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Conserved domains on  [gi|518554964|ref|WP_019725171|]
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MULTISPECIES: IS1 family transposase, partial [Pseudomonadota]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_IS1 super family cl44371
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-35 2.35e-16

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


The actual alignment was detected with superfamily member pfam03400:

Pssm-ID: 281403  Cd Length: 131  Bit Score: 65.76  E-value: 2.35e-16
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 518554964    1 RQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ 35
Cdd:pfam03400  97 RQHIARLARKSICFSKSVEIHDKVIGHFIEIHHFQ 131
 
Name Accession Description Interval E-value
DDE_Tnp_IS1 pfam03400
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-35 2.35e-16

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


Pssm-ID: 281403  Cd Length: 131  Bit Score: 65.76  E-value: 2.35e-16
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 518554964    1 RQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ 35
Cdd:pfam03400  97 RQHIARLARKSICFSKSVEIHDKVIGHFIEIHHFQ 131
InsB COG1662
Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];
1-35 6.06e-10

Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];


Pssm-ID: 441268 [Multi-domain]  Cd Length: 193  Bit Score: 50.47  E-value: 6.06e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 518554964   1 RQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ 35
Cdd:COG1662  156 RHRLKRLVRKTICFSKSLEMHDKAIKLFFHYYNFG 190
 
Name Accession Description Interval E-value
DDE_Tnp_IS1 pfam03400
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-35 2.35e-16

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


Pssm-ID: 281403  Cd Length: 131  Bit Score: 65.76  E-value: 2.35e-16
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 518554964    1 RQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ 35
Cdd:pfam03400  97 RQHIARLARKSICFSKSVEIHDKVIGHFIEIHHFQ 131
InsB COG1662
Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];
1-35 6.06e-10

Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];


Pssm-ID: 441268 [Multi-domain]  Cd Length: 193  Bit Score: 50.47  E-value: 6.06e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 518554964   1 RQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ 35
Cdd:COG1662  156 RHRLKRLVRKTICFSKSLEMHDKAIKLFFHYYNFG 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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