential-generating system subunit MpsB, UPF0753/DUF2309 family ...
36-852 0e+00

Na+-translocating membrane potential-generating system subunit MpsB, UPF0753/DUF2309 family [Energy production and conversion];


Pssm-ID: 442240  Cd Length: 819  Bit Score: 1159.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  36 ELDRRIDAACERIAPLWPLKHFVAVNPFFGLRDLSFQDASDALARITGTGLYMSRGYYRDQLASGRIGRDDLKAAIARCG 115
Cdd:COG3002   10 DLREALEEACHRIPPQWPLDDFVAVNPLHGLQDLPFAQAAARLARLFGARVTLPRAEYREAYASGRITDADLEAALAEAG 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 116 SRLDADTVERTLSMPAPQPRLGMAPVSEVLERVEGGLWSSFVAERISLHCAAHFDLGQALVAMPWRHLPLYASWRKAAGI 195
Cdd:COG3002   90 GALSLEELKAALLQPPPAPPPALPLLRDLLKRLTGIDWDQLVHPQISRWCAAYFDQGQALWQPPGRGKGLYAAWRELATH 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 196 DRSPAMMGLRGFRRAVARLPAEPRGAIALAIERLGIPDAAVERYLHASLMSVGGWAAWARYLRWQAELVGNRDDAIVDLL 275
Cdd:COG3002  170 DLTPLLMGLRGLRARVAALPEDAEAAIAWALERLGLPEAAWEDYLHALLLSLGGWAGWARYLEWQAELAGRRDITLRDLL 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 276 AIRLVWDMLLFEEKRSpALVARWQEMLAASMRPPSAkRQASAEIDRILLGALEIGFQRSVIAGLAT-SAPDRPAARPALQ 354
Cdd:COG3002  250 AIRLAWEAALLDEKRG-ALEAAWRAALAAQAAPAVE-ATEALEVDEIWQEALERAYQRELLAGLAAaPTPAPPAERPAVQ 327
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 355 AAFCIDVRSEVFRRALETVAPGVQTIGFAGFFGIFIEHLPLGSAVARSHVPVIFNPSYRICERVKagDREGVQAQRRLRI 434
Cdd:COG3002  328 AAFCIDVRSEVFRRALEAVDPGIETLGFAGFFGVPIAYRPLGSDAARPQCPVLLAPKYLVKEVPL--EAAAADRARRRRL 405
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 435 GLFKAWKGFKLSAASCFSFVESAGLLYGPKLVTDSFGWSRPVPDPHGQGLDPEIMERTGPTLeavppEHCSTGHGASGIP 514
Cdd:COG3002  406 RAARAWKRFKRSAVSGFSFVETLGLLYAGKLLGDSLGPSRPVALPDAFGLMAKERPRTRPRL-----ENEDENGLQIGFT 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 515 RAERLDHAERILRAMSMTADFAPLVLLAGHGSTTVNNPHATGLDCGACAGQTGEASARVVAALLNDQAVRRGLAERGIAI 594
Cdd:COG3002  481 LDERAALAEGVLRAMGLTRGFAPLVLLVGHGSSSVNNPHAAALDCGACGGQTGEVNARVLAALLNDPEVRAGLAERGIDI 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 595 PEDTWFLAGLHDTTTDLLSLFDTDEVPAALAPDLARLRQWLEQAGDLTRMERAALLGIGGL-PDRAVEAEVRRRSRDWSH 673
Cdd:COG3002  561 PEDTVFVAALHDTTTDEITLFDLDLLPASHRADLARLQRWLAQAGDLARRERARRLGLAPTkSPEALLADVRRRARDWAE 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 674 VRQEWALANNAAFIAAPRTRTAGLDLGGRAFLHEYVWQKDDGFKILELIMTAPMVVANWINLQYYGSVVDNRRFGSGNKV 753
Cdd:COG3002  641 VRPEWGLAGNAAFIVAPRSRTRGLFLDGRAFLHSYDWRQDPDGAVLELILTAPMVVAHWINLQYYFSTVDNERFGSGNKL 720
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543 754 LHNVVGGaIGVLEGNSGELRVGLPLQSLHDGRRWVHEPVRLSVFIEAPETAIDAIIARHELVRQLVDHGWLHLLRIGEDD 833
Cdd:COG3002  721 LHNVVGL-IGVFEGNGGDLRTGLPWQSVHDGERWVHEPLRLLVVIEAPPEAIDAVIARHPAVRELVDNGWLHLFALDPEG 799
                        810       820
                 ....*....|....*....|
gi 521996543 834 AVHQR-RPGGEWERCAAAPA 852
Cdd:COG3002  800 REFRRyRGGGGWEPYEPDEE 819
DabA pfam10070
Probable inorganic carbon transporter subunit DabA; This entry represents the probable ...
43-823 0e+00

Probable inorganic carbon transporter subunit DabA; This entry represents the probable inorganic carbon transporter subunit DabA, which is part of an energy-coupled inorganic carbon pump together with DabB subunit in DAB operons (DAB1 and DAB2), found in a wide range of bacteria and archaea. Members of this family were previously known as UPF0753. DAB operon is required for CO2 concentrating mechanisms. The substrate of this subunit may be CO2 rather than carbonate ions based on kinetic calculations and in experimental assays in which E.coli was deleted of its carbonic anhydrase genes and expression of DAB2 operon restores its growth. Structural homology modelling suggests that DabA contains a domain that is distantly homologous to a type II beta-carbonic anhydrase (CA).


Pssm-ID: 431030  Cd Length: 759  Bit Score: 1028.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543   43 AACERIAPLWPLKHFVAVNPFFGLRDLSFQDASDALARITGTGLYMSRGYYRDQLASGRIGRDDLKAAiarcgsrldadt 122
Cdd:pfam10070   1 EAAHAIPPQWPLDSFVAVNPLHGLEDLPFEEAAARLARLFGARGYLPRAYYREALARGRIDPADLEAA------------ 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  123 verTLSMPAPQPRLGMAPVSEVLERVEGGLWSSFVAERISLHCAAHFDLGQALVAMPWRHLPLYASWRKAAGIDRSPAMM 202
Cdd:pfam10070  69 ---AGSLALEAALGRLPTLADLLDALTGEDWDDLVDPQLIRWCAAFLDEGQAAWPMPGREQGLYAAWRELARHDRGPPLM 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  203 GLRGFRRAVARLPAEPRGAIALAIERLGIPDAAVERYLHASLMSVGGWAAWARYLRWQ-AELVGNRDDAIVDLLAIRLVW 281
Cdd:pfam10070 146 GLAGLRRRLAALPEDPEEAIAWALERLGIPEAAWEDYLEALLLALPGWAGMIRYREWQpAELQGAYPASLVDLLAIRLAL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  282 DMLLFEEK-RSPALVARWQEMLAASMRPPSAKRQASAEIDRILLGALEIGFQRSVIAGLATSAP-DRPAARPALQAAFCI 359
Cdd:pfam10070 226 EAALLAAVlRRNWGPPGSLPALEAAFEAAAADEFASAERGRLWLEAWERSYQRQLLAALAANSRaAAAATRPAAQAVFCI 305
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  360 DVRSEVFRRALETVAPGVQTIGFAGFFGIFIEHLPLGSAVARSHVPVIFNPSYRICERVKAGDREGVQAQ-RRLRIGLFK 438
Cdd:pfam10070 306 DVRSESFRRHLEAVGPGYETFGFAGFFGVPIAYQGLGDDHARPLCPVLLTPAHRVREEPRDAAEAARARRrRRLRAAARR 385
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  439 AWKGFKLSAASCFSFVESAGLLYGPKLVTDSFGWSRPVPDPHGQGLDPEIMERTGPTLEAVPPEhcstghgasGIPRAER 518
Cdd:pfam10070 386 AWKRLKRSALSSFSFVEALGLLYGLKLLGRTLAPRRAARLPDRLGLRVLPKPATRLTLDRLSDE---------GFTLEEQ 456
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  519 LDHAERILRAMSMTADFAPLVLLAGHGSTTVNNPHATGLDCGACAGQTGEASARVVAALLNDQAVRRGLAERGIAIPEDT 598
Cdd:pfam10070 457 VELAEGALRAMGLTRNFAPLVVLVGHGSTSVNNPHASALDCGACGGQSGGPNARVLAALLNDPEVRAGLAERGIDIPEDT 536
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  599 WFLAGLHDTTTDLLSLFDTDEVPAALAPDLARLRQWLEQAGDLTRMERAALLGIGGLPDRAVeAEVRRRSRDWSHVRQEW 678
Cdd:pfam10070 537 VFVAALHNTTTDEVTLFDLDLLPASHRADLERLRADLAEAGRLAAAERARRLPSAPRDAAAL-AHVRRRARDWSEVRPEW 615
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  679 ALANNAAFIAAPRTRTAGLDLGGRAFLHEYVWQKDDGFKILELIMTAPMVVANWINLQYYGSVVDNRRFGSGNKVLHNVV 758
Cdd:pfam10070 616 GLAGNAAFIIGPRSLTRGLDLDGRAFLHSYDWRQDPDGAVLELILTAPMVVAQWINLQYYFSTVDNEVYGSGSKVLHNVV 695
                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 521996543  759 GGaIGVLEGNSGELRVGLPLQSLHDGRRWVHEPVRLSVFIEAPETAIDAIIARHELVRQLVDHGW 823
Cdd:pfam10070 696 GL-IGVMEGNGGDLRTGLPWQSVHDGDREYHEPLRLLVVIEAPREAIERILARHPAVRELVDNGW 759
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
182-703 8.16e-05

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 46.40  E-value: 8.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  182 HLPLYASWRK-AAGIDRSPAMMGLRGFRRAVARLPAEPRGAIALAIERLGIPDAAVERYLHASLMSVGGWAAWARYLRWQ 260
Cdd:COG3321   862 PLPTYPFQREdAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAA 941
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  261 AELVGNRDDAIVDLLAIRLVWDMLLFEEKRSPALVARWQEMLAASMRPPSAKRQASAEIDRILLGALEIGFQRSVIAGLA 340
Cdd:COG3321   942 LLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAAAAAL 1021
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  341 TSAPDRPAARPALQAAFCIDVRSEVFRRALETVAPGVQTIGFAGFFGIFIEHLPLGSAVARSHVPVIFNPSYRICERVKA 420
Cdd:COG3321  1022 LALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAA 1101
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  421 GDREGVQAQRRLRIGLFKAWKGFKLSAASCFSFVESAGLLYGPKLVTDSFGWSRPVPDPHGQGLDPEIMERTGPTLEAVP 500
Cdd:COG3321  1102 LAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALAL 1181
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  501 PEHCSTGHGASGIPRAERLDHAERILRAMSMTADFAPLVLLAGHGSTTVNNPHATGLDCGACAGQTGEASARVVAALLND 580
Cdd:COG3321  1182 AAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAA 1261
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521996543  581 QAVRRGLAERGIAIPEDTWFLAGLHDTTTDLLSLFDTDEVPAALAPDLARLRQWLEQAGDLTRMERAALLGIGGLPDRAV 660
Cdd:COG3321  1262 LALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAALAAAVAAAL 1341
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|...
gi 521996543  661 EAEVRRRSRDWSHVRQEWALANNAAFIAAPRTRTAGLDLGGRA 703
Cdd:COG3321  1342 ALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAALALAALAAA 1384
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH