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Conserved domains on  [gi|513128375|gb|AGO16595|]
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hypothetical protein K756_07185 [Glaesserella parasuis ZJ0906]

Protein Classification

hotdog family protein( domain architecture ID 107)

hotdog family protein may have metabolic roles such as thioester hydrolysis in fatty acid metabolism and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
hot_dog super family cl00509
The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl ...
 2-134 2.40e-43

The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.


The actual alignment was detected with superfamily member PRK10254:

Pssm-ID: 469797  Cd Length: 137  Bit Score: 139.35  E-value: 2.40e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375   2 EKNTTIEQLNQLCQHSAISHLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGT 81
Cdd:PRK10254   4 KRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGT 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 513128375  82 ELNISHLKAIKSGKATGRATPLHLGKESQVWQIEIRDDAQQLCAVARLSTKLL 134
Cdd:PRK10254  84 ELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVL 136
 
Name Accession Description Interval E-value
PRK10254 PRK10254
proofreading thioesterase EntH;
2-134 2.40e-43

proofreading thioesterase EntH;


Pssm-ID: 182337  Cd Length: 137  Bit Score: 139.35  E-value: 2.40e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375   2 EKNTTIEQLNQLCQHSAISHLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGT 81
Cdd:PRK10254   4 KRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGT 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 513128375  82 ELNISHLKAIKSGKATGRATPLHLGKESQVWQIEIRDDAQQLCAVARLSTKLL 134
Cdd:PRK10254  84 ELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVL 136
unchar_dom_1 TIGR00369
uncharacterized domain 1; Most proteins containing this domain consist almost entirely of a ...
 17-131 6.67e-41

uncharacterized domain 1; Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.


Pssm-ID: 161843 [Multi-domain]  Cd Length: 117  Bit Score: 132.08  E-value: 6.67e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375   17 SAISHLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGTELNISHLKAIKSGKA 96
Cdd:TIGR00369   1 PLVSFLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREGKV 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 513128375   97 TGRATPLHLGKESQVWQIEIRDDAQQLCAVARLST 131
Cdd:TIGR00369  81 RAIAQVVHLGRQTGVAEIEIVDEQGRLCALSRGTT 115
PaaI COG2050
Acyl-CoA thioesterase PaaI, contains HGG motif [Secondary metabolites biosynthesis, transport ...
 4-137 4.56e-39

Acyl-CoA thioesterase PaaI, contains HGG motif [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441653 [Multi-domain]  Cd Length: 138  Bit Score: 128.14  E-value: 4.56e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375   4 NTTIEQLNQLCQHSAIS-HLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGTE 82
Cdd:COG2050    2 SDPLERLEGFLAANPFAeLLGIELVEVEPGRAVLRLPVRPEHLNPPGTVHGGALAALADSAAGLAANSALPPGRRAVTIE 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 513128375  83 LNISHLKAIKSGKA-TGRATPLHLGKESQVWQIEIRDDAQQLCAVARLSTKLLSQR 137
Cdd:COG2050   82 LNINFLRPARLGDRlTAEARVVRRGRRLAVVEVEVTDEDGKLVATATGTFAVLPKR 137
PaaI_thioesterase cd03443
PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several ...
 21-128 3.81e-34

PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).


Pssm-ID: 239527 [Multi-domain]  Cd Length: 113  Bit Score: 114.96  E-value: 3.81e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375  21 HLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGTELNISHLKAIKSGKATGRA 100
Cdd:cd03443    1 LLGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGGDLTARA 80

                         90       100
                 ....*....|....*....|....*...
gi 513128375 101 TPLHLGKESQVWQIEIRDDAQQLCAVAR 128
Cdd:cd03443   81 RVVKLGRRLAVVEVEVTDEDGKLVATAR 108
4HBT pfam03061
Thioesterase superfamily; This family contains a wide variety of enzymes, principally ...
 48-125 2.18e-19

Thioesterase superfamily; This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyzes the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyze the hydrolysis of other long chain fatty acyl-CoA thioesters.


Pssm-ID: 427116 [Multi-domain]  Cd Length: 79  Bit Score: 76.52  E-value: 2.18e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 513128375   48 FGLLHGGISATLAETLGSAAALLCCEENQIPVGTELNISHLKAIKSG-KATGRATPLHLGKESQVWQIEIRDDAQQLCA 125
Cdd:pfam03061   1 GGVVHGGVYLALADEAAGAAARRLGGSQQVVVVVELSIDFLRPARLGdRLTVEARVVRLGRTSAVVEVEVRDEDGRLVA 79
 
Name Accession Description Interval E-value
PRK10254 PRK10254
proofreading thioesterase EntH;
2-134 2.40e-43

proofreading thioesterase EntH;


Pssm-ID: 182337  Cd Length: 137  Bit Score: 139.35  E-value: 2.40e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375   2 EKNTTIEQLNQLCQHSAISHLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGT 81
Cdd:PRK10254   4 KRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGT 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 513128375  82 ELNISHLKAIKSGKATGRATPLHLGKESQVWQIEIRDDAQQLCAVARLSTKLL 134
Cdd:PRK10254  84 ELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVL 136
unchar_dom_1 TIGR00369
uncharacterized domain 1; Most proteins containing this domain consist almost entirely of a ...
 17-131 6.67e-41

uncharacterized domain 1; Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.


Pssm-ID: 161843 [Multi-domain]  Cd Length: 117  Bit Score: 132.08  E-value: 6.67e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375   17 SAISHLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGTELNISHLKAIKSGKA 96
Cdd:TIGR00369   1 PLVSFLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREGKV 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 513128375   97 TGRATPLHLGKESQVWQIEIRDDAQQLCAVARLST 131
Cdd:TIGR00369  81 RAIAQVVHLGRQTGVAEIEIVDEQGRLCALSRGTT 115
PaaI COG2050
Acyl-CoA thioesterase PaaI, contains HGG motif [Secondary metabolites biosynthesis, transport ...
 4-137 4.56e-39

Acyl-CoA thioesterase PaaI, contains HGG motif [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441653 [Multi-domain]  Cd Length: 138  Bit Score: 128.14  E-value: 4.56e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375   4 NTTIEQLNQLCQHSAIS-HLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGTE 82
Cdd:COG2050    2 SDPLERLEGFLAANPFAeLLGIELVEVEPGRAVLRLPVRPEHLNPPGTVHGGALAALADSAAGLAANSALPPGRRAVTIE 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 513128375  83 LNISHLKAIKSGKA-TGRATPLHLGKESQVWQIEIRDDAQQLCAVARLSTKLLSQR 137
Cdd:COG2050   82 LNINFLRPARLGDRlTAEARVVRRGRRLAVVEVEVTDEDGKLVATATGTFAVLPKR 137
PRK10293 PRK10293
1,4-dihydroxy-2-naphthoyl-CoA hydrolase;
2-134 5.07e-37

1,4-dihydroxy-2-naphthoyl-CoA hydrolase;


Pssm-ID: 182360  Cd Length: 136  Bit Score: 123.20  E-value: 5.07e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375   2 EKNTTIEQLNQLCQHSAISHLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGT 81
Cdd:PRK10293   4 KRKITLEALNAMGEGNMVGLLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 513128375  82 ELNISHLKAIKSGKATGRATPLHLGKESQVWQIEIRDDAQQLCAVARLSTKLL 134
Cdd:PRK10293  84 EINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL 136
PaaI_thioesterase cd03443
PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several ...
 21-128 3.81e-34

PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).


Pssm-ID: 239527 [Multi-domain]  Cd Length: 113  Bit Score: 114.96  E-value: 3.81e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375  21 HLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGTELNISHLKAIKSGKATGRA 100
Cdd:cd03443    1 LLGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGGDLTARA 80

                         90       100
                 ....*....|....*....|....*...
gi 513128375 101 TPLHLGKESQVWQIEIRDDAQQLCAVAR 128
Cdd:cd03443   81 RVVKLGRRLAVVEVEVTDEDGKLVATAR 108
4HBT pfam03061
Thioesterase superfamily; This family contains a wide variety of enzymes, principally ...
 48-125 2.18e-19

Thioesterase superfamily; This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyzes the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyze the hydrolysis of other long chain fatty acyl-CoA thioesters.


Pssm-ID: 427116 [Multi-domain]  Cd Length: 79  Bit Score: 76.52  E-value: 2.18e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 513128375   48 FGLLHGGISATLAETLGSAAALLCCEENQIPVGTELNISHLKAIKSG-KATGRATPLHLGKESQVWQIEIRDDAQQLCA 125
Cdd:pfam03061   1 GGVVHGGVYLALADEAAGAAARRLGGSQQVVVVVELSIDFLRPARLGdRLTVEARVVRLGRTSAVVEVEVRDEDGRLVA 79
PLN02322 PLN02322
acyl-CoA thioesterase
 18-116 3.19e-14

acyl-CoA thioesterase


Pssm-ID: 177956  Cd Length: 154  Bit Score: 65.08  E-value: 3.19e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513128375  18 AISHLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIpVGTELNISHLKAIKSGK-A 96
Cdd:PLN02322  12 PLHMLGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRV-AGIQLSINHLKSADLGDlV 90

                         90       100
                 ....*....|....*....|
gi 513128375  97 TGRATPLHLGKESQVWQIEI 116
Cdd:PLN02322  91 FAEATPVSTGKTIQVWEVKL 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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