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Conserved domains on  [gi|518554855|ref|WP_019725062|]
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MULTISPECIES: IS1 family transposase, partial [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_IS1 super family cl44371
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-28 2.60e-12

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


The actual alignment was detected with superfamily member pfam03400:

Pssm-ID: 281403  Cd Length: 131  Bit Score: 55.36  E-value: 2.60e-12
                          10        20
                  ....*....|....*....|....*...
gi 518554855    1 GRKSLSFSKSVELHDKVIGHYLNIKHYQ 28
Cdd:pfam03400 104 ARKSICFSKSVEIHDKVIGHFIEIHHFQ 131
 
Name Accession Description Interval E-value
DDE_Tnp_IS1 pfam03400
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-28 2.60e-12

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


Pssm-ID: 281403  Cd Length: 131  Bit Score: 55.36  E-value: 2.60e-12
                          10        20
                  ....*....|....*....|....*...
gi 518554855    1 GRKSLSFSKSVELHDKVIGHYLNIKHYQ 28
Cdd:pfam03400 104 ARKSICFSKSVEIHDKVIGHFIEIHHFQ 131
InsB COG1662
Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];
2-28 1.17e-05

Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];


Pssm-ID: 441268 [Multi-domain]  Cd Length: 193  Bit Score: 38.53  E-value: 1.17e-05
                         10        20
                 ....*....|....*....|....*..
gi 518554855   2 RKSLSFSKSVELHDKVIGHYLNIKHYQ 28
Cdd:COG1662  164 RKTICFSKSLEMHDKAIKLFFHYYNFG 190
 
Name Accession Description Interval E-value
DDE_Tnp_IS1 pfam03400
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-28 2.60e-12

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


Pssm-ID: 281403  Cd Length: 131  Bit Score: 55.36  E-value: 2.60e-12
                          10        20
                  ....*....|....*....|....*...
gi 518554855    1 GRKSLSFSKSVELHDKVIGHYLNIKHYQ 28
Cdd:pfam03400 104 ARKSICFSKSVEIHDKVIGHFIEIHHFQ 131
InsB COG1662
Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];
2-28 1.17e-05

Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];


Pssm-ID: 441268 [Multi-domain]  Cd Length: 193  Bit Score: 38.53  E-value: 1.17e-05
                         10        20
                 ....*....|....*....|....*..
gi 518554855   2 RKSLSFSKSVELHDKVIGHYLNIKHYQ 28
Cdd:COG1662  164 RKTICFSKSLEMHDKAIKLFFHYYNFG 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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