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Conserved domains on  [gi|514231252|ref|YP_008129930|]
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HNH endonuclease [Paenibacillus phage PG1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
McrA super family cl43413
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
11-71 2.82e-03

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


The actual alignment was detected with superfamily member COG1403:

Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 33.42  E-value: 2.82e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 514231252  11 SKAWKECRASYIIKVHGLCERCSKPGKI----VHHKKYLTPYNINDPnitlshSNLEYVCQDCHN 71
Cdd:COG1403    4 GREWPALRRAVLKRDNGRCQYCGRPFSGdaleVDHIIPRSRGGTDTW------ENLVLLCRRCNR 62
 
Name Accession Description Interval E-value
McrA COG1403
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
11-71 2.82e-03

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 33.42  E-value: 2.82e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 514231252  11 SKAWKECRASYIIKVHGLCERCSKPGKI----VHHKKYLTPYNINDPnitlshSNLEYVCQDCHN 71
Cdd:COG1403    4 GREWPALRRAVLKRDNGRCQYCGRPFSGdaleVDHIIPRSRGGTDTW------ENLVLLCRRCNR 62
 
Name Accession Description Interval E-value
McrA COG1403
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
11-71 2.82e-03

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 33.42  E-value: 2.82e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 514231252  11 SKAWKECRASYIIKVHGLCERCSKPGKI----VHHKKYLTPYNINDPnitlshSNLEYVCQDCHN 71
Cdd:COG1403    4 GREWPALRRAVLKRDNGRCQYCGRPFSGdaleVDHIIPRSRGGTDTW------ENLVLLCRRCNR 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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