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Conserved domains on  [gi|51572411|gb|AAU07698|]
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cytochrome b, partial (mitochondrion) [Miniopterus schreibersii orianae]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-175 2.61e-137

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 387.46  E-value: 2.61e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00100   6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00100  86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00100 166 GGFSVDKATLTRFFA 180
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-175 2.61e-137

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 387.46  E-value: 2.61e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00100   6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00100  86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00100 166 GGFSVDKATLTRFFA 180
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-175 1.10e-83

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 244.97  E-value: 1.10e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   4 PLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGAS 83
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411  84 MFFICLYLHVGRGLYYGSY--TLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWG 161
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170
                ....*....|....
gi 51572411 162 GFSVDKATLTRFFA 175
Cdd:cd00284 161 GFSVDNATLTRFFA 174
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-175 7.18e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 224.95  E-value: 7.18e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    13 LVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGASMFFICLYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    93 VGRGLYYG--SYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATL 170
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160


                  ....*
gi 51572411   171 TRFFA 175
Cdd:pfam00033 161 TRFFS 165
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-175 9.53e-74

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 226.21  E-value: 9.53e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   4 PLIKIINSSLvDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGAS 83
Cdd:COG1290  19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411  84 MFFICLYLHVGRGLYYGSYT----LteTWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWI 159
Cdd:COG1290  98 LFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                       170
                ....*....|....*.
gi 51572411 160 WGGFSVDKATLTRFFA 175
Cdd:COG1290 176 FGGEFPGDATLNRFFA 191
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-175 2.61e-137

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 387.46  E-value: 2.61e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00100   6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00100  86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00100 166 GGFSVDKATLTRFFA 180
CYTB MTH00156
cytochrome b; Provisional
 6-175 2.41e-125

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 356.40  E-value: 2.41e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    6 IKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGASMF 85
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   86 FICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSV 165
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170
                 ....*....|
gi 51572411  166 DKATLTRFFA 175
Cdd:MTH00156 161 DNATLTRFFT 170
CYTB MTH00119
cytochrome b; Provisional
 1-175 3.59e-125

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 356.90  E-value: 3.59e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00119   7 KSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHAN 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00119  87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00119 167 GGFSVDNPTLTRFFA 181
CYTB MTH00074
cytochrome b; Provisional
 1-175 7.22e-124

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 353.60  E-value: 7.22e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00074   7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00074  87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIW 166

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00074 167 GGFSVDKATLTRFFA 181
CYTB MTH00131
cytochrome b; Provisional
 1-175 3.53e-122

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 349.34  E-value: 3.53e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00131   6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00131  86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00131 166 GGFSVDNATLTRFFA 180
CYTB MTH00191
cytochrome b; Provisional
 1-175 1.34e-120

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 344.59  E-value: 1.34e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00191   3 KTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHAN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00191  83 GASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLW 162

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00191 163 GGFSVDNATLTRFFT 177
CYTB MTH00145
cytochrome b; Provisional
 1-175 6.78e-116

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 333.41  E-value: 6.78e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00145   7 KSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHAN 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00145  87 GASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVW 166

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00145 167 GGFSVGNATLKRFFS 181
CYTB MTH00034
cytochrome b; Validated
 1-175 1.20e-113

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 327.43  E-value: 1.20e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00034   6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00034  86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIW 165

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00034 166 GGFSVDNATLTRFFA 180
CYTB MTH00016
cytochrome b; Validated
 1-175 4.98e-111

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 320.86  E-value: 4.98e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00016   7 KTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHAN 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00016  87 GASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLW 166

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00016 167 GGFSVDNATLTRFFA 181
CYTB MTH00022
cytochrome b; Validated
 1-175 3.16e-99

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 290.83  E-value: 3.16e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00022   5 KENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHAN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00022  85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVW 164

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00022 165 GGFSVSNATLNRFFS 179
CYTB MTH00224
cytochrome b; Provisional
 2-175 1.12e-96

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 284.51  E-value: 1.12e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    2 SHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANG 81
Cdd:MTH00224   8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   82 ASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWG 161
Cdd:MTH00224  88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                        170
                 ....*....|....
gi 51572411  162 GFSVDKATLTRFFA 175
Cdd:MTH00224 168 GFAVDNATLNRFFS 181
CYTB MTH00053
cytochrome b; Provisional
 1-175 1.39e-91

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 271.58  E-value: 1.39e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    1 KSHPLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHAN 80
Cdd:MTH00053   7 KENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHAN 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   81 GASMFFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:MTH00053  87 GASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVW 166

                        170
                 ....*....|....*
gi 51572411  161 GGFSVDKATLTRFFA 175
Cdd:MTH00053 167 GGFSVSNATLNRFYS 181
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-175 1.10e-83

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 244.97  E-value: 1.10e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   4 PLIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGAS 83
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411  84 MFFICLYLHVGRGLYYGSY--TLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWG 161
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170
                ....*....|....
gi 51572411 162 GFSVDKATLTRFFA 175
Cdd:cd00284 161 GFSVDNATLTRFFA 174
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-175 7.18e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 224.95  E-value: 7.18e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    13 LVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGASMFFICLYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    93 VGRGLYYG--SYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATL 170
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160


                  ....*
gi 51572411   171 TRFFA 175
Cdd:pfam00033 161 TRFFS 165
CYTB MTH00033
cytochrome b; Provisional
 11-175 5.19e-75

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 229.44  E-value: 5.19e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   11 SSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGASMFFICLY 90
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   91 LHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATL 170
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172


                 ....*
gi 51572411  171 TRFFA 175
Cdd:MTH00033 173 NRFFS 177
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-175 9.53e-74

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 226.21  E-value: 9.53e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   4 PLIKIINSSLvDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGAS 83
Cdd:COG1290  19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411  84 MFFICLYLHVGRGLYYGSYT----LteTWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWI 159
Cdd:COG1290  98 LFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                       170
                ....*....|....*.
gi 51572411 160 WGGFSVDKATLTRFFA 175
Cdd:COG1290 176 FGGEFPGDATLNRFFA 191
CYTB MTH00086
cytochrome b; Provisional
 7-174 2.33e-70

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 216.73  E-value: 2.33e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    7 KIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGASMFF 86
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   87 ICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVD 166
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160


                 ....*...
gi 51572411  167 KATLTRFF 174
Cdd:MTH00086 161 SATLKFFF 168
CYTB MTH00046
cytochrome b; Validated
 5-175 7.93e-46

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 153.60  E-value: 7.93e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    5 LIKIINSSLVDLPAPSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGASM 84
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   85 FFICLYLHVGRGLYYGSYTLTETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFS 164
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170
                 ....*....|.
gi 51572411  165 VDKATLTRFFA 175
Cdd:MTH00046 161 VTGVTLVRVFS 171
PRK03735 PRK03735
cytochrome b6; Provisional
 28-175 1.23e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 126.36  E-value: 1.23e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   28 FGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGASMFFICLYLHVGRGLYYGSYTLTE- 106
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411  107 -TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFA 175
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFA 193
petB CHL00070
cytochrome b6
 19-175 9.46e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 103.26  E-value: 9.46e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411   19 PSNISSWWNFGSLLGVCLGIQILTGLFLAMHYTADTATAFNSVTHICRDVNYGWILRYLHANGASMFFICLYLHVGRGLY 98
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 51572411   99 YGSYTLTE--TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFA 175
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
83-175 9.63e-28

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 101.93  E-value: 9.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51572411    83 SMFFICLYLHVGRGLYYGSYTLTE--TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIW 160
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90
                  ....*....|....*
gi 51572411   161 GGFSVDKATLTRFFA 175
Cdd:pfam13631  81 GGPFPGTATIPRFYA 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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