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Conserved domains on  [gi|514088869|ref|WP_016532830|]
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surface lipoprotein assembly modifier [Pasteurella multocida]

Protein Classification

TPR_19 and SlipAM domain-containing protein( domain architecture ID 12169207)

TPR_19 and SlipAM domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SlipAM pfam04575
Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a ...
 203-506 2.29e-133

Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a surface lipoprotein that may have a role in virulence. In Neisseria, it is required for the surface display of lipidated virulence factors. Proteins in this family contain an eight-stranded beta-barrel domain.


:

Pssm-ID: 398328  Cd Length: 288  Bit Score: 387.86  E-value: 2.29e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  203 WNVYGGVNYLHENNVNNAPPKGTKA---EGFTPSSQPEKAHGLSYFINLSKNWSLAHGFFTEFSADINGKYYWDNHKYDE 279
Cdd:pfam04575   1 WKFNGGFSYIREDNINNAPDKTTYNfikSGNWTFPKPKKANGLSYDLGAEKKWPLSGGHYLEFRADTYGKSYWDNKKYND 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  280 FSTRLNLGGGYRNAKTEVKLIPFVEQFWYvggenatkdarTLHRYSKSSGINLDVDYWLTPNWKISTVLEYTEQRYiqPQ 359
Cdd:pfam04575  81 LSTRAGLGYGYKNAKTDVSVLPFYEKRFY-----------GNDRYYRAIGVRLSKNYWLNPNWQLSGALEYERERY--TR 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  360 RQSSNGNSYSISNTLIYMPNSQQFWFVGFDYYQKNTRLKAYAFERQGIRLGWGQEWPKGISTRLQTSYATRTYRAPSAEK 439
Cdd:pfam04575 148 RKHLDGNIYLVSASLIYYPNPRRYWFGGGDYSREDVQDKADSYDRKGIRFGWGQEWGGGLSTRLRASAAKRQYKGKALFS 227

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514088869  440 NMifapsfFKVVQKNREYGVNFTIWHRSLHWLGITPKITWAYQKTTSNNPFSEYDRNRIYLTFSKTF 506
Cdd:pfam04575 228 GP------FNIKRKDKEYNVSLSLWHRDIHLWGITPKLTYSYRKNNSNVPLYSYNKNNVFVEFSKTF 288
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 93-196 4.57e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 4.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  93 ALKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKA 172
Cdd:COG4783   14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                         90       100
                 ....*....|....*....|....*.
gi 514088869 173 QFNQL--RSENLPAPLLTLIDSYIDA 196
Cdd:COG4783   94 LLEKAlkLDPEHPEAYLRLARAYRAL 119
 
Name Accession Description Interval E-value
SlipAM pfam04575
Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a ...
 203-506 2.29e-133

Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a surface lipoprotein that may have a role in virulence. In Neisseria, it is required for the surface display of lipidated virulence factors. Proteins in this family contain an eight-stranded beta-barrel domain.


Pssm-ID: 398328  Cd Length: 288  Bit Score: 387.86  E-value: 2.29e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  203 WNVYGGVNYLHENNVNNAPPKGTKA---EGFTPSSQPEKAHGLSYFINLSKNWSLAHGFFTEFSADINGKYYWDNHKYDE 279
Cdd:pfam04575   1 WKFNGGFSYIREDNINNAPDKTTYNfikSGNWTFPKPKKANGLSYDLGAEKKWPLSGGHYLEFRADTYGKSYWDNKKYND 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  280 FSTRLNLGGGYRNAKTEVKLIPFVEQFWYvggenatkdarTLHRYSKSSGINLDVDYWLTPNWKISTVLEYTEQRYiqPQ 359
Cdd:pfam04575  81 LSTRAGLGYGYKNAKTDVSVLPFYEKRFY-----------GNDRYYRAIGVRLSKNYWLNPNWQLSGALEYERERY--TR 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  360 RQSSNGNSYSISNTLIYMPNSQQFWFVGFDYYQKNTRLKAYAFERQGIRLGWGQEWPKGISTRLQTSYATRTYRAPSAEK 439
Cdd:pfam04575 148 RKHLDGNIYLVSASLIYYPNPRRYWFGGGDYSREDVQDKADSYDRKGIRFGWGQEWGGGLSTRLRASAAKRQYKGKALFS 227

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514088869  440 NMifapsfFKVVQKNREYGVNFTIWHRSLHWLGITPKITWAYQKTTSNNPFSEYDRNRIYLTFSKTF 506
Cdd:pfam04575 228 GP------FNIKRKDKEYNVSLSLWHRDIHLWGITPKLTYSYRKNNSNVPLYSYNKNNVFVEFSKTF 288
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 93-196 4.57e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 4.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  93 ALKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKA 172
Cdd:COG4783   14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                         90       100
                 ....*....|....*....|....*.
gi 514088869 173 QFNQL--RSENLPAPLLTLIDSYIDA 196
Cdd:COG4783   94 LLEKAlkLDPEHPEAYLRLARAYRAL 119
COG5338 COG5338
Uncharacterized conserved protein [Function unknown];
283-506 4.88e-05

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 444122  Cd Length: 386  Bit Score: 45.77  E-value: 4.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869 283 RLNLGGGYRNAKtevKLIPFVEqfwYVGGE---NATKDARTLHRYSKSSGINLDVDYWLTPNWKISTVLEYTEQRYIQPQ 359
Cdd:COG5338  184 TGGLRLGYELSP---GTALFVE---VRGNRrdyDEAPDTGGYDRDSDGYRARVGVEFDLTGKLSGEVSVGYLERDFDDPR 257

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869 360 RQSSNGNSYSISntLIYMPnsQQFWFVGFD---YYQKNTRLKAYAFERQGIRLGWGQEWPKGISTRLQTSYATRTYRAPS 436
Cdd:COG5338  258 LEDISGPSWEAS--LTWSP--TRLTTVTLTasrSIEETTTAGASGILVTSVSLSVDHELRRNLILSAGAGYGRDDYQGTD 333

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869 437 aeknmifapsffkVVQKNREYGVNFTIWHRSlhWLGITPkiTWAYQKTTSNNPFSEYDRNRIYLTFSKTF 506
Cdd:COG5338  334 -------------RDDDTYSAGLGLTYLLNR--WLSLTG--SYRYEDRDSSLAGRDYDRNRVGLGLRLQL 386
TPR_19 pfam14559
Tetratricopeptide repeat;
130-181 1.15e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 40.26  E-value: 1.15e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 514088869  130 QGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKAQFNQLRSEN 181
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAD 52
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 83-203 5.67e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 39.51  E-value: 5.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  83 PDLVLRALI--PALKNNDMRGAEIL-LPIYAQQSPDPLLLKwaqAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAI 159
Cdd:PRK09782  10 SGLLLTSLLstSALADNIGTSAEELgLSDYRHFVIYPRLDK---ALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAE 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 514088869 160 ALTQNRENEAAKAQF-NQLRSENLPAPL---LTLIDSYIDAINQRDSW 203
Cdd:PRK09782  87 AYRHFGHDDRARLLLeDQLKRHPGDARLersLAAIPVEVKSVTTVEEL 134
 
Name Accession Description Interval E-value
SlipAM pfam04575
Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a ...
 203-506 2.29e-133

Surface lipoprotein assembly modifier; Surface lipoprotein assembly modifier (Slam) is a surface lipoprotein that may have a role in virulence. In Neisseria, it is required for the surface display of lipidated virulence factors. Proteins in this family contain an eight-stranded beta-barrel domain.


Pssm-ID: 398328  Cd Length: 288  Bit Score: 387.86  E-value: 2.29e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  203 WNVYGGVNYLHENNVNNAPPKGTKA---EGFTPSSQPEKAHGLSYFINLSKNWSLAHGFFTEFSADINGKYYWDNHKYDE 279
Cdd:pfam04575   1 WKFNGGFSYIREDNINNAPDKTTYNfikSGNWTFPKPKKANGLSYDLGAEKKWPLSGGHYLEFRADTYGKSYWDNKKYND 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  280 FSTRLNLGGGYRNAKTEVKLIPFVEQFWYvggenatkdarTLHRYSKSSGINLDVDYWLTPNWKISTVLEYTEQRYiqPQ 359
Cdd:pfam04575  81 LSTRAGLGYGYKNAKTDVSVLPFYEKRFY-----------GNDRYYRAIGVRLSKNYWLNPNWQLSGALEYERERY--TR 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  360 RQSSNGNSYSISNTLIYMPNSQQFWFVGFDYYQKNTRLKAYAFERQGIRLGWGQEWPKGISTRLQTSYATRTYRAPSAEK 439
Cdd:pfam04575 148 RKHLDGNIYLVSASLIYYPNPRRYWFGGGDYSREDVQDKADSYDRKGIRFGWGQEWGGGLSTRLRASAAKRQYKGKALFS 227

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514088869  440 NMifapsfFKVVQKNREYGVNFTIWHRSLHWLGITPKITWAYQKTTSNNPFSEYDRNRIYLTFSKTF 506
Cdd:pfam04575 228 GP------FNIKRKDKEYNVSLSLWHRDIHLWGITPKLTYSYRKNNSNVPLYSYNKNNVFVEFSKTF 288
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 93-196 4.57e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 4.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  93 ALKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKA 172
Cdd:COG4783   14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                         90       100
                 ....*....|....*....|....*.
gi 514088869 173 QFNQL--RSENLPAPLLTLIDSYIDA 196
Cdd:COG4783   94 LLEKAlkLDPEHPEAYLRLARAYRAL 119
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 94-176 1.52e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.68  E-value: 1.52e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  94 LKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKAQ 173
Cdd:COG3914  123 LALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAA 202


                 ...
gi 514088869 174 FNQ 176
Cdd:COG3914  203 YRR 205
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 70-181 1.99e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 1.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  70 QQISLTIEQLASRPDLVLRALIPALKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPN 149
Cdd:COG5010    7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                         90       100       110
                 ....*....|....*....|....*....|..
gi 514088869 150 LQPARLQLAIALTQNRENEAAKAQFNQLRSEN 181
Cdd:COG5010   87 NPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 85-181 3.81e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 3.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  85 LVLRALIpALKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQN 164
Cdd:COG4783   41 FALLGEI-LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119

                         90
                 ....*....|....*..
gi 514088869 165 RENEAAKAQFNQLRSEN 181
Cdd:COG4783  120 GRPDEAIAALEKALELD 136
COG5338 COG5338
Uncharacterized conserved protein [Function unknown];
283-506 4.88e-05

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 444122  Cd Length: 386  Bit Score: 45.77  E-value: 4.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869 283 RLNLGGGYRNAKtevKLIPFVEqfwYVGGE---NATKDARTLHRYSKSSGINLDVDYWLTPNWKISTVLEYTEQRYIQPQ 359
Cdd:COG5338  184 TGGLRLGYELSP---GTALFVE---VRGNRrdyDEAPDTGGYDRDSDGYRARVGVEFDLTGKLSGEVSVGYLERDFDDPR 257

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869 360 RQSSNGNSYSISntLIYMPnsQQFWFVGFD---YYQKNTRLKAYAFERQGIRLGWGQEWPKGISTRLQTSYATRTYRAPS 436
Cdd:COG5338  258 LEDISGPSWEAS--LTWSP--TRLTTVTLTasrSIEETTTAGASGILVTSVSLSVDHELRRNLILSAGAGYGRDDYQGTD 333

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869 437 aeknmifapsffkVVQKNREYGVNFTIWHRSlhWLGITPkiTWAYQKTTSNNPFSEYDRNRIYLTFSKTF 506
Cdd:COG5338  334 -------------RDDDTYSAGLGLTYLLNR--WLSLTG--SYRYEDRDSSLAGRDYDRNRVGLGLRLQL 386
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 111-181 6.17e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.72  E-value: 6.17e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 514088869 111 QQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKAQFNQLRSEN 181
Cdd:COG2956   70 ERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG 140
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
82-176 1.01e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.75  E-value: 1.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  82 RPDLVLRALIPALKNNDMRGAEILLPIYAQQsPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIAL 161
Cdd:COG4785   39 IALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAY 117

                         90
                 ....*....|....*
gi 514088869 162 TQNRENEAAKAQFNQ 176
Cdd:COG4785  118 LLLGDYDAALEDFDR 132
TPR_19 pfam14559
Tetratricopeptide repeat;
130-181 1.15e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 40.26  E-value: 1.15e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 514088869  130 QGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKAQFNQLRSEN 181
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAD 52
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 109-203 1.46e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869 109 YAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKAQFNQLRS---ENLPAp 185
Cdd:COG2956  136 LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEqdpDYLPA- 214

                         90
                 ....*....|....*...
gi 514088869 186 LLTLIDSYiDAINQRDSW 203
Cdd:COG2956  215 LPRLAELY-EKLGDPEEA 231
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 93-181 1.58e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 1.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  93 ALKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKA 172
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143


                 ....*....
gi 514088869 173 QFNQLRSEN 181
Cdd:COG5010  144 ALQRALGTS 152
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 93-180 2.12e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 2.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  93 ALKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVAR---KQGKLSESVRLYRQIIAEKPN---LQPARLQLAIALTQNRE 166
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEayyALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGD 82

                         90
                 ....*....|....
gi 514088869 167 NEAAKAQFNQLRSE 180
Cdd:COG1729   83 YDKARATLEELIKK 96
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 93-196 3.01e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 3.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  93 ALKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKA 172
Cdd:COG2956  154 YLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE 233

                         90       100
                 ....*....|....*....|....*
gi 514088869 173 QFNQ-LRSENLPAPLLTLIDSYIDA 196
Cdd:COG2956  234 LLRKaLELDPSDDLLLALADLLERK 258
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 70-196 3.52e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.06  E-value: 3.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  70 QQISLTIEQLASRPDLVLRALipaLKNNDMRGAEILLPIYAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPN 149
Cdd:COG3914   68 AAAAAALLLLAALLELAALLL---QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 514088869 150 LQPARLQLAIALTQNRENEAAKAQFNQL--RSENLPAPLLTLIDSYIDA 196
Cdd:COG3914  145 FAEAYLNLGEALRRLGRLEEAIAALRRAleLDPDNAEALNNLGNALQDL 193
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 111-177 4.06e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 4.06e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 514088869 111 QQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKAQFNQL 177
Cdd:COG4235   11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 79-177 2.06e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 2.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  79 LASRPDLV----LRALIpALKNNDMRGAEILLPIYAQQSPD--PLLLKWAQAmvARKQGKLSESVRLYRQIIAEKPNLqP 152
Cdd:COG2956  171 LKLDPDCArallLLAEL-YLEQGDYEEAIAALERALEQDPDylPALPRLAEL--YEKLGDPEEALELLRKALELDPSD-D 246

                         90       100
                 ....*....|....*....|....*
gi 514088869 153 ARLQLAIALTQNRENEAAKAQFNQL 177
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 87-195 2.19e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  87 LRALIPALKNNDMRGAEILLPIyAQQSPDPLLLKWAQAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRE 166
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEA-LELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100       110
                 ....*....|....*....|....*....|.
gi 514088869 167 NEAAKAQFNQLRSENL--PAPLLTLIDSYID 195
Cdd:COG2956   92 LDRAEELLEKLLELDPddAEALRLLAEIYEQ 122
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
111-181 4.34e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 4.34e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 514088869 111 QQSPDPLLLKWAQAMVARKQGKLSESVRlYRQIIAEKPNLQPARLQLAIALTQNRENEAAKAQFNQLRSEN 181
Cdd:COG3063   20 ELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 83-203 5.67e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 39.51  E-value: 5.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 514088869  83 PDLVLRALI--PALKNNDMRGAEIL-LPIYAQQSPDPLLLKwaqAMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAI 159
Cdd:PRK09782  10 SGLLLTSLLstSALADNIGTSAEELgLSDYRHFVIYPRLDK---ALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAE 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 514088869 160 ALTQNRENEAAKAQF-NQLRSENLPAPL---LTLIDSYIDAINQRDSW 203
Cdd:PRK09782  87 AYRHFGHDDRARLLLeDQLKRHPGDARLersLAAIPVEVKSVTTVEEL 134
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
124-201 6.08e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.45  E-value: 6.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 514088869 124 AMVARKQGKLSESVRLYRQIIAEKPNLQPARLQLAIALTQNRENEAAKAQFNQLRSENLPAPLLTLIDSYIDAINQRD 201
Cdd:COG0457  117 GLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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