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Conserved domains on  [gi|513881199|ref|WP_016526780|]
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DUF5839 family protein [Lactiplantibacillus plantarum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5839 super family cl41141
Family of unknown function (DUF5839); This family of unknown function is associated with the ...
 1-61 1.99e-07

Family of unknown function (DUF5839); This family of unknown function is associated with the biosynthetic gene cluster for glycocin F. The family appears to be restricted to Firmicutes.


The actual alignment was detected with superfamily member pfam19157:

Pssm-ID: 465983  Cd Length: 83  Bit Score: 44.62  E-value: 1.99e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 513881199   1 MADNVLMAYHIvhDPDERAKHVLNTKKLYKWRITE-KTKGTPVVGNVALVQTQFAKRtPVMI 61
Cdd:pfam19157  1 KENNTISAFHI--NKDEEGNIKLNTKKEYFWRIPKhLRNGPIQLGDIVLVRTKYGWK-PVLV 59
 
Name Accession Description Interval E-value
DUF5839 pfam19157
Family of unknown function (DUF5839); This family of unknown function is associated with the ...
 1-61 1.99e-07

Family of unknown function (DUF5839); This family of unknown function is associated with the biosynthetic gene cluster for glycocin F. The family appears to be restricted to Firmicutes.


Pssm-ID: 465983  Cd Length: 83  Bit Score: 44.62  E-value: 1.99e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 513881199   1 MADNVLMAYHIvhDPDERAKHVLNTKKLYKWRITE-KTKGTPVVGNVALVQTQFAKRtPVMI 61
Cdd:pfam19157  1 KENNTISAFHI--NKDEEGNIKLNTKKEYFWRIPKhLRNGPIQLGDIVLVRTKYGWK-PVLV 59
 
Name Accession Description Interval E-value
DUF5839 pfam19157
Family of unknown function (DUF5839); This family of unknown function is associated with the ...
 1-61 1.99e-07

Family of unknown function (DUF5839); This family of unknown function is associated with the biosynthetic gene cluster for glycocin F. The family appears to be restricted to Firmicutes.


Pssm-ID: 465983  Cd Length: 83  Bit Score: 44.62  E-value: 1.99e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 513881199   1 MADNVLMAYHIvhDPDERAKHVLNTKKLYKWRITE-KTKGTPVVGNVALVQTQFAKRtPVMI 61
Cdd:pfam19157  1 KENNTISAFHI--NKDEEGNIKLNTKKEYFWRIPKhLRNGPIQLGDIVLVRTKYGWK-PVLV 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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