![](files/infoQ.gif)
myb-related protein P [Setaria italica]
List of domain hits
![](files/help.png)
Name | Accession | Description | Interval | E-value | |||||
P_C | pfam06640 | P protein C-terminus; This family represents the C-terminus of plant P proteins. The maize P ... |
130-364 | 1.50e-121 | |||||
P protein C-terminus; This family represents the C-terminus of plant P proteins. The maize P gene is a transcriptional regulator of genes encoding enzymes for flavonoid biosynthesis in the pathway leading to the production of a red phlobaphene pigment, and P proteins are homologous to the DNA-binding domain of myb-like transcription factors. All members of this family contain the pfam00249 domain. : Pssm-ID: 429048 Cd Length: 252 Bit Score: 351.23 E-value: 1.50e-121
|
|||||||||
PLN03091 super family | cl33633 | hypothetical protein; Provisional |
1-116 | 3.24e-58 | |||||
hypothetical protein; Provisional The actual alignment was detected with superfamily member PLN03091: Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 195.58 E-value: 3.24e-58
|
|||||||||
Name | Accession | Description | Interval | E-value | |||||
P_C | pfam06640 | P protein C-terminus; This family represents the C-terminus of plant P proteins. The maize P ... |
130-364 | 1.50e-121 | |||||
P protein C-terminus; This family represents the C-terminus of plant P proteins. The maize P gene is a transcriptional regulator of genes encoding enzymes for flavonoid biosynthesis in the pathway leading to the production of a red phlobaphene pigment, and P proteins are homologous to the DNA-binding domain of myb-like transcription factors. All members of this family contain the pfam00249 domain. Pssm-ID: 429048 Cd Length: 252 Bit Score: 351.23 E-value: 1.50e-121
|
|||||||||
PLN03091 | PLN03091 | hypothetical protein; Provisional |
1-116 | 3.24e-58 | |||||
hypothetical protein; Provisional Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 195.58 E-value: 3.24e-58
|
|||||||||
Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
67-112 | 2.92e-16 | |||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 71.77 E-value: 2.92e-16
|
|||||||||
REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
9-110 | 4.42e-16 | |||||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 79.45 E-value: 4.42e-16
|
|||||||||
SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
67-114 | 1.39e-12 | |||||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 61.47 E-value: 1.39e-12
|
|||||||||
SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
71-112 | 9.36e-12 | |||||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 59.13 E-value: 9.36e-12
|
|||||||||
Name | Accession | Description | Interval | E-value | |||||
P_C | pfam06640 | P protein C-terminus; This family represents the C-terminus of plant P proteins. The maize P ... |
130-364 | 1.50e-121 | |||||
P protein C-terminus; This family represents the C-terminus of plant P proteins. The maize P gene is a transcriptional regulator of genes encoding enzymes for flavonoid biosynthesis in the pathway leading to the production of a red phlobaphene pigment, and P proteins are homologous to the DNA-binding domain of myb-like transcription factors. All members of this family contain the pfam00249 domain. Pssm-ID: 429048 Cd Length: 252 Bit Score: 351.23 E-value: 1.50e-121
|
|||||||||
PLN03091 | PLN03091 | hypothetical protein; Provisional |
1-116 | 3.24e-58 | |||||
hypothetical protein; Provisional Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 195.58 E-value: 3.24e-58
|
|||||||||
PLN03212 | PLN03212 | Transcription repressor MYB5; Provisional |
5-147 | 6.63e-58 | |||||
Transcription repressor MYB5; Provisional Pssm-ID: 178751 [Multi-domain] Cd Length: 249 Bit Score: 188.36 E-value: 6.63e-58
|
|||||||||
Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
67-112 | 2.92e-16 | |||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 71.77 E-value: 2.92e-16
|
|||||||||
REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
9-110 | 4.42e-16 | |||||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 79.45 E-value: 4.42e-16
|
|||||||||
Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
14-61 | 6.17e-13 | |||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 62.52 E-value: 6.17e-13
|
|||||||||
SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
67-114 | 1.39e-12 | |||||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 61.47 E-value: 1.39e-12
|
|||||||||
SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
71-112 | 9.36e-12 | |||||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 59.13 E-value: 9.36e-12
|
|||||||||
SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
14-62 | 5.02e-11 | |||||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 57.23 E-value: 5.02e-11
|
|||||||||
SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
16-61 | 6.63e-11 | |||||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 56.81 E-value: 6.63e-11
|
|||||||||
Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
17-75 | 1.71e-10 | |||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 56.16 E-value: 1.71e-10
|
|||||||||
Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
71-116 | 1.50e-08 | |||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 50.77 E-value: 1.50e-08
|
|||||||||
REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
13-100 | 5.17e-05 | |||||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 45.16 E-value: 5.17e-05
|
|||||||||
SANT_TRF | cd11660 | Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ... |
16-38 | 4.50e-03 | |||||
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Pssm-ID: 212558 [Multi-domain] Cd Length: 50 Bit Score: 34.85 E-value: 4.50e-03
|
|||||||||
Blast search parameters | ||||
|