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Conserved domains on  [gi|512960259|ref|XP_004842408|]
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carbonyl reductase [NADPH] 1 isoform X1 [Heterocephalus glaber]

Protein Classification

SDR family oxidoreductase( domain architecture ID 10143144)

SDR family NAD(P)-dependent oxidoreductase with similarity to mammalian carbonyl reductase, which catalyzes the NADPH-dependent reduction of a wide range of substrates including quinones, prostaglandins, and other carbonyl-containing compounds

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
carb_red_PTCR-like_SDR_c cd05324
Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR ...
6-277 1.45e-123

Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


:

Pssm-ID: 187585 [Multi-domain]  Cd Length: 225  Bit Score: 351.54  E-value: 1.45e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05324    1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDDASIEAAADFVEEKYGGLD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMADP-TPFHIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMalkgcspelqqkfrset 162
Cdd:cd05324   81 ILVNNAGIAFKGFDDsTPTREQARETMKTNFFGTVDVTQALLPLLKKspAGRIVNVSSGLGSL----------------- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 iteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLSEerggDKILLNACCPGWVRTDMAGPSATK 242
Cdd:cd05324  144 ----------------------------TSAYGVSKAALNALTRILAKELKE----TGIKVNACCPGWVKTDMGGGKAPK 191
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 512960259 243 SPEEGAETPIYLALLPPDSrGPHGQFVQEKRVEQW 277
Cdd:cd05324  192 TPEEGAETPVYLALLPPDG-EPTGKFFSDKKVVPW 225
 
Name Accession Description Interval E-value
carb_red_PTCR-like_SDR_c cd05324
Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR ...
6-277 1.45e-123

Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187585 [Multi-domain]  Cd Length: 225  Bit Score: 351.54  E-value: 1.45e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05324    1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDDASIEAAADFVEEKYGGLD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMADP-TPFHIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMalkgcspelqqkfrset 162
Cdd:cd05324   81 ILVNNAGIAFKGFDDsTPTREQARETMKTNFFGTVDVTQALLPLLKKspAGRIVNVSSGLGSL----------------- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 iteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLSEerggDKILLNACCPGWVRTDMAGPSATK 242
Cdd:cd05324  144 ----------------------------TSAYGVSKAALNALTRILAKELKE----TGIKVNACCPGWVKTDMGGGKAPK 191
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 512960259 243 SPEEGAETPIYLALLPPDSrGPHGQFVQEKRVEQW 277
Cdd:cd05324  192 TPEEGAETPVYLALLPPDG-EPTGKFFSDKKVVPW 225
FabG COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and ...
6-269 5.22e-45

NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism]; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440651 [Multi-domain]  Cd Length: 249  Bit Score: 152.25  E-value: 5.22e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:COG1028    7 KVALVTGGSSGIGRAIARALAAE--GaRVVITDRDAEALEAAAAELRAAGGRALAVAADVTDEAAVEALVAAAVAAFGRL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIafkmADPTPFH-IQAEV---TIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKGcspelqqkf 158
Cdd:COG1028   85 DILVNNAGI----TPPGPLEeLTEEDwdrVLDVNLKGPFLLTRAALPHMRerGGGRIVNISSIAGLRGSPG--------- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 159 rsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTDMAGP 238
Cdd:COG1028  152 --------------------------------QAAYAASKAAVVGLTRSLALEL----APRGIRVNAVAPGPIDTPMTRA 195
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 512960259 239 SATK-----------------SPEEGAETpiYLALLPPDSRGPHGQFV 269
Cdd:COG1028  196 LLGAeevrealaariplgrlgTPEEVAAA--VLFLASDAASYITGQVL 241
adh_short pfam00106
short chain dehydrogenase; This family contains a wide variety of dehydrogenases.
6-238 3.23e-38

short chain dehydrogenase; This family contains a wide variety of dehydrogenases.


Pssm-ID: 395056 [Multi-domain]  Cd Length: 195  Bit Score: 133.12  E-value: 3.23e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259    6 RVALVTGANKGIGFAItrdlCRRFS---GDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:pfam00106   1 KVALVTGASSGIGRAI----AKRLAkegAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQVKALVEQAVERLG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   83 GLDVLINNAGIafkmADPTPFHIQAEV----TIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMalkgcspelqq 156
Cdd:pfam00106  77 RLDILVNNAGI----TGLGPFSELSDEdwerVIDVNLTGVFNLTRAVLPAMIkgSGGRIVNISSVAGLV----------- 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  157 kfrsetiteeelvglmnkfvedtknkvhekeGWPS-SAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDM 235
Cdd:pfam00106 142 -------------------------------PYPGgSAYSASKAAVIGFT----RSLALELAPHGIRVNAVAPGGVDTDM 186

                  ...
gi 512960259  236 AGP 238
Cdd:pfam00106 187 TKE 189
PRK12939 PRK12939
short chain dehydrogenase; Provisional
5-267 1.40e-33

short chain dehydrogenase; Provisional


Pssm-ID: 183833 [Multi-domain]  Cd Length: 250  Bit Score: 122.39  E-value: 1.40e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK12939   7 GKRALVTGAARGLGAAFAEALAEA-GATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAfKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKgcspelqqkfrse 161
Cdd:PRK12939  86 DGLVNNAGIT-NSKSATELDIDTwDAVMNVNVRGTFLMLRAALPHLRdsGRGRIVNLASDTALWGAP------------- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 162 titeeelvGLMnkfvedtknkvhekegwpssAYGVSKIGVTVLSRIHARklseERGGDKILLNACCPGWVRTDM--AGPS 239
Cdd:PRK12939 152 --------KLG--------------------AYVASKGAVIGMTRSLAR----ELGGRGITVNAIAPGLTATEAtaYVPA 199
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 512960259 240 -------ATKSPEEGAETPIYLA-----LLPPDSRGPHGQ 267
Cdd:PRK12939 200 derhayyLKGRALERLQVPDDVAgavlfLLSDAARFVTGQ 239
PKS_KR smart00822
This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step ...
9-93 6.92e-09

This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.


Pssm-ID: 214833 [Multi-domain]  Cd Length: 180  Bit Score: 54.03  E-value: 6.92e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259     9 LVTGANKGIGFAITRDLCRRFSGDVVLTAR---DEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:smart00822   4 LITGGLGGLGRALARWLAERGARRLVLLSRsgpDAPGAAALLAELEAAGARVTVVACDVADRDALAAVLAAIPAVEGPLT 83

                   ....*...
gi 512960259    86 VLINNAGI 93
Cdd:smart00822  84 GVIHAAGV 91
SDR_subfam_2 TIGR04504
SDR family mycofactocin-dependent oxidoreductase; Members of this protein subfamily are ...
6-240 2.71e-05

SDR family mycofactocin-dependent oxidoreductase; Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. All members occur in genomes that encode a cassette for the biosynthesis of mycofactocin, a proposed electron carrier of a novel redox pool. Characterized members of this family are described as NDMA-dependent, meaning that a blue aniline dye serving as an artificial electron acceptor is required for members of this family to cycle in vitro, since the bound NAD residue is not exchangeable. This family resembles TIGR03971 most closely in the N-terminal region, consistent with the published hypothesis of NAD interaction with mycofactocin. See EC 1.1.99.36. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 275297 [Multi-domain]  Cd Length: 259  Bit Score: 44.62  E-value: 2.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259    6 RVALVTGANKGIGFAITRDLCRRfsG-DVVLTarDEARGRAAV-------QQLQ--AEGLSPRFHQL--DIDDLQSIRAV 73
Cdd:TIGR04504   2 RVALVTGAARGIGAATVRRLAAD--GwRVVAV--DLCADDPAVgyplatrAELDavAAACPDQVLPViaDVRDPAALAAA 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   74 RDFLRKEYGGLDVLINNAGIafkMADPTPFHIQA----EVTIKTNFYGTRDVCTELLP--LIKP---GGRVVNVSSMTSL 144
Cdd:TIGR04504  78 VALAVERWGRLDAAVAAAGV---IAGGRPLWETTdaelDLLLDVNLRGVWNLARAAVPamLARPdprGGRFVAVASAAAT 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  145 MALkgcspelqqkfrsetiteeelvglmnkfvedtknkvhekegWPSSAYGVSKIGVTVLsrihARKLSEERGGDKILLN 224
Cdd:TIGR04504 155 RGL-----------------------------------------PHLAAYCAAKHAVVGL----VRGLAADLGGTGVTAN 189
                         250
                  ....*....|....*.
gi 512960259  225 ACCPGWVRTDMAGPSA 240
Cdd:TIGR04504 190 AVSPGSTRTAMLAATA 205
 
Name Accession Description Interval E-value
carb_red_PTCR-like_SDR_c cd05324
Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR ...
6-277 1.45e-123

Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187585 [Multi-domain]  Cd Length: 225  Bit Score: 351.54  E-value: 1.45e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05324    1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDDASIEAAADFVEEKYGGLD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMADP-TPFHIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMalkgcspelqqkfrset 162
Cdd:cd05324   81 ILVNNAGIAFKGFDDsTPTREQARETMKTNFFGTVDVTQALLPLLKKspAGRIVNVSSGLGSL----------------- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 iteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLSEerggDKILLNACCPGWVRTDMAGPSATK 242
Cdd:cd05324  144 ----------------------------TSAYGVSKAALNALTRILAKELKE----TGIKVNACCPGWVKTDMGGGKAPK 191
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 512960259 243 SPEEGAETPIYLALLPPDSrGPHGQFVQEKRVEQW 277
Cdd:cd05324  192 TPEEGAETPVYLALLPPDG-EPTGKFFSDKKVVPW 225
FabG COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and ...
6-269 5.22e-45

NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism]; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440651 [Multi-domain]  Cd Length: 249  Bit Score: 152.25  E-value: 5.22e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:COG1028    7 KVALVTGGSSGIGRAIARALAAE--GaRVVITDRDAEALEAAAAELRAAGGRALAVAADVTDEAAVEALVAAAVAAFGRL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIafkmADPTPFH-IQAEV---TIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKGcspelqqkf 158
Cdd:COG1028   85 DILVNNAGI----TPPGPLEeLTEEDwdrVLDVNLKGPFLLTRAALPHMRerGGGRIVNISSIAGLRGSPG--------- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 159 rsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTDMAGP 238
Cdd:COG1028  152 --------------------------------QAAYAASKAAVVGLTRSLALEL----APRGIRVNAVAPGPIDTPMTRA 195
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 512960259 239 SATK-----------------SPEEGAETpiYLALLPPDSRGPHGQFV 269
Cdd:COG1028  196 LLGAeevrealaariplgrlgTPEEVAAA--VLFLASDAASYITGQVL 241
SDR_c cd05233
classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a ...
8-269 1.04e-43

classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212491 [Multi-domain]  Cd Length: 234  Bit Score: 148.20  E-value: 1.04e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQqLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVL 87
Cdd:cd05233    1 ALVTGASSGIGRAIARRLARE-GAKVVLADRNEEALAELAA-IEALGGNAVAVQADVSDEEDVEALVEEALEEFGRLDIL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  88 INNAGIAFkmaDPTPFHIQAEV---TIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKGcspelqqkfrset 162
Cdd:cd05233   79 VNNAGIAR---PGPLEELTDEDwdrVLDVNLTGVFLLTRAALPHMKkqGGGRIVNISSVAGLRPLPG------------- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 iteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDMAGPSATK 242
Cdd:cd05233  143 ----------------------------QAAYAASKAALEGLTRS----LALELAPYGIRVNAVAPGLVDTPMLAKLGPE 190
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 512960259 243 ----------------SPEEGAETpiYLALLPPDSRGPHGQFV 269
Cdd:cd05233  191 eaekelaaaiplgrlgTPEEVAEA--VVFLASDEASYITGQVI 231
YqjQ COG0300
Short-chain dehydrogenase [General function prediction only];
1-250 2.38e-43

Short-chain dehydrogenase [General function prediction only];


Pssm-ID: 440069 [Multi-domain]  Cd Length: 252  Bit Score: 148.09  E-value: 2.38e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRK 79
Cdd:COG0300    1 MSLTGKTVLITGASSGIGRALARALAAR--GaRVVLVARDAERLEALAAELRAAGARVEVVALDVTDPDAVAALAEAVLA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  80 EYGGLDVLINNAGIAF--KMADPTPFHIQAevTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKGcspelq 155
Cdd:COG0300   79 RFGPIDVLVNNAGVGGggPFEELDLEDLRR--VFEVNVFGPVRLTRALLPLMRarGRGRIVNVSSVAGLRGLPG------ 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDM 235
Cdd:COG0300  151 -----------------------------------MAAYAASKAALEGFSES----LRAELAPTGVRVTAVCPGPVDTPF 191
                        250       260
                 ....*....|....*....|.
gi 512960259 236 AGPSATK------SPEEGAET 250
Cdd:COG0300  192 TARAGAPagrpllSPEEVARA 212
retinol-DH_like_SDR_c_like cd05327
retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) ...
6-275 1.77e-40

retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs; Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212492 [Multi-domain]  Cd Length: 269  Bit Score: 141.21  E-value: 1.77e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPR--FHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:cd05327    2 KVVVITGANSGIGKETARELAKR-GAHVIIACRNEEKGEEAAAEIKKETGNAKveVIQLDLSSLASVRQFAEEFLARFPR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIafkMAdpTPFHIQA---EVTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMAlkgcspelqqkf 158
Cdd:cd05327   81 LDILINNAGI---MA--PPRRLTKdgfELQFAVNYLGHFLLTNLLLPVLKasAPSRIVNVSSIAHRAG------------ 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 159 rsetiteeelvglmnKFVEDTKNKVHEKEGWPSSAYGVSKigvtvLSRI-HARKLSEERGGDKILLNACCPGWVRTDM-- 235
Cdd:cd05327  144 ---------------PIDFNDLDLENNKEYSPYKAYGQSK-----LANIlFTRELARRLEGTGVTVNALHPGVVRTELlr 203
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 512960259 236 -----------AGPSATKSPEEGAETPIYLALLPPDSRGPHGQFVQEKRVE 275
Cdd:cd05327  204 rngsffllyklLRPFLKKSPEQGAQTALYAATSPELEGVSGKYFSDCKIKM 254
adh_short pfam00106
short chain dehydrogenase; This family contains a wide variety of dehydrogenases.
6-238 3.23e-38

short chain dehydrogenase; This family contains a wide variety of dehydrogenases.


Pssm-ID: 395056 [Multi-domain]  Cd Length: 195  Bit Score: 133.12  E-value: 3.23e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259    6 RVALVTGANKGIGFAItrdlCRRFS---GDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:pfam00106   1 KVALVTGASSGIGRAI----AKRLAkegAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQVKALVEQAVERLG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   83 GLDVLINNAGIafkmADPTPFHIQAEV----TIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMalkgcspelqq 156
Cdd:pfam00106  77 RLDILVNNAGI----TGLGPFSELSDEdwerVIDVNLTGVFNLTRAVLPAMIkgSGGRIVNISSVAGLV----------- 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  157 kfrsetiteeelvglmnkfvedtknkvhekeGWPS-SAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDM 235
Cdd:pfam00106 142 -------------------------------PYPGgSAYSASKAAVIGFT----RSLALELAPHGIRVNAVAPGGVDTDM 186

                  ...
gi 512960259  236 AGP 238
Cdd:pfam00106 187 TKE 189
YdfG COG4221
NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Energy production and conversion]; ...
1-260 6.49e-34

NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Energy production and conversion]; NADP-dependent 3-hydroxy acid dehydrogenase YdfG is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 443365 [Multi-domain]  Cd Length: 240  Bit Score: 122.98  E-value: 6.49e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARGRAAVQQLqaeGLSPRFHQLDIDDLQSIRAVRDFLRK 79
Cdd:COG4221    1 MSDKGKVALITGASSGIGAATARALAAA--GaRVVLAARRAERLEALAAEL---GGRALAVPLDVTDEAAVEAAVAAAVA 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  80 EYGGLDVLINNAGIA----FKMADPTPFHIQAEVTIKTNFYGTRdvctELLPLIKP--GGRVVNVSSMTSLMALKGcspe 153
Cdd:COG4221   76 EFGRLDVLVNNAGVAllgpLEELDPEDWDRMIDVNVKGVLYVTR----AALPAMRArgSGHIVNISSIAGLRPYPG---- 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 154 lqqkfrsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRT 233
Cdd:COG4221  148 -------------------------------------GAVYAATKAAVRGLSES----LRAELRPTGIRVTVIEPGAVDT 186
                        250       260
                 ....*....|....*....|....*..
gi 512960259 234 DMAGPSATKSPEEGAETPIYLALLPPD 260
Cdd:COG4221  187 EFLDSVFDGDAEAAAAVYEGLEPLTPE 213
PRK12939 PRK12939
short chain dehydrogenase; Provisional
5-267 1.40e-33

short chain dehydrogenase; Provisional


Pssm-ID: 183833 [Multi-domain]  Cd Length: 250  Bit Score: 122.39  E-value: 1.40e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK12939   7 GKRALVTGAARGLGAAFAEALAEA-GATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAfKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKgcspelqqkfrse 161
Cdd:PRK12939  86 DGLVNNAGIT-NSKSATELDIDTwDAVMNVNVRGTFLMLRAALPHLRdsGRGRIVNLASDTALWGAP------------- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 162 titeeelvGLMnkfvedtknkvhekegwpssAYGVSKIGVTVLSRIHARklseERGGDKILLNACCPGWVRTDM--AGPS 239
Cdd:PRK12939 152 --------KLG--------------------AYVASKGAVIGMTRSLAR----ELGGRGITVNAIAPGLTATEAtaYVPA 199
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 512960259 240 -------ATKSPEEGAETPIYLA-----LLPPDSRGPHGQ 267
Cdd:PRK12939 200 derhayyLKGRALERLQVPDDVAgavlfLLSDAARFVTGQ 239
fabG PRK05653
3-oxoacyl-ACP reductase FabG;
5-235 1.59e-30

3-oxoacyl-ACP reductase FabG;


Pssm-ID: 235546 [Multi-domain]  Cd Length: 246  Bit Score: 114.49  E-value: 1.59e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK05653   5 GKTALVTGASRGIGRAIALRLAAD--GaKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIafkmADPTPFH-IQAE---VTIKTNFYGTRDVCTELLP-LIKPG-GRVVNVSSMtslmalkgcspelqqk 157
Cdd:PRK05653  83 LDILVNNAGI----TRDALLPrMSEEdwdRVIDVNLTGTFNVVRAALPpMIKARyGRIVNISSV---------------- 142
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 158 frsetiteeelVGLMnkfvedtknkvhekeGWP-SSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDM 235
Cdd:PRK05653 143 -----------SGVT---------------GNPgQTNYSAAKAGVIGFT----KALALELASRGITVNAVAPGFIDTDM 191
adh_short_C2 pfam13561
Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) ...
12-236 3.67e-28

Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) reductases.


Pssm-ID: 433310 [Multi-domain]  Cd Length: 236  Bit Score: 107.90  E-value: 3.67e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   12 GA--NKGIGFAITRDLCRRfsG-DVVLTARDEArGRAAVQQLqAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVLI 88
Cdd:pfam13561   1 GAanESGIGWAIARALAEE--GaEVVLTDLNEA-LAKRVEEL-AEELGAAVLPCDVTDEEQVEALVAAAVEKFGRLDILV 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   89 NNAGIAFKMAdpTPFH-IQAE---VTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTSLMALKGcspelqqkfrsetit 164
Cdd:pfam13561  77 NNAGFAPKLK--GPFLdTSREdfdRALDVNLYSLFLLAKAALPLMKEGGSIVNLSSIGAERVVPN--------------- 139
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  165 eeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTDMA 236
Cdd:pfam13561 140 --------------------------YNAYGAAKAALEALTRYLAVEL----GPRGIRVNAISPGPIKTLAA 181
carb_red_sniffer_like_SDR_c cd05325
carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl ...
8-249 1.70e-27

carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187586 [Multi-domain]  Cd Length: 233  Bit Score: 106.23  E-value: 1.70e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRFSGDVVLTARDeARGRAAVQQLQAEGLSPRFHQLDIDDL--QSIRAVRDFLRKeyGGLD 85
Cdd:cd05325    1 VLITGASRGIGLELVRQLLARGNNTVIATCRD-PSAATELAALGASHSRLHILELDVTDEiaESAEAVAERLGD--AGLD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKM-ADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIKPGGR--VVNVSS-MTSLmalkgcspelqqkfrse 161
Cdd:cd05325   78 VLINNAGILHSYgPASEVDSEDLLEVFQVNVLGPLLLTQAFLPLLLKGARakIINISSrVGSI----------------- 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 162 titeeelvGLMNKFvedtknkvhekegwPSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMAGPSA- 240
Cdd:cd05325  141 --------GDNTSG--------------GWYSYRASKAALNMLT----KSLAVELKRDGITVVSLHPGWVRTDMGGPFAk 194
                        250
                 ....*....|..
gi 512960259 241 ---TKSPEEGAE 249
Cdd:cd05325  195 nkgPITPEESVA 206
17beta-HSD-like_SDR_c cd05374
17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; 17beta-hydroxysteroid ...
6-152 1.84e-26

17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187632 [Multi-domain]  Cd Length: 248  Bit Score: 103.85  E-value: 1.84e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsGDVVL-TARDeargRAAVQQLQAEgLSPRFH--QLDIDDLQSIRAVRDFLRKEYG 82
Cdd:cd05374    1 KVVLITGCSSGIGLALALALAAQ--GYRVIaTARN----PDKLESLGEL-LNDNLEvlELDVTDEESIKAAVKEVIERFG 73
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  83 GLDVLINNAGIAFKMadptPFhiqAEVTIK-------TNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKGCSP 152
Cdd:cd05374   74 RIDVLVNNAGYGLFG----PL---EETSIEevrelfeVNVFGPLRVTRAFLPLMRkqGSGRIVNVSSVAGLVPTPFLGP 145
FabG-like PRK07231
SDR family oxidoreductase;
6-236 2.72e-26

SDR family oxidoreductase;


Pssm-ID: 235975 [Multi-domain]  Cd Length: 251  Bit Score: 103.37  E-value: 2.72e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSpRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07231   6 KVAIVTGASSGIGEGIARRFAAE-GARVVVTDRNEEAAERVAAEILAGGRA-IAVAADVSDEADVEAAVAAALERFGSVD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFK---MADPTP--FHIQAEVTIKTNFYGTRdvctELLPLIKP--GGRVVNVSSMTSLMAlkgcSPELqqkf 158
Cdd:PRK07231  84 ILVNNAGTTHRngpLLDVDEaeFDRIFAVNVKSPYLWTQ----AAVPAMRGegGGAIVNVASTAGLRP----RPGL---- 151
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259 159 rsetiteeelvglmnkfvedtknkvhekeGWpssaYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTDMA 236
Cdd:PRK07231 152 -----------------------------GW----YNASKGAVITLTKALAAEL----GPDKIRVNAVAPVVVETGLL 192
fabG PRK12825
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
1-252 3.43e-26

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237218 [Multi-domain]  Cd Length: 249  Bit Score: 103.02  E-value: 3.43e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAITRDLCRrfSG-DVVLTAR-DEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLR 78
Cdd:PRK12825   2 GSLMGRVALVTGAARGLGRAIALRLAR--AGaDVVVHYRsDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  79 KEYGGLDVLINNAGIAF--KMADPTP--FHIQAEVTIKTNFYGTRDVcteLLPLIKPG-GRVVNVSSMTSLMalkgcspe 153
Cdd:PRK12825  80 ERFGRIDILVNNAGIFEdkPLADMSDdeWDEVIDVNLSGVFHLLRAV---VPPMRKQRgGRIVNISSVAGLP-------- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 154 lqqkfrsetiteeelvglmnkfvedtknkvhekeGWP-SSAYGVSKIGVTVLSRIHARKLSeERGgdkILLNACCPGWVR 232
Cdd:PRK12825 149 ----------------------------------GWPgRSNYAAAKAGLVGLTKALARELA-EYG---ITVNMVAPGDID 190
                        250       260
                 ....*....|....*....|.
gi 512960259 233 TDMAGPS-ATKSPEEGAETPI 252
Cdd:PRK12825 191 TDMKEATiEEAREAKDAETPL 211
PRK12826 PRK12826
SDR family oxidoreductase;
5-238 4.22e-26

SDR family oxidoreductase;


Pssm-ID: 183775 [Multi-domain]  Cd Length: 251  Bit Score: 102.69  E-value: 4.22e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK12826   6 GRVALVTGAARGIGRAIAVRLAAD-GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIA----FKMADPTpfhiQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSL-MALKGcspelqqk 157
Cdd:PRK12826  85 DILVANAGIFpltpFAEMDDE----QWERVIDVNLTGTFLLTQAALPALIRagGGRIVLTSSVAGPrVGYPG-------- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 frsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTDMAG 237
Cdd:PRK12826 153 ---------------------------------LAHYAASKAGLVGF----TRALALELAARNITVNSVHPGGVDTPMAG 195

                 .
gi 512960259 238 P 238
Cdd:PRK12826 196 N 196
DltE COG3967
Short-chain dehydrogenase involved in D-alanine esterification of teichoic acids [Cell wall ...
9-140 2.04e-25

Short-chain dehydrogenase involved in D-alanine esterification of teichoic acids [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 443167 [Multi-domain]  Cd Length: 246  Bit Score: 101.01  E-value: 2.04e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRdlcrRFSG---DVVLTARDEARGRAAVQQLqaeglsPRFH--QLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:COG3967    9 LITGGTSGIGLALAK----RLHArgnTVIITGRREEKLEEAAAAN------PGLHtiVLDVADPASIAALAEQVTAEFPD 78
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  84 LDVLINNAGI--AFKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSS 140
Cdd:COG3967   79 LNVLINNAGImrAEDLLDEAEDLADAEREITTNLLGPIRLTAAFLPHLKaqPEAAIVNVSS 139
PRK12937 PRK12937
short chain dehydrogenase; Provisional
1-269 3.34e-25

short chain dehydrogenase; Provisional


Pssm-ID: 171821 [Multi-domain]  Cd Length: 245  Bit Score: 100.20  E-value: 3.34e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKE 80
Cdd:PRK12937   1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  81 YGGLDVLINNAGIaFKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSsmTSLMALKgcspelqqkfr 159
Cdd:PRK12937  81 FGRIDVLVNNAGV-MPLGTIADFDLEDfDRTIATNLRGAFVVLREAARHLGQGGRIINLS--TSVIALP----------- 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 160 setiteeelvglmnkfvedtknkvhekegWPS-SAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDM--A 236
Cdd:PRK12937 147 -----------------------------LPGyGPYAASKAAVEGLVHV----LANELRGRGITVNAVAPGPVATELffN 193
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 512960259 237 GPSATK--------------SPEEGAETPIYLAllppdsrGPHGQFV 269
Cdd:PRK12937 194 GKSAEQidqlaglaplerlgTPEEIAAAVAFLA-------GPDGAWV 233
fabG PRK05557
3-ketoacyl-(acyl-carrier-protein) reductase; Validated
6-255 3.56e-25

3-ketoacyl-(acyl-carrier-protein) reductase; Validated


Pssm-ID: 235500 [Multi-domain]  Cd Length: 248  Bit Score: 100.27  E-value: 3.56e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK05557   6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGGVD 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA-------FKMADptpFhiqaEVTIKTNFYGTRDVCTELLPLI--KPGGRVVNVSSMTSLMAlkgcspelqq 156
Cdd:PRK05557  86 ILVNNAGITrdnllmrMKEED---W----DRVIDTNLTGVFNLTKAVARPMmkQRSGRIINISSVVGLMG---------- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 157 kfrsetiteeeLVGLMNkfvedtknkvhekegwpssaYGVSKIGVTVLSRIHARKLSeERGgdkILLNACCPGWVRTDM- 235
Cdd:PRK05557 149 -----------NPGQAN--------------------YAASKAGVIGFTKSLARELA-SRG---ITVNAVAPGFIETDMt 193
                        250       260       270
                 ....*....|....*....|....*....|....
gi 512960259 236 -AGPSATK-------------SPEEGAETPIYLA 255
Cdd:PRK05557 194 dALPEDVKeailaqiplgrlgQPEEIASAVAFLA 227
HBDH_SDR_c cd08940
d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; DHBDH, an NAD+ -dependent enzyme, ...
6-235 8.16e-24

d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187644 [Multi-domain]  Cd Length: 258  Bit Score: 96.75  E-value: 8.16e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTA-RDEARGRAAVQQLQAE-GLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:cd08940    3 KVALVTGSTSGIGLGIARALAAA-GANIVLNGfGDAAEIEAVRAGLAAKhGVKVLYHGADLSKPAAIEDMVAYAQRQFGG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAFkMADPTPFHI-QAEVTIKTN----FYGTRDVctelLPLIKPG--GRVVNVSSMTSlmalkgcspelqq 156
Cdd:cd08940   82 VDILVNNAGIQH-VAPIEDFPTeKWDAIIALNlsavFHTTRLA----LPHMKKQgwGRIINIASVHG------------- 143
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 157 kfrsetiteeeLVGLMNKfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARklseERGGDKILLNACCPGWVRTDM 235
Cdd:cd08940  144 -----------LVASANK-----------------SAYVAAKHGVVGLTKVVAL----ETAGTGVTCNAICPGWVLTPL 190
PRK06484 PRK06484
short chain dehydrogenase; Validated
5-255 1.39e-23

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 99.54  E-value: 1.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAItrdlCRRFS--GDVVLTA-RDEARGRAAVQQLqaeGLSPRFHQLDIDDLQSIRAVRDFLRKEY 81
Cdd:PRK06484   5 SRVVLVTGAAGGIGRAA----CQRFAraGDQVVVAdRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHREF 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 GGLDVLINNAGI----AFKMADPTPFHIQAEVTIktNFYGTRDVCTELLPLI---KPGGRVVNVSSMTSLMALKGcspel 154
Cdd:PRK06484  78 GRIDVLVNNAGVtdptMTATLDTTLEEFARLQAI--NLTGAYLVAREALRLMieqGHGAAIVNVASGAGLVALPK----- 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 155 qqkfrsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTD 234
Cdd:PRK06484 151 ------------------------------------RTAYSASKAAVISLT----RSLACEWAAKGIRVNAVLPGYVRTQ 190
                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 512960259 235 M------AG---PSATKS---------PEEGAETPIYLA 255
Cdd:PRK06484 191 MvaelerAGkldPSAVRSriplgrlgrPEEIAEAVFFLA 229
Ga5DH-like_SDR_c cd05347
gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Ga5DH catalyzes the NADP-dependent ...
6-239 4.82e-23

gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187605 [Multi-domain]  Cd Length: 248  Bit Score: 94.73  E-value: 4.82e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLcRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05347    6 KVALVTGASRGIGFGIASGL-AEAGANIVINSRNEEKAEEAQQLIEKEGVEATAFTCDVSDEEAIKAAVEAIEEDFGKID 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA-------FKMADptpFHIQAEVTIKTNFYGTRDVCTELLPliKPGGRVVNVSSMTSlmalkgcspelqqkf 158
Cdd:cd05347   85 ILVNNAGIIrrhpaeeFPEAE---WRDVIDVNLNGVFFVSQAVARHMIK--QGHGKIINICSLLS--------------- 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 159 rsetiteeELVGLmnkfvedtknkvhekegwPSSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDMAGP 238
Cdd:cd05347  145 --------ELGGP------------------PVPAYAASKGGVAGLTKA----LATEWARHGIQVNAIAPGYFATEMTEA 194

                 .
gi 512960259 239 S 239
Cdd:cd05347  195 V 195
PRK06914 PRK06914
SDR family oxidoreductase;
6-165 4.83e-23

SDR family oxidoreductase;


Pssm-ID: 180744 [Multi-domain]  Cd Length: 280  Bit Score: 95.09  E-value: 4.83e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFH--QLDIDDLQSIRAVRDFLrKEYGG 83
Cdd:PRK06914   4 KIAIVTGASSGFGLLTTLELAKK-GYLVIATMRNPEKQENLLSQATQLNLQQNIKvqQLDVTDQNSIHNFQLVL-KEIGR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAFK-MADPTP---FHIQAEvtikTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMALKGCSPELQQK 157
Cdd:PRK06914  82 IDLLVNNAGYANGgFVEEIPveeYRKQFE----TNVFGAISVTQAVLPYMRKqkSGKIINISSISGRVGFPGLSPYVSSK 157

                 ....*...
gi 512960259 158 FRSETITE 165
Cdd:PRK06914 158 YALEGFSE 165
BKR_SDR_c cd05333
beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; ...
6-235 9.82e-23

beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187594 [Multi-domain]  Cd Length: 240  Bit Score: 93.38  E-value: 9.82e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05333    1 KVALVTGASRGIGRAIALRLAAE-GAKVAVTDRSEEAAAETVEEIKALGGNAAALEADVSDREAVEALVEKVEAEFGPVD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI-----AFKMADPtpfhiQAEVTIKTN----FYGTRDVcteLLPLIKPG-GRVVNVSSmtslmalkgcspelq 155
Cdd:cd05333   80 ILVNNAGItrdnlLMRMSEE-----DWDAVINVNltgvFNVTQAV---IRAMIKRRsGRIINISS--------------- 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeeLVGLMnkfvedtknkvhekeGWPSSA-YGVSKIGVTVLSRIHARKLSeERGgdkILLNACCPGWVRTD 234
Cdd:cd05333  137 ------------VVGLI---------------GNPGQAnYAASKAGVIGFTKSLAKELA-SRG---ITVNAVAPGFIDTD 185

                 .
gi 512960259 235 M 235
Cdd:cd05333  186 M 186
THN_reductase-like_SDR_c cd05362
tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; 1,3,6, ...
6-235 7.26e-22

tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187620 [Multi-domain]  Cd Length: 243  Bit Score: 91.18  E-value: 7.26e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05362    4 KVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGKAIAVQADVSDPSQVARLFDAAEKAFGGVD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFK--MADPTP--FHIQAEVTIKTNFYGTRdvctELLPLIKPGGRVVNVSSMTSLMALKGcspelqqkfrse 161
Cdd:cd05362   84 ILVNNAGVMLKkpIAETSEeeFDRMFTVNTKGAFFVLQ----EAAKRLRDGGRIINISSSLTAAYTPN------------ 147
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259 162 titeeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDM 235
Cdd:cd05362  148 -----------------------------YGAYAGSKAAVEAFTRV----LAKELGGRGITVNAVAPGPVDTDM 188
PRK12745 PRK12745
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-242 1.60e-21

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237188 [Multi-domain]  Cd Length: 256  Bit Score: 90.79  E-value: 1.60e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSG-DVVLTA-RDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK12745   3 PVALVTGGRRGIGLGIARALAA--AGfDLAINDrPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAFK----MADPTP--FHIQAEVTIKTNFYGTRDVCTELL----PLIKPGGRVVNVSSMTSLMAlkgcSPE 153
Cdd:PRK12745  81 IDCLVNNAGVGVKvrgdLLDLTPesFDRVLAINLRGPFFLTQAVAKRMLaqpePEELPHRSIVFVSSVNAIMV----SPN 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 154 lqqkfRSEtiteeelvglmnkfvedtknkvhekegwpssaYGVSKIGVTVLSRIHARKLSEERggdkILLNACCPGWVRT 233
Cdd:PRK12745 157 -----RGE--------------------------------YCISKAGLSMAAQLFAARLAEEG----IGVYEVRPGLIKT 195

                 ....*....
gi 512960259 234 DMAGPSATK 242
Cdd:PRK12745 196 DMTAPVTAK 204
3beta-17beta-HSD_like_SDR_c cd05341
3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; This subgroup includes ...
6-235 2.18e-21

3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187600 [Multi-domain]  Cd Length: 247  Bit Score: 90.13  E-value: 2.18e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLqaeGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05341    6 KVAIVTGGARGLGLAHARLLVAE-GAKVVLSDILDEEGQAAAAEL---GDAARFFHLDVTDEDGWTAVVDTAREAFGRLD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAF--KMADPTPFHIQAEVTIKTN--FYGTRDVctellplIKP-----GGRVVNVSSMTSLMALKGCspelqq 156
Cdd:cd05341   82 VLVNNAGILTggTVETTTLEEWRRLLDINLTgvFLGTRAV-------IPPmkeagGGSIINMSSIEGLVGDPAL------ 148
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 157 kfrsetiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLSEErgGDKILLNACCPGWVRTDM 235
Cdd:cd05341  149 -----------------------------------AAYNASKGAVRGLTKSAALECATQ--GYGIRVNSVHPGYIYTPM 190
PRK12429 PRK12429
3-hydroxybutyrate dehydrogenase; Provisional
6-233 2.48e-21

3-hydroxybutyrate dehydrogenase; Provisional


Pssm-ID: 237100 [Multi-domain]  Cd Length: 258  Bit Score: 90.33  E-value: 2.48e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK12429   5 KVALVTGAASGIGLEIALALAKE-GAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI-------AFKMADptpfhiqAEVTIKTN----FYGTRDVctelLPLIKP--GGRVVNVSSMTSLMALKGCSP 152
Cdd:PRK12429  84 ILVNNAGIqhvapieDFPTEK-------WKKMIAIMldgaFLTTKAA----LPIMKAqgGGRIINMASVHGLVGSAGKAA 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 153 ELQQKfrsetiteEELVGLmnkfvedtkNKVHEKEGWPSsaygvskiGVTVlsriharklseerggdkillNACCPGWVR 232
Cdd:PRK12429 153 YVSAK--------HGLIGL---------TKVVALEGATH--------GVTV--------------------NAICPGYVD 187

                 .
gi 512960259 233 T 233
Cdd:PRK12429 188 T 188
ADH_SDR_c_like cd05323
insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs; This subgroup contains ...
6-252 3.06e-21

insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs; This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187584 [Multi-domain]  Cd Length: 244  Bit Score: 89.67  E-value: 3.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05323    1 KVAIITGGASGIGLATAKLLLKK-GAKVAILDRNENPGAAAELQAINPKVKATFVQCDVTSWEQLAAAFKKAIEKFGRVD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA-----FKMADPTPfhiQAEVTIKTNFYGTRDVCTELLPLIK-----PGGRVVNVSSMTSLMALKGCspelq 155
Cdd:cd05323   80 ILINNAGILdeksyLFAGKLPP---PWEKTIDVNLTGVINTTYLALHYMDknkggKGGVIVNIGSVAGLYPAPQF----- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLSEERGgdkILLNACCPGWVRTDM 235
Cdd:cd05323  152 ------------------------------------PVYSASKHGVVGFTRSLADLLEYKTG---VRVNAICPGFTNTPL 192
                        250
                 ....*....|....*..
gi 512960259 236 AGPSATKSPEEGAETPI 252
Cdd:cd05323  193 LPDLVAKEAEMLPSAPT 209
SDR_c2 cd05370
classical (c) SDR, subgroup 2; Short-chain dehydrogenases/reductases (SDRs, aka ...
1-140 3.38e-21

classical (c) SDR, subgroup 2; Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187628 [Multi-domain]  Cd Length: 228  Bit Score: 89.29  E-value: 3.38e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAITRDLCRRFSgDVVLTARDEARgraaVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKE 80
Cdd:cd05370    1 MKLTGNTVLITGGTSGIGLALARKFLEAGN-TVIITGRREER----LAEAKKELPNIHTIVLDVGDAESVEALAEALLSE 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  81 YGGLDVLINNAGIA--FKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSS 140
Cdd:cd05370   76 YPNLDILINNAGIQrpIDLRDPASDLDKADTEIDTNLIGPIRLIKAFLPHLKkqPEATIVNVSS 139
PRK07326 PRK07326
SDR family oxidoreductase;
1-149 3.50e-21

SDR family oxidoreductase;


Pssm-ID: 235990 [Multi-domain]  Cd Length: 237  Bit Score: 89.30  E-value: 3.50e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGlspRFHQL--DIDDLQSIRAVRDFLR 78
Cdd:PRK07326   2 MSLKGKVALITGGSKGIGFAIAEALLAE-GYKVAITARDQKELEEAAAELNNKG---NVLGLaaDVRDEADVQRAVDAIV 77
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  79 KEYGGLDVLINNAGIA-FK-MADPTPFHIQAevTIKTNFYGTRDVCTELLP-LIKPGGRVVNVSSMTSLMALKG 149
Cdd:PRK07326  78 AAFGGLDVLIANAGVGhFApVEELTPEEWRL--VIDTNLTGAFYTIKAAVPaLKRGGGYIINISSLAGTNFFAG 149
BKR_1_SDR_c cd05337
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) ...
6-252 3.83e-21

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR; This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187596 [Multi-domain]  Cd Length: 255  Bit Score: 89.83  E-value: 3.83e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05337    2 PVAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRRAIYFQADIGELSDHEALLDQAWEDFGRLD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFK----MADPTP--FHIQAEVTIKTNFYGTRDVCTELL----PLIKPGGRVVNVSSMTSLMAlkgcSPElq 155
Cdd:cd05337   82 CLVNNAGIAVRprgdLLDLTEdsFDRLIAINLRGPFFLTQAVARRMVeqpdRFDGPHRSIIFVTSINAYLV----SPN-- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfRSEtiteeelvglmnkfvedtknkvhekegwpssaYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTDM 235
Cdd:cd05337  156 ---RGE--------------------------------YCISKAGLSMATRLLAYRLADE----GIAVHEIRPGLIHTDM 196
                        250
                 ....*....|....*....
gi 512960259 236 AGPSATKSPEEGAE--TPI 252
Cdd:cd05337  197 TAPVKEKYDELIAAglVPI 215
SDR_c4 cd08929
classical (c) SDR, subgroup 4; This subgroup has a canonical active site tetrad and a typical ...
8-149 4.40e-21

classical (c) SDR, subgroup 4; This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187634 [Multi-domain]  Cd Length: 226  Bit Score: 88.72  E-value: 4.40e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRFSGdVVLTARDEARGRAAVQQLQaeglsPRFHQL--DIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd08929    3 ALVTGASRGIGEATARLLHAEGYR-VGICARDEARLAAAAAQEL-----EGVLGLagDVRDEADVRRAVDAMEEAFGGLD 76
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259  86 VLINNAGIAF--KMADPTPFHIQAEV--TIKTNFYGTRDVCTELLPliKPGGRVVNVSSMTSLMALKG 149
Cdd:cd08929   77 ALVNNAGVGVmkPVEELTPEEWRLVLdtNLTGAFYCIHKAAPALLR--RGGGTIVNVGSLAGKNAFKG 142
PRK06197 PRK06197
short chain dehydrogenase; Provisional
6-268 4.58e-21

short chain dehydrogenase; Provisional


Pssm-ID: 235737 [Multi-domain]  Cd Length: 306  Bit Score: 90.47  E-value: 4.58e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAE--GLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK06197  17 RVAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDKGKAAAARITAAtpGADVTLQELDLTSLASVRAAADALRAAYPR 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIafkMAdpTPFHIQA---EVTIKTNFYG----TRDVCTELLPLikPGGRVVNVSSmtslmalkgcspeLQQ 156
Cdd:PRK06197  96 IDLLINNAGV---MY--TPKQTTAdgfELQFGTNHLGhfalTGLLLDRLLPV--PGSRVVTVSS-------------GGH 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 157 KFRSEtITEEELVGlmnkfvEDTKNKVhekegwpsSAYGVSKIGVTVLSRIHARKLSeERGGDKILLnACCPGWVRTDMA 236
Cdd:PRK06197 156 RIRAA-IHFDDLQW------ERRYNRV--------AAYGQSKLANLLFTYELQRRLA-AAGATTIAV-AAHPGVSNTELA 218
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 512960259 237 --------------GPSATKSPEEGAeTPIYLALLPPDSRGphGQF 268
Cdd:PRK06197 219 rnlpralrpvatvlAPLLAQSPEMGA-LPTLRAATDPAVRG--GQY 261
SDR_c7 cd05354
classical (c) SDR, subgroup 7; These proteins are members of the classical SDR family, with a ...
6-170 7.27e-21

classical (c) SDR, subgroup 7; These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187612 [Multi-domain]  Cd Length: 235  Bit Score: 88.62  E-value: 7.27e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEargrAAVQQLQAEGLSpRFH--QLDIDDLQSIRAVRDFLRKeygg 83
Cdd:cd05354    4 KTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDP----GSAAHLVAKYGD-KVVplRLDVTDPESIKAAAAQAKD---- 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIaFKMAdpTPFHIQAEVTIK----TNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKGCSPELQQK 157
Cdd:cd05354   75 VDVVINNAGV-LKPA--TLLEEGALEALKqemdVNVFGLLRLAQAFAPVLKanGGGAIVNLNSVASLKNFPAMGTYSASK 151
                        170
                 ....*....|....*.
gi 512960259 158 FRSETITE---EELVG 170
Cdd:cd05354  152 SAAYSLTQglrAELAA 167
PRK07774 PRK07774
SDR family oxidoreductase;
5-246 3.89e-20

SDR family oxidoreductase;


Pssm-ID: 236094 [Multi-domain]  Cd Length: 250  Bit Score: 86.72  E-value: 3.89e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK07774   6 DKVAIVTGAAGGIGQAYAEALARE-GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFKMadPTPFHIQAEVT-----IKTNFYGTRDVCTELLPLI--KPGGRVVNVSSMTSLMalkgcspelqqk 157
Cdd:PRK07774  85 DYLVNNAAIYGGM--KLDLLITVPWDyykkfMSVNLDGALVCTRAVYKHMakRGGGAIVNQSSTAAWL------------ 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 frsetiteeelvglmnkfvedtknkvhekegwPSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMAg 237
Cdd:PRK07774 151 --------------------------------YSNFYGLAKVGLNGLT----QQLARELGGMNIRVNAIAPGPIDTEAT- 193

                 ....*....
gi 512960259 238 psATKSPEE 246
Cdd:PRK07774 194 --RTVTPKE 200
PRK08264 PRK08264
SDR family oxidoreductase;
6-145 9.28e-20

SDR family oxidoreductase;


Pssm-ID: 181335 [Multi-domain]  Cd Length: 238  Bit Score: 85.33  E-value: 9.28e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARgraavqqlqAEGLSPRFH--QLDIDDLQSIRAVRDFLrkeyGG 83
Cdd:PRK08264   7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES---------VTDLGPRVVplQLDVTDPASVAAAAEAA----SD 73
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512960259  84 LDVLINNAGIAFK---MADPTPFHIQAEvtIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLM 145
Cdd:PRK08264  74 VTILVNNAGIFRTgslLLEGDEDALRAE--METNYFGPLAMARAFAPVLAanGGGAIVNVLSVLSWV 138
PRK09242 PRK09242
SDR family oxidoreductase;
6-238 1.40e-19

SDR family oxidoreductase;


Pssm-ID: 181721 [Multi-domain]  Cd Length: 257  Bit Score: 85.57  E-value: 1.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQL--DIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK09242  10 QTALITGASKGIGLAIAREFLG-LGADVLIVARDADALAQARDELAEEFPEREVHGLaaDVSDDEDRRAILDWVEDHWDG 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAG--IAFKMADPTPFHIQAevTIKTNFYGTRDVCTELLPLIKPGG--RVVNVSSMTSLmalkgcspelqqkfr 159
Cdd:PRK09242  89 LHILVNNAGgnIRKAAIDYTEDEWRG--IFETNLFSAFELSRYAHPLLKQHAssAIVNIGSVSGL--------------- 151
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 160 setiteeelvglmnkfvedtknkVHEKEGWPssaYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMAGP 238
Cdd:PRK09242 152 -----------------------THVRSGAP---YGMTKAALLQMT----RNLAVEWAEDGIRVNAVAPWYIRTPLTSG 200
PRK06484 PRK06484
short chain dehydrogenase; Validated
5-233 1.91e-19

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 87.60  E-value: 1.91e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRdlcrRFS--GDVVLTARDEARGRAAVQQLqAEGLSPRFhQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK06484 269 PRVVAITGGARGIGRAVAD----RFAaaGDRLLIIDRDAEGAKKLAEA-LGDEHLSV-QADITDEAAVESAFAQIQARWG 342
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGIAFKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTSLMALKgcspelqqkfrse 161
Cdd:PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDfTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALP------------- 409
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259 162 titeeelvglmnkfvedtknkvhekegwPSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRT 233
Cdd:PRK06484 410 ----------------------------PRNAYCASKAAVTMLS----RSLACEWAPAGIRVNTVAPGYIET 449
HetN_like_SDR_c cd08932
HetN oxidoreductase-like, classical (c) SDR; This subgroup includes Anabaena sp. strain PCC ...
6-236 2.56e-19

HetN oxidoreductase-like, classical (c) SDR; This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212493 [Multi-domain]  Cd Length: 223  Bit Score: 83.95  E-value: 2.56e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDearGRAAVQQLQAEGlSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd08932    1 KVALVTGASRGIGIEIARALARD-GYRVSLGLRN---PEDLAALSASGG-DVEAVPYDARDPEDARALVDALRDRFGRID 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIafkmADPTPF--------HIQAEVTIKTNFYGTRDvcteLLP-LIKPG-GRVVNVSSMTSLMALKGcspelq 155
Cdd:cd08932   76 VLVHNAGI----GRPTTLregsdaelEAHFSINVIAPAELTRA----LLPaLREAGsGRVVFLNSLSGKRVLAG------ 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLSEerggDKILLNACCPGWVRTDM 235
Cdd:cd08932  142 -----------------------------------NAGYSASKFALRALAHALRQEGWD----HGVRVSAVCPGFVDTPM 182

                 .
gi 512960259 236 A 236
Cdd:cd08932  183 A 183
retinol-DH_like_SDR_c cd09807
retinol dehydrogenases (retinol-DHs), classical (c) SDRs; Classical SDR-like subgroup ...
6-258 6.53e-19

retinol dehydrogenases (retinol-DHs), classical (c) SDRs; Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212495 [Multi-domain]  Cd Length: 274  Bit Score: 84.06  E-value: 6.53e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRF--HQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:cd09807    2 KTVIITGANTGIGKETARELARR-GARVIMACRDMAKCEEAAAEIRRDTLNHEVivRHLDLASLKSIRAFAAEFLAEEDR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAF--KMADPTPFHIQAEVtiktNFYGTRDVCTELLPLIKPGG--RVVNVSSMTslmalkgcspelqqkfr 159
Cdd:cd09807   81 LDVLINNAGVMRcpYSKTEDGFEMQFGV----NHLGHFLLTNLLLDLLKKSApsRIVNVSSLA----------------- 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 160 setiteeELVGLMNkFVEDTKNKVHEKegwpSSAYGVSKIGVTVLSRIHARKLSeergGDKILLNACCPGWVRTDMAGPS 239
Cdd:cd09807  140 -------HKAGKIN-FDDLNSEKSYNT----GFAYCQSKLANVLFTRELARRLQ----GTGVTVNALHPGVVRTELGRHT 203
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 512960259 240 AT-----------------KSPEEGAETPIYLALLP 258
Cdd:cd09807  204 GIhhlflstllnplfwpfvKTPREGAQTSIYLALAE 239
PRK07454 PRK07454
SDR family oxidoreductase;
5-260 7.01e-19

SDR family oxidoreductase;


Pssm-ID: 180984 [Multi-domain]  Cd Length: 241  Bit Score: 83.08  E-value: 7.01e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRrfSG-DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK07454   6 MPRALITGASSGIGKATALAFAK--AGwDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAFK--MADpTPFHiQAEVTIKTNFYGTRDVCTELLPLI--KPGGRVVNVSSMTSlmalkgcspelQQKFr 159
Cdd:PRK07454  84 PDVLINNAGMAYTgpLLE-MPLS-DWQWVIQLNLTSVFQCCSAVLPGMraRGGGLIINVSSIAA-----------RNAF- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 160 setiteeelvglmnkfvedtknkvhekEGWpsSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRT-----D 234
Cdd:PRK07454 150 ---------------------------PQW--GAYCVSKAALAAFTKC----LAEEERSHGIRVCTITLGAVNTplwdtE 196
                        250       260       270
                 ....*....|....*....|....*....|
gi 512960259 235 MAGP----SATKSPEEGAETPIYLALLPPD 260
Cdd:PRK07454 197 TVQAdfdrSAMLSPEQVAQTILHLAQLPPS 226
BKR_like_SDR_like cd05344
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; This subgroup ...
6-234 7.81e-19

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187602 [Multi-domain]  Cd Length: 253  Bit Score: 83.09  E-value: 7.81e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSgDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05344    2 KVALVTAASSGIGLAIARALAREGA-RVAICARNRENLERAASELRAGGAGVLAVVADLTDPEDIDRLVEKAGDAFGRVD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGiafkMADPTPFhiqAEVT-------IKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLmalkgcSPElqq 156
Cdd:cd05344   81 ILVNNAG----GPPPGPF---AELTdedwleaFDLKLLSVIRIVRAVLPGMKErgWGRIVNISSLTVK------EPE--- 144
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259 157 kfrsetiteeelvglmnkfvedtknkvhekEGWPSSayGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTD 234
Cdd:cd05344  145 ------------------------------PNLVLS--NVARAGLIGLVKTLSREL----APDGVTVNSVLPGYIDTE 186
SDR_c12 cd08944
classical (c) SDR, subgroup 12; These are classical SDRs, with the canonical active site ...
6-235 9.62e-19

classical (c) SDR, subgroup 12; These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187648 [Multi-domain]  Cd Length: 246  Bit Score: 82.92  E-value: 9.62e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRfhqLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd08944    4 KVAIVTGAGAGIGAACAARLARE-GARVVVADIDGGAAQAVVAQIAGGALALR---VDVTDEQQVAALFERAVEEFGGLD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAfkMADPTPFHIQAEV---TIKTNFYGTRDVCTELLPLI--KPGGRVVNVSSMTSLMALKGcspelqqkfrs 160
Cdd:cd08944   80 LLVNNAGAM--HLTPAIIDTDLAVwdqTMAINLRGTFLCCRHAAPRMiaRGGGSIVNLSSIAGQSGDPG----------- 146
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDM 235
Cdd:cd08944  147 ------------------------------YGAYGASKAAIRNLTRT----LAAELRHAGIRCNALAPGLIDTPL 187
PRK06138 PRK06138
SDR family oxidoreductase;
6-255 1.61e-18

SDR family oxidoreductase;


Pssm-ID: 235712 [Multi-domain]  Cd Length: 252  Bit Score: 82.51  E-value: 1.61e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEArGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06138   6 RVAIVTGAGSGIGRATAKLFARE-GARVVVADRDAE-AAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAG--IAFKMADPTPFHIQAevTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMALKGcspelqqkfrse 161
Cdd:PRK06138  84 VLVNNAGfgCGGTVVTTDEADWDA--VMRVNVGGVFLWAKYAIPIMQRqgGGSIVNTASQLALAGGRG------------ 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 162 titeeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARklseERGGDKILLNACCPGWVRTDM------ 235
Cdd:PRK06138 150 -----------------------------RAAYVASKGAIASLTRAMAL----DHATDGIRVNAVAPGTIDTPYfrrifa 196
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 512960259 236 --AGPSATKS-------------PEEGAETPIYLA 255
Cdd:PRK06138 197 rhADPEALREalrarhpmnrfgtAEEVAQAALFLA 231
KDSR-like_SDR_c cd08939
3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR; These ...
6-152 1.95e-18

3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR; These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187643 [Multi-domain]  Cd Length: 239  Bit Score: 81.92  E-value: 1.95e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSP----RFHQLDIDDLQSIRAVRDFLRKEY 81
Cdd:cd08939    2 KHVLITGGSSGIGKALAKELVKE-GANVIIVARSESKLEEAVEEIEAEANASgqkvSYISADLSDYEEVEQAFAQAVEKG 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512960259  82 GGLDVLINNAGIA----FKMADPTPFHIQaevtIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMALKGCSP 152
Cdd:cd08939   81 GPPDLVVNCAGISipglFEDLTAEEFERG----MDVNYFGSLNVAHAVLPLMKeqRPGHIVFVSSQAALVGIYGYSA 153
PRK07523 PRK07523
gluconate 5-dehydrogenase; Provisional
6-152 2.18e-18

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 236040 [Multi-domain]  Cd Length: 255  Bit Score: 82.12  E-value: 2.18e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLcRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07523  11 RRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPID 89
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  86 VLINNAGIAFKmadpTP---FHIQA-EVTIKTN----FYGTRDVCTELLPliKPGGRVVNVSSMTSLMALKGCSP 152
Cdd:PRK07523  90 ILVNNAGMQFR----TPledFPADAfERLLRTNissvFYVGQAVARHMIA--RGAGKIINIASVQSALARPGIAP 158
ChcA_like_SDR_c cd05359
1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; This subgroup ...
8-260 3.37e-18

1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187617 [Multi-domain]  Cd Length: 242  Bit Score: 81.24  E-value: 3.37e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfSGDVVLT-ARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDV 86
Cdd:cd05359    1 ALVTGGSRGIGKAIALRLAER-GADVVINyRKSKDAAAEVAAEIEELGGKAVVVRADVSQPQDVEEMFAAVKERFGRLDV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  87 LINNAGI-AFK-MADPTPFHIQAEVTI--KTNFYGTRDVcTELLPLIKpGGRVVNVSSMTSLMALkgcspelqqkfrset 162
Cdd:cd05359   80 LVSNAAAgAFRpLSELTPAHWDAKMNTnlKALVHCAQQA-AKLMRERG-GGRIVAISSLGSIRAL--------------- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 iteeelvglmnkfvedtknkvhekEGWpsSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTDMAG--PSA 240
Cdd:cd05359  143 ------------------------PNY--LAVGTAKAALEAL----VRYLAVELGPRGIRVNAVSPGVIDTDALAhfPNR 192
                        250       260
                 ....*....|....*....|.
gi 512960259 241 TKSPEEGAE-TPIYLALLPPD 260
Cdd:cd05359  193 EDLLEAAAAnTPAGRVGTPQD 213
PRK06124 PRK06124
SDR family oxidoreductase;
6-234 6.83e-18

SDR family oxidoreductase;


Pssm-ID: 235702 [Multi-domain]  Cd Length: 256  Bit Score: 80.91  E-value: 6.83e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSG-DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK06124  12 QVALVTGSARGLGFEIARALAG--AGaHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFK--MADPTPFHIQAevTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMALKGcspelqqkfrs 160
Cdd:PRK06124  90 DILVNNVGARDRrpLAELDDAAIRA--LLETDLVAPILLSRLAAQRMKRqgYGRIIAITSIAGQVARAG----------- 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTD 234
Cdd:PRK06124 157 ------------------------------DAVYPAAKQGLTGLM----RALAAEFGPHGITSNAIAPGYFATE 196
PRK05650 PRK05650
SDR family oxidoreductase;
9-236 9.77e-18

SDR family oxidoreductase;


Pssm-ID: 235545 [Multi-domain]  Cd Length: 270  Bit Score: 80.47  E-value: 9.77e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVLI 88
Cdd:PRK05650   4 MITGAASGLGRAIALRWARE-GWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  89 NNAGIAF--KMADPTPfhIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMalkgcspelqqkfrsetit 164
Cdd:PRK05650  83 NNAGVASggFFEELSL--EDWDWQIAINLMGVVKGCKAFLPLFKRqkSGRIVNIASMAGLM------------------- 141
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259 165 eeeLVGLMnkfvedtknkvhekegwpsSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMA 236
Cdd:PRK05650 142 ---QGPAM-------------------SSYNVAKAGVVALS----ETLLVELADDEIGVHVVCPSFFQTNLL 187
PRK08226 PRK08226
SDR family oxidoreductase UcpA;
6-252 1.08e-17

SDR family oxidoreductase UcpA;


Pssm-ID: 181305 [Multi-domain]  Cd Length: 263  Bit Score: 80.23  E-value: 1.08e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrFSGDVVLTARDEARGRAAvQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK08226   7 KTALITGALQGIGEGIARVFAR-HGANLILLDISPEIEKLA-DELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRID 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA-----FKMADPT-PFHIQaeVTIKtnfyGTRDVCTELLP--LIKPGGRVVNVSSMTSLMalkgcspelqqk 157
Cdd:PRK08226  85 ILVNNAGVCrlgsfLDMSDEDrDFHID--INIK----GVWNVTKAVLPemIARKDGRIVMMSSVTGDM------------ 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 frsetiteeelvglmnkfVEDtknkvhekEGwpSSAYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTDMAG 237
Cdd:PRK08226 147 ------------------VAD--------PG--ETAYALTKAAIVGLTKSLAVEYAQS----GIRVNAICPGYVRTPMAE 194
                        250
                 ....*....|....*
gi 512960259 238 PSATKSPEEGAETPI 252
Cdd:PRK08226 195 SIARQSNPEDPESVL 209
fabG PRK06463
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
5-246 1.11e-17

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 180576 [Multi-domain]  Cd Length: 255  Bit Score: 80.21  E-value: 1.11e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEArgraAVQQLQAEGLSprFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK06463   7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAEN----EAKELREKGVF--TIKCDVGNRDQVKKSKEVVEKEFGRV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFKMadptPF----HIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSL-MALKGcspelqqk 157
Cdd:PRK06463  81 DVLVNNAGIMYLM----PFeefdEEKYNKMIKINLNGAIYTTYEFLPLLKLskNGAIVNIASNAGIgTAAEG-------- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 frsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMAg 237
Cdd:PRK06463 149 ---------------------------------TTFYAITKAGIIILT----RRLAFELGKYGIRVNAVAPGWVETDMT- 190

                 ....*....
gi 512960259 238 pSATKSPEE 246
Cdd:PRK06463 191 -LSGKSQEE 198
11beta-HSD1_like_SDR_c cd05332
11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs; Human ...
6-147 1.29e-17

11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs; Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187593 [Multi-domain]  Cd Length: 257  Bit Score: 79.94  E-value: 1.29e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARGRAAVQQLQAEG-LSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:cd05332    4 KVVIITGASSGIGEELAYHLARL--GaRLVLSARREERLEEVKSECLELGaPSPHVVPLDMSDLEDAEQVVEEALKLFGG 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512960259  84 LDVLINNAGIA-FKMADPTPFHIQAEVtIKTNFYGTRDVCTELLP-LIKPG-GRVVNVSSMTSLMAL 147
Cdd:cd05332   82 LDILINNAGISmRSLFHDTSIDVDRKI-MEVNYFGPVALTKAALPhLIERSqGSIVVVSSIAGKIGV 147
MDH-like_SDR_c cd05352
mannitol dehydrogenase (MDH)-like, classical (c) SDRs; NADP-mannitol dehydrogenase catalyzes ...
6-263 1.31e-17

mannitol dehydrogenase (MDH)-like, classical (c) SDRs; NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187610 [Multi-domain]  Cd Length: 252  Bit Score: 80.07  E-value: 1.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdLCRRFSGDVVLTARDEARGRAAVQQLQAE-GLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:cd05352    9 KVAIVTGGSRGIGLAIAR-ALAEAGADVAIIYNSAPRAEEKAEELAKKyGVKTKAYKCDVSSQESVEKTFKQIQKDFGKI 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAF-KMADPTPFHIQAEVtIKTNFYGTRDVCTELLPLIKPGGR--VVNVSSMTSLMALKgcsPELQqkfrse 161
Cdd:cd05352   88 DILIANAGITVhKPALDYTYEQWNKV-IDVNLNGVFNCAQAAAKIFKKQGKgsLIITASMSGTIVNR---PQPQ------ 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 162 titeeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTDMAGPSAT 241
Cdd:cd05352  158 ------------------------------AAYNASKAAVIHL----AKSLAVEWAKYFIRVNSISPGYIDTDLTDFVDK 203
                        250       260
                 ....*....|....*....|...
gi 512960259 242 K-SPEEGAETPIYLALLPPDSRG 263
Cdd:cd05352  204 ElRKKWESYIPLKRIALPEELVG 226
SPR-like_SDR_c cd05367
sepiapterin reductase (SPR)-like, classical (c) SDRs; Human SPR, a member of the SDR family, ...
7-151 2.32e-17

sepiapterin reductase (SPR)-like, classical (c) SDRs; Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187625 [Multi-domain]  Cd Length: 241  Bit Score: 78.87  E-value: 2.32e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRDLCRR-FSGDVVLTARDEArgraAVQQLQAE---GLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:cd05367    1 VIILTGASRGIGRALAEELLKRgSPSVVVLLARSEE----PLQELKEElrpGLRVTTVKADLSDAAGVEQLLEAIRKLDG 76
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  83 GLDVLINNAGIAFKMADPTPFHIQAEVT-IKTNFYGTrdVCT--ELLPLIKPGG---RVVNVSSMTSLMALKGCS 151
Cdd:cd05367   77 ERDLLINNAGSLGPVSKIEFIDLDELQKyFDLNLTSP--VCLtsTLLRAFKKRGlkkTVVNVSSGAAVNPFKGWG 149
GlcDH_SDR_c cd05358
glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; GlcDH, is a tetrameric member of the SDR ...
6-258 3.24e-17

glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187616 [Multi-domain]  Cd Length: 253  Bit Score: 78.96  E-value: 3.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05358    4 KVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEIKAVGGKAIAVQADVSKEEDVVALFQSAIKEFGTLD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI----AFKMADPTPFHIQAEVTIKTNFYGTRDVCTELL-PLIKpgGRVVNVSSmtslmalkgcspelqqkfrs 160
Cdd:cd05358   84 ILVNNAGLqgdaSSHEMTLEDWNKVIDVNLTGQFLCAREAIKRFRkSKIK--GKIINMSS-------------------- 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkVHEKEGWPS-SAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMAGPs 239
Cdd:cd05358  142 ----------------------VHEKIPWPGhVNYAASKGGVKMMT----KTLAQEYAPKGIRVNAIAPGAINTPINAE- 194
                        250
                 ....*....|....*....
gi 512960259 240 ATKSPEEGAETpiyLALLP 258
Cdd:cd05358  195 AWDDPEQRADL---LSLIP 210
DHRS1_HSDL2-like_SDR_c cd05338
human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid ...
6-269 3.82e-17

human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs; This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187597 [Multi-domain]  Cd Length: 246  Bit Score: 78.59  E-value: 3.82e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRA------------AVQQLQAEGLSPRFHQLDIDDLQSIRAV 73
Cdd:cd05338    4 KVAFVTGASRGIGRAIALRLAKA-GATVVVAAKTASEGDNgsakslpgtieeTAEEIEAAGGQALPIVVDVRDEDQVRAL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  74 RDFLRKEYGGLDVLINNAG-IAFKMADPTPFHiQAEVTIKTNFYGTRDVCTELLPLIKPG--GRVVNVSSMTSLMAlkgc 150
Cdd:cd05338   83 VEATVDQFGRLDILVNNAGaIWLSLVEDTPAK-RFDLMQRVNLRGTYLLSQAALPHMVKAgqGHILNISPPLSLRP---- 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 151 spelqqkfrsetiteeelvglmnkfvedtknkvhekeGWPSSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPG- 229
Cdd:cd05338  158 -------------------------------------ARGDVAYAAGKAGMSRL----TLGLAAELRRHGIAVNSLWPSt 196
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 512960259 230 ----WVRTDMAG---PSATKSPEEGAETPIYLALLPPDSRgpHGQFV 269
Cdd:cd05338  197 aietPAATELSGgsdPARARSPEILSDAVLAILSRPAAER--TGLVV 241
PKR_SDR_c cd08945
Polyketide ketoreductase, classical (c) SDR; Polyketide ketoreductase (KR) is a classical SDR ...
5-236 7.06e-17

Polyketide ketoreductase, classical (c) SDR; Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187649 [Multi-domain]  Cd Length: 258  Bit Score: 77.96  E-value: 7.06e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:cd08945    3 SEVALVTGATSGIGLAIARRLGKE-GLRVFVCARGEEGLATTVKELREAGVEADGRTCDVRSVPEIEALVAAAVARYGPI 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAG------IAfKMADPTPFHIqaevtIKTN----FYGTRDVCTELLPLIKPGGRVVNVSSMTSLMALKGCSPel 154
Cdd:cd08945   82 DVLVNNAGrsgggaTA-ELADELWLDV-----VETNltgvFRVTKEVLKAGGMLERGTGRIINIASTGGKQGVVHAAP-- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 155 qqkfrsetiteeelvglmnkfvedtknkvhekegwpssaYGVSKIGVTVLSRihARKLSEERGGdkILLNACCPGWVRTD 234
Cdd:cd08945  154 ---------------------------------------YSASKHGVVGFTK--ALGLELARTG--ITVNAVCPGFVETP 190

                 ..
gi 512960259 235 MA 236
Cdd:cd08945  191 MA 192
fabG PRK05565
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-255 8.15e-17

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 235506 [Multi-domain]  Cd Length: 247  Bit Score: 77.57  E-value: 8.15e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK05565   6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKID 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA-FKMAdptpfhiqAEVT-------IKTNFYGTRDVCTELLPLI--KPGGRVVNVSSMTSLMalkGCSPElq 155
Cdd:PRK05565  86 ILVNNAGISnFGLV--------TDMTdeewdrvIDVNLTGVMLLTRYALPYMikRKSGVIVNISSIWGLI---GASCE-- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLsrIHArkLSEERGGDKILLNACCPGWVRTDM 235
Cdd:PRK05565 153 ------------------------------------VLYSASKGAVNAF--TKA--LAKELAPSGIRVNAVAPGAIDTEM 192
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 512960259 236 -AGPSATK--------------SPEEGAETPIYLA 255
Cdd:PRK05565 193 wSSFSEEDkeglaeeiplgrlgKPEEIAKVVLFLA 227
PRK06128 PRK06128
SDR family oxidoreductase;
6-252 8.79e-17

SDR family oxidoreductase;


Pssm-ID: 180413 [Multi-domain]  Cd Length: 300  Bit Score: 78.36  E-value: 8.79e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLT--ARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK06128  56 RKALITGADSGIGRATAIAFARE-GADIALNylPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELGG 134
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAG--IAFK-MADPTpfHIQAEVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTSLMAlkgcSPELQQkfrs 160
Cdd:PRK06128 135 LDILVNIAGkqTAVKdIADIT--TEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP----SPTLLD---- 204
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpssaYGVSKIGVTVLSRIHARKLSeERGgdkILLNACCPGWVRTDMAgPSA 240
Cdd:PRK06128 205 ---------------------------------YASTKAAIVAFTKALAKQVA-EKG---IRVNAVAPGPVWTPLQ-PSG 246
                        250
                 ....*....|....*.
gi 512960259 241 TKSPEE----GAETPI 252
Cdd:PRK06128 247 GQPPEKipdfGSETPM 262
PRK05854 PRK05854
SDR family oxidoreductase;
6-149 1.05e-16

SDR family oxidoreductase;


Pssm-ID: 235627 [Multi-domain]  Cd Length: 313  Bit Score: 78.18  E-value: 1.05e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdlcrRFSG---DVVLTARDEARGRAAVQQLQAEglSPR----FHQLDIDDLQSIRAVRDFLR 78
Cdd:PRK05854  15 KRAVVTGASDGLGLGLAR----RLAAagaEVILPVRNRAKGEAAVAAIRTA--VPDaklsLRALDLSSLASVAALGEQLR 88
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  79 KEYGGLDVLINNAGIafkMADPTPfHIQA---EVTIKTNFYGTRDVCTELLPLIKPGG-RVVnvsSMTSLMALKG 149
Cdd:PRK05854  89 AEGRPIHLLINNAGV---MTPPER-QTTAdgfELQFGTNHLGHFALTAHLLPLLRAGRaRVT---SQSSIAARRG 156
PRK06949 PRK06949
SDR family oxidoreductase;
6-235 1.30e-16

SDR family oxidoreductase;


Pssm-ID: 180773 [Multi-domain]  Cd Length: 258  Bit Score: 77.11  E-value: 1.30e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGdVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06949  10 KVALVTGASSGLGARFAQVLAQAGAK-VVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTID 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAF--KMADPTP--FHIQAEVTIKTNFYGTRDVCTELL------PLIKPGGRVVNVSSMTSLMALkgcsPELq 155
Cdd:PRK06949  89 ILVNNSGVSTtqKLVDVTPadFDFVFDTNTRGAFFVAQEVAKRMIarakgaGNTKPGGRIINIASVAGLRVL----PQI- 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVtvlsrIH-ARKLSEERGGDKILLNACCPGWVRTD 234
Cdd:PRK06949 164 ------------------------------------GLYCMSKAAV-----VHmTRAMALEWGRHGINVNAICPGYIDTE 202

                 .
gi 512960259 235 M 235
Cdd:PRK06949 203 I 203
CAD_SDR_c cd08934
clavulanic acid dehydrogenase (CAD), classical (c) SDR; CAD catalyzes the NADP-dependent ...
6-166 1.97e-16

clavulanic acid dehydrogenase (CAD), classical (c) SDR; CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187639 [Multi-domain]  Cd Length: 243  Bit Score: 76.42  E-value: 1.97e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd08934    4 KVALVTGASSGIGEATARALAAE-GAAVAIAARRVDRLEALADELEAEGGKALVLELDVTDEQQVDAAVERTVEALGRLD 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI----AFKMADPTPFHIQAEVTIKTNFYGTRDVctelLPLIKP--GGRVVNVSSMTSLMALKGCSPELQQKFR 159
Cdd:cd08934   83 ILVNNAGImllgPVEDADTTDWTRMIDTNLLGLMYTTHAA----LPHHLLrnKGTIVNISSVAGRVAVRNSAVYNATKFG 158
                        170
                 ....*....|.
gi 512960259 160 ----SETITEE 166
Cdd:cd08934  159 vnafSEGLRQE 169
Ycik_SDR_c cd05340
Escherichia coli K-12 YCIK-like, classical (c) SDRs; Escherichia coli K-12 YCIK and related ...
6-267 1.98e-16

Escherichia coli K-12 YCIK-like, classical (c) SDRs; Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187599 [Multi-domain]  Cd Length: 236  Bit Score: 76.46  E-value: 1.98e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCrRFSGDVVLTARDEARGRAAVQQLQAEG-LSPRFHQLDIDDL--QSIRAVRDFLRKEYG 82
Cdd:cd05340    5 RIILVTGASDGIGREAALTYA-RYGATVILLGRNEEKLRQVADHINEEGgRQPQWFILDLLTCtsENCQQLAQRIAVNYP 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGIAFK---MADPTPFHIQ--AEVTIKTNFYGTRdvctELLPLIKPggrvvnvssmtslmalkgcSPELQQK 157
Cdd:cd05340   84 RLDGVLHNAGLLGDvcpLSEQNPQVWQdv*QVNVNATFMLTQ----ALLPLLLK-------------------SDAGSLV 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 FRSETITEEelvGLMNkfvedtknkvhekegWpsSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDM-- 235
Cdd:cd05340  141 FTSSSVGRQ---GRAN---------------W--GAYAVSKFATEGL*QV----LADEYQQRNLRVNCINPGGTRTAMra 196
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 512960259 236 -----AGPSATKSPEEgaETPIYLALLPPDSRGPHGQ 267
Cdd:cd05340  197 safptEDPQKLKTPAD--IMPLYLWLMGDDSRRKTGM 231
PRK12829 PRK12829
short chain dehydrogenase; Provisional
6-236 2.84e-16

short chain dehydrogenase; Provisional


Pssm-ID: 183778 [Multi-domain]  Cd Length: 264  Bit Score: 76.25  E-value: 2.84e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEArgraAVQQLQAE--GLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK12829  12 LRVLVTGGASGIGRAIAEAFAEA-GARVHVCDVSEA----ALAATAARlpGAKVTATVADVADPAQVERVFDTAVERFGG 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIA---FKMADPTPFHIQAevTIKTNFYGTRDVCTELLPLIKPGGR---VVNVSSMTSLMALKGCSPelqqk 157
Cdd:PRK12829  87 LDVLVNNAGIAgptGGIDEITPEQWEQ--TLAVNLNGQFYFARAAVPLLKASGHggvIIALSSVAGRLGYPGRTP----- 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 158 frsetiteeelvglmnkfvedtknkvhekegwpssaYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTDMA 236
Cdd:PRK12829 160 ------------------------------------YAASKWAVVGLVKSLAIEL----GPLGIRVNAILPGIVRGPRM 198
TR_SDR_c cd05329
tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs; This subgroup ...
6-274 2.92e-16

tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs; This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187590 [Multi-domain]  Cd Length: 251  Bit Score: 76.33  E-value: 2.92e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCrRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG-L 84
Cdd:cd05329    7 KTALVTGGTKGIGYAIVEELA-GLGAEVYTCARNQKELDECLTEWREKGFKVEGSVCDVSSRSERQELMDTVASHFGGkL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAG--IAFKMADPTPFHIQAevTIKTNFYGTRDVCTELLPLIKPGGR--VVNVSSMTSLMALKGCSPelqqkfrs 160
Cdd:cd05329   86 NILVNNAGtnIRKEAKDYTEEDYSL--IMSTNFEAAYHLSRLAHPLLKASGNgnIVFISSVAGVIAVPSGAP-------- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpssaYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTDMAGPsA 240
Cdd:cd05329  156 ---------------------------------YGATKGALNQL----TRSLACEWAKDNIRVNAVAPWVIATPLVEP-V 197
                        250       260       270
                 ....*....|....*....|....*....|....
gi 512960259 241 TKSPEEgaetpiYLALLppdSRGPHGQFVQEKRV 274
Cdd:cd05329  198 IQQKEN------LDKVI---ERTPLKRFGEPEEV 222
PRK06198 PRK06198
short chain dehydrogenase; Provisional
6-249 4.10e-16

short chain dehydrogenase; Provisional


Pssm-ID: 180462 [Multi-domain]  Cd Length: 260  Bit Score: 75.81  E-value: 4.10e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06198   7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGRLD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI----AFKMADPTPFHIQAEVTIKTNFYGTRDVcTELLPLIKPGGRVVNVSSMTSlmalKGCSPELqqkfrse 161
Cdd:PRK06198  87 ALVNAAGLtdrgTILDTSPELFDRHFAVNVRAPFFLMQEA-IKLMRRRKAEGTIVNIGSMSA----HGGQPFL------- 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 162 titeeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLSEerggDKILLNACCPGWVRTDmaGPSAT 241
Cdd:PRK06198 155 ------------------------------AAYCASKGALATLTRNAAYALLR----NRIRVNGLNIGWMATE--GEDRI 198

                 ....*...
gi 512960259 242 KSPEEGAE 249
Cdd:PRK06198 199 QREFHGAP 206
PRK12824 PRK12824
3-oxoacyl-ACP reductase;
5-237 4.92e-16

3-oxoacyl-ACP reductase;


Pssm-ID: 183773 [Multi-domain]  Cd Length: 245  Bit Score: 75.57  E-value: 4.92e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfsGDVVLTArDEARGRAAVQQLQAEGLSP---RFHQLDIDDLQSIRAVRDFLRKEY 81
Cdd:PRK12824   2 KKIALVTGAKRGIGSAIARELLND--GYRVIAT-YFSGNDCAKDWFEEYGFTEdqvRLKELDVTDTEECAEALAEIEEEE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 GGLDVLINNAGIAF-KMADPTPFHIQAEVtIKTNFYGTRDVCTELLPLI--KPGGRVVNVSsmtSLMALKGcspelqqkf 158
Cdd:PRK12824  79 GPVDILVNNAGITRdSVFKRMSHQEWNDV-INTNLNSVFNVTQPLFAAMceQGYGRIINIS---SVNGLKG--------- 145
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 159 rsetiteeeLVGLMNkfvedtknkvhekegwpssaYGVSKIGVTVLSRIHARklseERGGDKILLNACCPGWVRTDMAG 237
Cdd:PRK12824 146 ---------QFGQTN--------------------YSAAKAGMIGFTKALAS----EGARYGITVNCIAPGYIATPMVE 191
PRK12827 PRK12827
short chain dehydrogenase; Provisional
5-236 6.08e-16

short chain dehydrogenase; Provisional


Pssm-ID: 237219 [Multi-domain]  Cd Length: 249  Bit Score: 75.14  E-value: 6.08e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGR----AAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKE 80
Cdd:PRK12827   6 SRRVLITGGSGGLGRAIAVRLAAD-GADVIVLDIHPMRGRaeadAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  81 YGGLDVLINNAGIAFKMADPTPFHIQAEVTIKTNFYGTRDVCTELL-PLIKP--GGRVVNVSSMTSLMAlkgcspelqqk 157
Cdd:PRK12827  85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALpPMIRArrGGRIVNIASVAGVRG----------- 153
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 158 frsetiteeelvglmnkfvedtknkvHEKEGwpssAYGVSKIGVTVLSRIHARKLSEERggdkILLNACCPGWVRTDMA 236
Cdd:PRK12827 154 --------------------------NRGQV----NYAASKAGLIGLTKTLANELAPRG----ITVNAVAPGAINTPMA 198
PRK12828 PRK12828
short chain dehydrogenase; Provisional
6-255 7.86e-16

short chain dehydrogenase; Provisional


Pssm-ID: 237220 [Multi-domain]  Cd Length: 239  Bit Score: 74.83  E-value: 7.86e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLspRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK12828   8 KVVAITGGFGGLGRATAAWLAAR-GARVALIGRGAAPLSQTLPGVPADAL--RIGGIDLVDPQAARRAVDEVNRQFGRLD 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGiAF---KMADPTPfhIQAEVTIKTNFYGTRDVCTELLP-LIK-PGGRVVNVSSMTSLMALKGcspelqqkfrs 160
Cdd:PRK12828  85 ALVNIAG-AFvwgTIADGDA--DTWDRMYGVNVKTTLNASKAALPaLTAsGGGRIVNIGAGAALKAGPG----------- 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMAGP-- 238
Cdd:PRK12828 151 ------------------------------MGAYAAAKAGVARLT----EALAAELLDRGITVNAVLPSIIDTPPNRAdm 196
                        250       260
                 ....*....|....*....|..
gi 512960259 239 -----SATKSPEEGAETPIYLA 255
Cdd:PRK12828 197 pdadfSRWVTPEQIAAVIAFLL 218
PRK07201 PRK07201
SDR family oxidoreductase;
6-140 8.41e-16

SDR family oxidoreductase;


Pssm-ID: 235962 [Multi-domain]  Cd Length: 657  Bit Score: 76.91  E-value: 8.41e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07201 372 KVVLITGASSGIGRATAIKVAEA-GATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHVD 450
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAG--IAFKMADPTP-FHiQAEVTIKTNFYGTRDVCTELLP--LIKPGGRVVNVSS 140
Cdd:PRK07201 451 YLVNNAGrsIRRSVENSTDrFH-DYERTMAVNYFGAVRLILGLLPhmRERRFGHVVNVSS 509
3alpha_HSD_SDR_c cd05328
alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs; Bacterial 3-alpha_HSD, ...
9-267 1.02e-15

alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs; Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187589 [Multi-domain]  Cd Length: 250  Bit Score: 74.84  E-value: 1.02e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLcrRFSGDVVLtardeargraavqqlqAEGLSPRFHQLDIDDLQSIR-AVRDFLRKEYGGLDVL 87
Cdd:cd05328    3 VITGAASGIGAATAELL--EDAGHTVI----------------GIDLREADVIADLSTPEGRAaAIADVLARCSGVLDGL 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  88 INNAGIafkmadptPFHIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLmalkgcspELQQKfrsetitE 165
Cdd:cd05328   65 VNCAGV--------GGTTVAGLVLKVNYFGLRALMEALLPRLRKghGPAAVVVSSIAGA--------GWAQD-------K 121
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 166 EELVGLMNKFVEDTKNKVHEKEGWPSS-AYGVSKIGVTVLSRIHARKLSEERGgdkILLNACCPGWVRT--------DMA 236
Cdd:cd05328  122 LELAKALAAGTEARAVALAEHAGQPGYlAYAGSKEALTVWTRRRAATWLYGAG---VRVNTVAPGPVETpilqaflqDPR 198
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 512960259 237 GPSATKS----------PEEGAETPIYLAllPPDSRGPHGQ 267
Cdd:cd05328  199 GGESVDAfvtpmgrraePDEIAPVIAFLA--SDAASWINGA 237
fabG PRK07666
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-163 1.02e-15

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 236074 [Multi-domain]  Cd Length: 239  Bit Score: 74.34  E-value: 1.02e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK07666   8 KNALITGAGRGIGRAVAIALAKE--GvNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIA-F-KMADPTPfhIQAEVTIKTNFYGTRDVCTELLP-LI-KPGGRVVNVSSMT-------------SLMAL 147
Cdd:PRK07666  86 DILINNAGISkFgKFLELDP--AEWEKIIQVNLMGVYYATRAVLPsMIeRQSGDIINISSTAgqkgaavtsaysaSKFGV 163
                        170
                 ....*....|....*.
gi 512960259 148 KGCSPELQQKFRSETI 163
Cdd:PRK07666 164 LGLTESLMQEVRKHNI 179
PRK08643 PRK08643
(S)-acetoin forming diacetyl reductase;
5-250 1.03e-15

(S)-acetoin forming diacetyl reductase;


Pssm-ID: 181518 [Multi-domain]  Cd Length: 256  Bit Score: 74.76  E-value: 1.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAItrdlCRRFSGD---VVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEY 81
Cdd:PRK08643   2 SKVALVTGAGQGIGFAI----AKRLVEDgfkVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTF 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 GGLDVLINNAGIA--FKMADPTP--FHIQAEVTIKTNFYGTRdVCTELLPLIKPGGRVVNVSSMTSLMAlkgcSPELqqk 157
Cdd:PRK08643  78 GDLNVVVNNAGVAptTPIETITEeqFDKVYNINVGGVIWGIQ-AAQEAFKKLGHGGKIINATSQAGVVG----NPEL--- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 frsetiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTDM-- 235
Cdd:PRK08643 150 ----------------------------------AVYSSTKFAVRGLTQTAARDLASE----GITVNAYAPGIVKTPMmf 191
                        250       260
                 ....*....|....*....|
gi 512960259 236 -----AGPSATKSPEEGAET 250
Cdd:PRK08643 192 diahqVGENAGKPDEWGMEQ 211
PRK06181 PRK06181
SDR family oxidoreductase;
6-149 1.14e-15

SDR family oxidoreductase;


Pssm-ID: 235726 [Multi-domain]  Cd Length: 263  Bit Score: 74.63  E-value: 1.14e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGfaitRDLCRRFSG---DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK06181   2 KVVIITGASEGIG----RALAVRLARagaQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFG 77
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  83 GLDVLINNAGI----AF-KMADPTPFHIQAEVtiktNFYGTRdVCTEL-LP-LIKPGGRVVNVSSMTSLMALKG 149
Cdd:PRK06181  78 GIDILVNNAGItmwsRFdELTDLSVFERVMRV----NYLGAV-YCTHAaLPhLKASRGQIVVVSSLAGLTGVPT 146
PRK13394 PRK13394
3-hydroxybutyrate dehydrogenase; Provisional
6-252 1.48e-15

3-hydroxybutyrate dehydrogenase; Provisional


Pssm-ID: 184025 [Multi-domain]  Cd Length: 262  Bit Score: 74.55  E-value: 1.48e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK13394   8 KTAVVTGAASGIGKEIALELARA-GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIafKMADPT---PFH----IQAeVTIKTNFYGTRDVCTELLPlIKPGGRVVNVSSmtslmalkgcspelqqkf 158
Cdd:PRK13394  87 ILVSNAGI--QIVNPIenySFAdwkkMQA-IHVDGAFLTTKAALKHMYK-DDRGGVVIYMGS------------------ 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 159 rsetiteeelvglmnkfvedtknkVHEKEGWP-SSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDMAg 237
Cdd:PRK13394 145 ------------------------VHSHEASPlKSAYVTAKHGLLGLARV----LAKEGAKHNVRSHVVCPGFVRTPLV- 195
                        250
                 ....*....|....*
gi 512960259 238 psATKSPEEGAETPI 252
Cdd:PRK13394 196 --DKQIPEQAKELGI 208
PRK07063 PRK07063
SDR family oxidoreductase;
6-259 1.89e-15

SDR family oxidoreductase;


Pssm-ID: 235924 [Multi-domain]  Cd Length: 260  Bit Score: 73.93  E-value: 1.89e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPR--FHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK07063   8 KVALVTGAAQGIGAAIAR-AFAREGAAVALADLDAALAERAAAAIARDVAGARvlAVPADVTDAASVAAAVAAAEEAFGP 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGI-AFKmadpTPFHIQAE-------VTIKTNFYGTRDVctelLP--LIKPGGRVVNVSSMTSLMALKGCSPe 153
Cdd:PRK07063  87 LDVLVNNAGInVFA----DPLAMTDEdwrrcfaVDLDGAWNGCRAV----LPgmVERGRGSIVNIASTHAFKIIPGCFP- 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 154 lqqkfrsetiteeelvglmnkfvedtknkvhekegwpssaYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRT 233
Cdd:PRK07063 158 ----------------------------------------YPVAKHGLLGLT----RALGIEYAARNVRVNAIAPGYIET 193
                        250       260
                 ....*....|....*....|....*.
gi 512960259 234 DMAGPSATKSPEEGAETPIYLALLPP 259
Cdd:PRK07063 194 QLTEDWWNAQPDPAAARAETLALQPM 219
PRK06180 PRK06180
short chain dehydrogenase; Provisional
1-244 2.33e-15

short chain dehydrogenase; Provisional


Pssm-ID: 180446 [Multi-domain]  Cd Length: 277  Bit Score: 74.18  E-value: 2.33e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSScSRVALVTGANKGIGFAITRDLCRRfsGD-VVLTARDEARgRAAVQQLQAEGLSPRfhQLDIDDLQSIRAVRDFLRK 79
Cdd:PRK06180   1 MSS-MKTWLITGVSSGFGRALAQAALAA--GHrVVGTVRSEAA-RADFEALHPDRALAR--LLDVTDFDAIDAVVADAEA 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  80 EYGGLDVLINNAGI----AFKMADPTPFHIQAEVtiktNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMALKGCSPE 153
Cdd:PRK06180  75 TFGPIDVLVNNAGYghegAIEESPLAEMRRQFEV----NVFGAVAMTKAVLPGMRArrRGHIVNITSMGGLITMPGIGYY 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 154 LQQKFRSETITEeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLsriharklseerggdkillnACCPGWVRT 233
Cdd:PRK06180 151 CGSKFALEGISE-------------------------SLAKEVAPFGIHVT--------------------AVEPGSFRT 185
                        250
                 ....*....|.
gi 512960259 234 DMAGPSATKSP 244
Cdd:PRK06180 186 DWAGRSMVRTP 196
meso-BDH-like_SDR_c cd05366
meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs; 2,3-butanediol dehydrogenases ...
5-235 2.49e-15

meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs; 2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187624 [Multi-domain]  Cd Length: 257  Bit Score: 73.56  E-value: 2.49e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRdlcrRFSGD----VVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKE 80
Cdd:cd05366    2 SKVAIITGAAQGIGRAIAE----RLAADgfniVLADLNLEEAAKSTIQEISEAGYNAVAVGADVTDKDDVEALIDQAVEK 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  81 YGGLDVLINNAGIAfkMADP----TP--FHIQAEVTIKTNFYGTRDVCTELLPLiKPGGRVVNVSSMTSLMALkgcsPEL 154
Cdd:cd05366   78 FGSFDVMVNNAGIA--PITPlltiTEedLKKVYAVNVFGVLFGIQAAARQFKKL-GHGGKIINASSIAGVQGF----PNL 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 155 qqkfrsetiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLSeergGDKILLNACCPGWVRTD 234
Cdd:cd05366  151 -------------------------------------GAYSASKFAVRGLTQTAAQELA----PKGITVNAYAPGIVKTE 189

                 .
gi 512960259 235 M 235
Cdd:cd05366  190 M 190
TER_DECR_SDR_a cd05369
Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER ...
6-140 3.53e-15

Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187627 [Multi-domain]  Cd Length: 249  Bit Score: 73.00  E-value: 3.53e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCrRFSGDVVLTARDEARGRAAVQQLQAEGLSPRF-HQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:cd05369    4 KVAFITGGGTGIGKAIAKAFA-ELGASVAIAGRKPEVLEAAAEEISSATGGRAHpIQCDVRDPEAVEAAVDETLKEFGKI 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512960259  85 DVLINNAGIAFkmadPTPF-HIQA---EVTIKTNFYGTRDVCTELLP-LI--KPGGRVVNVSS 140
Cdd:cd05369   83 DILINNAAGNF----LAPAeSLSPngfKTVIDIDLNGTFNTTKAVGKrLIeaKHGGSILNISA 141
PRK08324 PRK08324
bifunctional aldolase/short-chain dehydrogenase;
6-152 4.52e-15

bifunctional aldolase/short-chain dehydrogenase;


Pssm-ID: 236241 [Multi-domain]  Cd Length: 681  Bit Score: 74.88  E-value: 4.52e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAItrdlCRRFSGD---VVLTARDEARGRAAVQQLQAEGlSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK08324 423 KVALVTGAAGGIGKAT----AKRLAAEgacVVLADLDEEAAEAAAAELGGPD-RALGVACDVTDEAAVQAAFEEAALAFG 497
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  83 GLDVLINNAGIAF-KMADPTP---FHIQAEVTIKTNFYGTRDVCtELLPLIKPGGRVVNVSSMTSLMALKGCSP 152
Cdd:PRK08324 498 GVDIVVSNAGIAIsGPIEETSdedWRRSFDVNATGHFLVAREAV-RIMKAQGLGGSIVFIASKNAVNPGPNFGA 570
PRK07074 PRK07074
SDR family oxidoreductase;
5-233 4.78e-15

SDR family oxidoreductase;


Pssm-ID: 180823 [Multi-domain]  Cd Length: 257  Bit Score: 72.88  E-value: 4.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAItrdlCRRF--SGDVVLTA-RDEARGRAAVQQLQAEGLSPRfhQLDIDDLQSIRAVRDFLRKEY 81
Cdd:PRK07074   2 KRTALVTGAAGGIGQAL----ARRFlaAGDRVLALdIDAAALAAFADALGDARFVPV--ACDLTDAASLAAALANAAAER 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 GGLDVLINNAGIA--FKMADPTPFHIQAEVTIKTN--FYGTRDVCTELLPLIKpgGRVVNVSSMTSLMALkgcspelqqk 157
Cdd:PRK07074  76 GPVDVLVANAGAAraASLHDTTPASWRADNALNLEaaYLCVEAVLEGMLKRSR--GAVVNIGSVNGMAAL---------- 143
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512960259 158 frsetiteeelvglmnkfvedtknkvhekeGWPssAYGVSKIGVtvlsrIH-ARKLSEERGGDKILLNACCPGWVRT 233
Cdd:PRK07074 144 ------------------------------GHP--AYSAAKAGL-----IHyTKLLAVEYGRFGIRANAVAPGTVKT 183
DHRS-12_like_SDR_c-like cd09808
human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like ...
5-273 5.02e-15

human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs; Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187668 [Multi-domain]  Cd Length: 255  Bit Score: 73.01  E-value: 5.02e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPR--FHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:cd09808    1 GRSFLITGANSGIGKAAALAIAKR-GGTVHMVCRNQTRAEEARKEIETESGNQNifLHIVDMSDPKQVWEFVEEFKEEGK 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGIAFKMADPTPFHIqaEVTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMalkgcspelqQKFRS 160
Cdd:cd09808   80 KLHVLINNAGCMVNKRELTEDGL--EKNFATNTLGTYILTTHLIPVLEkeEDPRVITVSSGGMLV----------QKLNT 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 ETITEEE--LVGLMnKFVEDTKNKVHEKEGWPSSAYGVSkigvtvLSRIHarklseerggdkillnaccPGW-----VRT 233
Cdd:cd09808  148 NNLQSERtaFDGTM-VYAQNKRQQVIMTEQWAKKHPEIH------FSVMH-------------------PGWadtpaVRN 201
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 512960259 234 DMAGPSAT-----KSPEEGAETPIYLALLPPDSRGPHGQFVQEKR 273
Cdd:cd09808  202 SMPDFHARfkdrlRSEEQGADTVVWLALSSAAAKAPSGRFYQDRK 246
PRK07832 PRK07832
SDR family oxidoreductase;
8-147 5.06e-15

SDR family oxidoreductase;


Pssm-ID: 181139 [Multi-domain]  Cd Length: 272  Bit Score: 73.15  E-value: 5.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQ-LDIDDLQSIRAVRDFLRKEYGGLDV 86
Cdd:PRK07832   3 CFVTGAASGIGRATALRLAAQ-GAELFLTDRDADGLAQTVADARALGGTVPEHRaLDISDYDAVAAFAADIHAAHGSMDV 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  87 LINNAGIA-FKMADPTPfHIQAEVTIKTNFYGTRDVCTELLP-LIKP--GGRVVNVSSMTSLMAL 147
Cdd:PRK07832  82 VMNIAGISaWGTVDRLT-HEQWRRMVDVNLMGPIHVIETFVPpMVAAgrGGHLVNVSSAAGLVAL 145
PRK07109 PRK07109
short chain dehydrogenase; Provisional
5-143 5.11e-15

short chain dehydrogenase; Provisional


Pssm-ID: 235935 [Multi-domain]  Cd Length: 334  Bit Score: 73.80  E-value: 5.11e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK07109   8 RQVVVITGASAGVGRATARAFARR-GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI 86
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  85 DVLINNAGIA-FKMADPTPFHIQAEVTiKTNF----YGTRDVctelLPLIKP--GGRVVNVSSMTS 143
Cdd:PRK07109  87 DTWVNNAMVTvFGPFEDVTPEEFRRVT-EVTYlgvvHGTLAA----LRHMRPrdRGAIIQVGSALA 147
PRK06182 PRK06182
short chain dehydrogenase; Validated
5-141 7.29e-15

short chain dehydrogenase; Validated


Pssm-ID: 180448 [Multi-domain]  Cd Length: 273  Bit Score: 72.69  E-value: 7.29e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRrfSGDVVLTArdeARGRAAVQQLQAEGLSPRfhQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK06182   3 KKVALVTGASSGIGKATARRLAA--QGYTVYGA---ARRVDKMEDLASLGVHPL--SLDVTDEASIKAAVDTIIAEEGRI 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFKMA-DPTPFHiQAEVTIKTNFYGTRDVCTELLPLI--KPGGRVVNVSSM 141
Cdd:PRK06182  76 DVLVNNAGYGSYGAiEDVPID-EARRQFEVNLFGAARLTQLVLPHMraQRSGRIINISSM 134
PRK06841 PRK06841
short chain dehydrogenase; Provisional
6-149 9.37e-15

short chain dehydrogenase; Provisional


Pssm-ID: 180723 [Multi-domain]  Cd Length: 255  Bit Score: 72.00  E-value: 9.37e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSprfHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06841  16 KVAVVTGGASGIGHAIAELFAAK-GARVALLDRSEDVAEVAAQLLGGNAKG---LVCDVSDSQSVEAAVAAVISAFGRID 91
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  86 VLINNAGIAfkMADPtpfhiqAE--------VTIKTNFYGTRDVCTELLP--LIKPGGRVVNVSSMTSLMALKG 149
Cdd:PRK06841  92 ILVNSAGVA--LLAP------AEdvseedwdKTIDINLKGSFLMAQAVGRhmIAAGGGKIVNLASQAGVVALER 157
17beta-HSDXI-like_SDR_c cd05339
human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid ...
7-149 9.48e-15

human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs; 17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-Adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187598 [Multi-domain]  Cd Length: 243  Bit Score: 71.89  E-value: 9.48e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRDLCRRFSgDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDV 86
Cdd:cd05339    1 IVLITGGGSGIGRLLALEFAKRGA-KVVILDINEKGAEETANNVRKAGGKVHYYKCDVSKREEVYEAAKKIKKEVGDVTI 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  87 LINNAGIAfkmADPTPFHIQ---AEVTIKTN----FYGTRdvctELLPLI--KPGGRVVNVSSMTSLMALKG 149
Cdd:cd05339   80 LINNAGVV---SGKKLLELPdeeIEKTFEVNtlahFWTTK----AFLPDMleRNHGHIVTIASVAGLISPAG 144
PRK07890 PRK07890
short chain dehydrogenase; Provisional
16-231 1.02e-14

short chain dehydrogenase; Provisional


Pssm-ID: 181159 [Multi-domain]  Cd Length: 258  Bit Score: 71.91  E-value: 1.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  16 GIGFAITRDLCRRFS---GDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVLINNag 92
Cdd:PRK07890  12 GVGPGLGRTLAVRAAragADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVDALVNN-- 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  93 iAFKM------ADPTPFHIQAevTIKTNFYGTRDVCTELLP-LIKPGGRVVNVSSMTslmalkgcSPELQQKFrsetite 165
Cdd:PRK07890  90 -AFRVpsmkplADADFAHWRA--VIELNVLGTLRLTQAFTPaLAESGGSIVMINSMV--------LRHSQPKY------- 151
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259 166 eelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWV 231
Cdd:PRK07890 152 --------------------------GAYKMAKGALLAAS----QSLATELGPQGIRVNSVAPGYI 187
PRK09072 PRK09072
SDR family oxidoreductase;
9-140 1.19e-14

SDR family oxidoreductase;


Pssm-ID: 236372 [Multi-domain]  Cd Length: 263  Bit Score: 71.90  E-value: 1.19e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfSGDVVLTARDEARgraaVQQLQAEGLSPRFHQL---DIDDLQSIRAVRDFLRkEYGGLD 85
Cdd:PRK09072   9 LLTGASGGIGQALAEALAAA-GARLLLVGRNAEK----LEALAARLPYPGRHRWvvaDLTSEAGREAVLARAR-EMGGIN 82
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  86 VLINNAGIA-FKM-ADPTPFHIQAEvtIKTNFYGTRDVCTELLPLIK--PGGRVVNVSS 140
Cdd:PRK09072  83 VLINNAGVNhFALlEDQDPEAIERL--LALNLTAPMQLTRALLPLLRaqPSAMVVNVGS 139
PRK08213 PRK08213
gluconate 5-dehydrogenase; Provisional
6-236 1.21e-14

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 181295 [Multi-domain]  Cd Length: 259  Bit Score: 71.90  E-value: 1.21e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLcRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK08213  13 KTALVTGGSRGLGLQIAEAL-GEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVD 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKmADPTPFHIQA-----EVTIKTNFYGTRDVCTELLpLIKPGGRVVNVSSMTslmALKGCSPELQQkfrs 160
Cdd:PRK08213  92 ILVNNAGATWG-APAEDHPVEAwdkvmNLNVRGLFLLSQAVAKRSM-IPRGYGRIINVASVA---GLGGNPPEVMD---- 162
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259 161 eTIteeelvglmnkfvedtknkvhekegwpssAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMA 236
Cdd:PRK08213 163 -TI-----------------------------AYNTSKGAVINFT----RALAAEWGPHGIRVNAIAPGFFPTKMT 204
LPOR_like_SDR_c_like cd09810
light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs; Classical ...
8-142 2.66e-14

light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs; Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187670 [Multi-domain]  Cd Length: 311  Bit Score: 71.39  E-value: 2.66e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVL 87
Cdd:cd09810    4 VVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKDSYSVLHCDLASLDSVRQFVDNFRRTGRPLDAL 83
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  88 INNAGIAFKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIK----PGGRVVNVSSMT 142
Cdd:cd09810   84 VCNAAVYLPTAKEPRFTADGfELTVGVNHLGHFLLTNLLLEDLQrsenASPRIVIVGSIT 143
SDR_c5 cd05346
classical (c) SDR, subgroup 5; These proteins are members of the classical SDR family, with a ...
8-140 2.80e-14

classical (c) SDR, subgroup 5; These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187604 [Multi-domain]  Cd Length: 249  Bit Score: 70.77  E-value: 2.80e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAItrdlCRRFSG---DVVLTARDEARgraaVQQLQAEgLSPRFH------QLDIDDLQSIRAVRDFLR 78
Cdd:cd05346    3 VLITGASSGIGEAT----ARRFAKagaKLILTGRRAER----LQELADE-LGAKFPvkvlplQLDVSDRESIEAALENLP 73
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  79 KEYGGLDVLINNAGIAFKMADPTPFHIQ-AEVTIKTNFYGTRDVCTELLP-LIKPG-GRVVNVSS 140
Cdd:cd05346   74 EEFRDIDILVNNAGLALGLDPAQEADLEdWETMIDTNVKGLLNVTRLILPiMIARNqGHIINLGS 138
PRK05855 PRK05855
SDR family oxidoreductase;
6-250 2.91e-14

SDR family oxidoreductase;


Pssm-ID: 235628 [Multi-domain]  Cd Length: 582  Bit Score: 72.32  E-value: 2.91e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK05855 316 KLVVVTGAGSGIGRETALAFARE-GAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVPD 394
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI--AFKMADPTPFHIQAevTIKTNFYGTRDVCTELLP-LIK--PGGRVVNVSSMTSLMALKGCspelqqkfrs 160
Cdd:PRK05855 395 IVVNNAGIgmAGGFLDTSAEDWDR--VLDVNLWGVIHGCRLFGRqMVErgTGGHIVNVASAAAYAPSRSL---------- 462
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDMAgpSA 240
Cdd:PRK05855 463 -------------------------------PAYATSKAAVLMLSEC----LRAELAAAGIGVTAICPGFVDTNIV--AT 505
                        250
                 ....*....|
gi 512960259 241 TKSPEEGAET 250
Cdd:PRK05855 506 TRFAGADAED 515
PRK08263 PRK08263
short chain dehydrogenase; Provisional
5-146 3.35e-14

short chain dehydrogenase; Provisional


Pssm-ID: 181334 [Multi-domain]  Cd Length: 275  Bit Score: 70.84  E-value: 3.35e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfsGD-VVLTARDEARgRAAVQQLQAEGLSPRfhQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK08263   3 EKVWFITGASRGFGRAWTEAALER--GDrVVATARDTAT-LADLAEKYGDRLLPL--ALDVTDRAAVFAAVETAVEHFGR 77
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  84 LDVLINNAGIA-FKMADPTPfHIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMA 146
Cdd:PRK08263  78 LDIVVNNAGYGlFGMIEEVT-ESEARAQIDTNFFGALWVTQAVLPYLREqrSGHIIQISSIGGISA 142
PRK07856 PRK07856
SDR family oxidoreductase;
6-237 5.15e-14

SDR family oxidoreductase;


Pssm-ID: 236116 [Multi-domain]  Cd Length: 252  Bit Score: 69.96  E-value: 5.15e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSGDVVLTArdearGRAAVQQlqAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07856   7 RVVLVTGGTRGIGAGIARAFLA--AGATVVVC-----GRRAPET--VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA-FKMADPTP--FHiqaEVTIKTNFYGTRDVCTELLPLIKP---GGRVVNVSSMTSLMALKGcspelqqkfr 159
Cdd:PRK07856  78 VLVNNAGGSpYALAAEASprFH---EKIVELNLLAPLLVAQAANAVMQQqpgGGSIVNIGSVSGRRPSPG---------- 144
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259 160 setiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLsrihARKLSEErGGDKILLNACCPGWVRTDMAG 237
Cdd:PRK07856 145 -------------------------------TAAYGAAKAGLLNL----TRSLAVE-WAPKVRVNAVVVGLVRTEQSE 186
PRK07825 PRK07825
short chain dehydrogenase; Provisional
6-149 1.18e-13

short chain dehydrogenase; Provisional


Pssm-ID: 181136 [Multi-domain]  Cd Length: 273  Bit Score: 69.20  E-value: 1.18e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLqaeGLsPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07825   6 KVVAITGGARGIGLATARALAAL-GARVAIGDLDEALAKETAAEL---GL-VVGGPLDVTDPASFAAFLDAVEADLGPID 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  86 VLINNAGIafkMadPT-PFHIQAE----VTIKTNFYGTRDVCTELLPLIKPGGR--VVNVSSMTSLMALKG 149
Cdd:PRK07825  81 VLVNNAGV---M--PVgPFLDEPDavtrRILDVNVYGVILGSKLAAPRMVPRGRghVVNVASLAGKIPVPG 146
PRK06196 PRK06196
oxidoreductase; Provisional
6-140 1.47e-13

oxidoreductase; Provisional


Pssm-ID: 235736 [Multi-domain]  Cd Length: 315  Bit Score: 69.33  E-value: 1.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLqaEGLSprFHQLDIDDLQSIRA----VRDFLRKey 81
Cdd:PRK06196  27 KTAIVTGGYSGLGLETTRALAQA-GAHVIVPARRPDVAREALAGI--DGVE--VVMLDLADLESVRAfaerFLDSGRR-- 99
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  82 ggLDVLINNAGIafkMADP-TPFHIQAEVTIKTNFYGTRDVCTELLPLIKPGG--RVVNVSS 140
Cdd:PRK06196 100 --IDILINNAGV---MACPeTRVGDGWEAQFATNHLGHFALVNLLWPALAAGAgaRVVALSS 156
PRK05693 PRK05693
SDR family oxidoreductase;
7-145 1.88e-13

SDR family oxidoreductase;


Pssm-ID: 168186 [Multi-domain]  Cd Length: 274  Bit Score: 68.66  E-value: 1.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITrDLCRRFSGDVVLTARDEARgraaVQQLQAEGLSPRfhQLDIDDLQSIRAVRDFLRKEYGGLDV 86
Cdd:PRK05693   3 VVLITGCSSGIGRALA-DAFKAAGYEVWATARKAED----VEALAAAGFTAV--QLDVNDGAALARLAEELEAEHGGLDV 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  87 LINNAGIAfKMADPTPFHIQAEV-TIKTNFYGTRDVCTELLPLIKPG-GRVVNVSSMTSLM 145
Cdd:PRK05693  76 LINNAGYG-AMGPLLDGGVEAMRrQFETNVFAVVGVTRALFPLLRRSrGLVVNIGSVSGVL 135
Mgc4172-like_SDR_c cd05343
human Mgc4172-like, classical (c) SDRs; Human Mgc4172-like proteins, putative SDRs. These ...
6-250 3.17e-13

human Mgc4172-like, classical (c) SDRs; Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187601 [Multi-domain]  Cd Length: 250  Bit Score: 67.54  E-value: 3.17e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRF-HQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:cd05343    7 RVALVTGASVGIGAAVARALVQH-GMKVVGCARRVDKIEALAAECQSAGYPTLFpYQCDLSNEEQILSMFSAIRTQHQGV 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGiafkMADPTPFHIQAEVTIKTNFYgtrdvctellplikpggrvVNVssmtslMALKGCSPELQQKFRSETIT 164
Cdd:cd05343   86 DVCINNAG----LARPEPLLSGKTEGWKEMFD-------------------VNV------LALSICTREAYQSMKERNVD 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 165 EEELVgLMNKFVEdtknkvHE-KEGWPSSAYGVSKIGVTVLSRIHARKLSEERggDKILLNACCPGWVRTDMAGPSATKS 243
Cdd:cd05343  137 DGHII-NINSMSG------HRvPPVSVFHFYAATKHAVTALTEGLRQELREAK--THIRATSISPGLVETEFAFKLHDND 207

                 ....*..
gi 512960259 244 PEEGAET 250
Cdd:cd05343  208 PEKAAAT 214
PRK12743 PRK12743
SDR family oxidoreductase;
6-237 3.28e-13

SDR family oxidoreductase;


Pssm-ID: 237187 [Multi-domain]  Cd Length: 256  Bit Score: 67.75  E-value: 3.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsG-DVVLT-ARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK12743   3 QVAIVTASDSGIGKACALLLAQQ--GfDIGITwHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAFKMADP-TPFHIQAEVtIKTNFYGTRdVCTELLP--LIKPG--GRVVNVSSmtslmalkgcspelqqkf 158
Cdd:PRK12743  81 IDVLVNNAGAMTKAPFLdMDFDEWRKI-FTVDVDGAF-LCSQIAArhMVKQGqgGRIINITS------------------ 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 159 rsetiteeelvglmnkfvedtknkVHEKEGWP-SSAYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTDMAG 237
Cdd:PRK12743 141 ------------------------VHEHTPLPgASAYTAAKHALGGLTKAMALELVEH----GILVNAVAPGAIATPMNG 192
SDR_c9 cd08931
classical (c) SDR, subgroup 9; This subgroup has the canonical active site tetrad and ...
10-154 3.45e-13

classical (c) SDR, subgroup 9; This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187636 [Multi-domain]  Cd Length: 227  Bit Score: 67.09  E-value: 3.45e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  10 VTGANKGIGfaitRDLCRRFSGD---VVLTARDEARGRAAVQQLQAEGLSPrfHQLDIDDLQSIR-AVRDFLRKEYGGLD 85
Cdd:cd08931    5 ITGAASGIG----RETALLFARNgwfVGLYDIDEDGLAALAAELGAENVVA--GALDVTDRAAWAaALADFAAATGGRLD 78
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  86 VLINNAGIA-FKMADPTPFHiQAEVTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSSMTSLMAlkgcSPEL 154
Cdd:cd08931   79 ALFNNAGVGrGGPFEDVPLA-AHDRMVDINVKGVLNGAYAALPYLKatPGARVINTASSSAIYG----QPDL 145
SDR_c6 cd05350
classical (c) SDR, subgroup 6; These proteins are members of the classical SDR family, with a ...
8-249 3.85e-13

classical (c) SDR, subgroup 6; These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187608 [Multi-domain]  Cd Length: 239  Bit Score: 67.35  E-value: 3.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVL 87
Cdd:cd05350    1 VLITGASSGIGRALAREFAKA-GYNVALAARRTDRLDELKAELLNPNPSVEVEILDVTDEERNQLVIAELEAELGGLDLV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  88 INNAGIAFkmadPTPFHI-QAEV---TIKTNFYGTRDVCTELLP--LIKPGGRVVNVSSMTSLMalkgcspelqqkfrse 161
Cdd:cd05350   80 IINAGVGK----GTSLGDlSFKAfreTIDTNLLGAAAILEAALPqfRAKGRGHLVLISSVAALR---------------- 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 162 titeeelvglmnkfvedtknkvhekeGWP-SSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTDMAGPSA 240
Cdd:cd05350  140 --------------------------GLPgAAAYSASKAALSSL----AESLRYDVKKRGIRVTVINPGFIDTPLTANMF 189
                        250
                 ....*....|...
gi 512960259 241 TK----SPEEGAE 249
Cdd:cd05350  190 TMpflmSVEQAAK 202
PRK07806 PRK07806
SDR family oxidoreductase;
5-140 3.88e-13

SDR family oxidoreductase;


Pssm-ID: 181126 [Multi-domain]  Cd Length: 248  Bit Score: 67.44  E-value: 3.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK07806   6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259  85 DVLINNA--GIAFKMADPTPfhiqaevtIKTNFYGTRDVCTELLPLIKPGGRVVNVSS 140
Cdd:PRK07806  86 DALVLNAsgGMESGMDEDYA--------MRLNRDAQRNLARAALPLMPAGSRVVFVTS 135
SDR_c1 cd05355
classical (c) SDR, subgroup 1; These proteins are members of the classical SDR family, with a ...
6-154 4.28e-13

classical (c) SDR, subgroup 1; These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187613 [Multi-domain]  Cd Length: 270  Bit Score: 67.70  E-value: 4.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAV--QQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:cd05355   27 KKALITGGDSGIGRAVAIAFARE-GADVAINYLPEEEDDAEEtkKLIEEEGRKCLLIPGDLGDESFCRDLVKEVVKEFGK 105
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  84 LDVLINNAG---IAFKMADPTPfhIQAEVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTslmALKGcSPEL 154
Cdd:cd05355  106 LDILVNNAAyqhPQESIEDITT--EQLEKTFRTNIFSMFYLTKAALPHLKKGSSIINTTSVT---AYKG-SPHL 173
A3DFK9-like_SDR_c cd09761
Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, ...
6-233 5.23e-13

Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs; This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187662 [Multi-domain]  Cd Length: 242  Bit Score: 66.83  E-value: 5.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSGD-VVLTARDEARGraaVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:cd09761    2 KVAIVTGGGHGIGKQICLDFLE--AGDkVVFADIDEERG---ADFAEAEGPNLFFVHGDVADETLVKFVVYAMLEKLGRI 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFKMADPTPFHIQAEVTIKTNFYGTRDV---CTEllPLIKPGGRVVNVSSMtslmalkgcspelqQKFRSE 161
Cdd:cd09761   77 DVLVNNAARGSKGILSSLLLEEWDRILSVNLTGPYELsryCRD--ELIKNKGRIINIAST--------------RAFQSE 140
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259 162 TITEeelvglmnkfvedtknkvhekegwpssAYGVSKIGVTVLSRIHARKLseergGDKILLNACCPGWVRT 233
Cdd:cd09761  141 PDSE---------------------------AYAASKGGLVALTHALAMSL-----GPDIRVNCISPGWINT 180
PRK07035 PRK07035
SDR family oxidoreductase;
6-237 6.85e-13

SDR family oxidoreductase;


Pssm-ID: 180802 [Multi-domain]  Cd Length: 252  Bit Score: 66.58  E-value: 6.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07035   9 KIALVTGASRGIGEAIAKLLAQ-QGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLD 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGiafkmADPTPFHIQA----------EVTIKTNFYgtrdVCTELLPLIKP--GGRVVNVSSmtslmaLKGCSPE 153
Cdd:PRK07035  88 ILVNNAA-----ANPYFGHILDtdlgafqktvDVNIRGYFF----MSVEAGKLMKEqgGGSIVNVAS------VNGVSPG 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 154 LQQkfrsetiteeelvGLmnkfvedtknkvhekegwpssaYGVSKIGVTVLSRIHARklseERGGDKILLNACCPGWVRT 233
Cdd:PRK07035 153 DFQ-------------GI----------------------YSITKAAVISMTKAFAK----ECAPFGIRVNALLPGLTDT 193

                 ....
gi 512960259 234 DMAG 237
Cdd:PRK07035 194 KFAS 197
PRK05866 PRK05866
SDR family oxidoreductase;
9-140 7.27e-13

SDR family oxidoreductase;


Pssm-ID: 235631 [Multi-domain]  Cd Length: 293  Bit Score: 67.07  E-value: 7.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVLI 88
Cdd:PRK05866  44 LLTGASSGIGEAAAEQFARR-GATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILI 122
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 512960259  89 NNAG--IAFKMADPTP-FHiQAEVTIKTNFYGTRDVCTELLP-LIKPG-GRVVNVSS 140
Cdd:PRK05866 123 NNAGrsIRRPLAESLDrWH-DVERTMVLNYYAPLRLIRGLAPgMLERGdGHIINVAT 178
KR_2_SDR_x cd08953
ketoreductase (KR), subgroup 2, complex (x) SDRs; Ketoreductase, a module of the multidomain ...
7-93 7.52e-13

ketoreductase (KR), subgroup 2, complex (x) SDRs; Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187656 [Multi-domain]  Cd Length: 436  Bit Score: 67.78  E-value: 7.52e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRDLCRRFSGDVVLTAR-----DEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEY 81
Cdd:cd08953  207 VYLVTGGAGGIGRALARALARRYGARLVLLGRsplppEEEWKAQTLAALEALGARVLYISADVTDAAAVRRLLEKVRERY 286
                         90
                 ....*....|..
gi 512960259  82 GGLDVLINNAGI 93
Cdd:cd08953  287 GAIDGVIHAAGV 298
PRK05872 PRK05872
short chain dehydrogenase; Provisional
6-152 8.88e-13

short chain dehydrogenase; Provisional


Pssm-ID: 235633 [Multi-domain]  Cd Length: 296  Bit Score: 66.92  E-value: 8.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLqaeGLSPRFHQL--DIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK05872  10 KVVVVTGAARGIGAELARRLHAR-GAKLALVDLEEAELAALAAEL---GGDDRVLTVvaDVTDLAAMQAAAEEAVERFGG 85
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  84 LDVLINNAGIA----FKMADPTPFhiqaEVTIKTNFYGTRDVCTELLP-LIKPGGRVVNVSSMTSLMALKGCSP 152
Cdd:PRK05872  86 IDVVVANAGIAsggsVAQVDPDAF----RRVIDVNLLGVFHTVRATLPaLIERRGYVLQVSSLAAFAAAPGMAA 155
SDR_c11 cd05364
classical (c) SDR, subgroup 11; SDRs are a functionally diverse family of oxidoreductases that ...
6-143 9.17e-13

classical (c) SDR, subgroup 11; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187622 [Multi-domain]  Cd Length: 253  Bit Score: 66.28  E-value: 9.17e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGfAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRK---EYG 82
Cdd:cd05364    4 KVAIITGSSSGIG-AGTAILFARLGARLALTGRDAERLEETRQSCLQAGVSEKKILLVVADLTEEEGQDRIISTtlaKFG 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  83 GLDVLINNAGIAFKMADPTPFHIQAEVTIKTNFYGTRDVCTELLP-LIKPGGRVVNVSSMTS 143
Cdd:cd05364   83 RLDILVNNAGILAKGGGEDQDIEEYDKVMNLNLRAVIYLTKLAVPhLIKTKGEIVNVSSVAG 144
PRK06179 PRK06179
short chain dehydrogenase; Provisional
1-140 9.73e-13

short chain dehydrogenase; Provisional


Pssm-ID: 235725 [Multi-domain]  Cd Length: 270  Bit Score: 66.46  E-value: 9.73e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSScSRVALVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARgraavqqlqAEGLSP-RFHQLDIDDLQSIRAVRDFLR 78
Cdd:PRK06179   1 MSN-SKVALVTGASSGIGRATAEKLARA--GyRVFGTSRNPAR---------AAPIPGvELLELDVTDDASVQAAVDEVI 68
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  79 KEYGGLDVLINNAGIAfkMADPTP-FHI-QAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSS 140
Cdd:PRK06179  69 ARAGRIDVLVNNAGVG--LAGAAEeSSIaQAQALFDTNVFGILRMTRAVLPHMRAqgSGRIINISS 132
PRK06172 PRK06172
SDR family oxidoreductase;
6-248 1.39e-12

SDR family oxidoreductase;


Pssm-ID: 180440 [Multi-domain]  Cd Length: 253  Bit Score: 65.93  E-value: 1.39e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06172   8 KVALVTGGAAGIGRATALAFARE-GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI---AFKMADPTPFHIQAEVTIktNFYGTRDVCTELLPLI--KPGGRVVNVSSMTSLMALKGcspelqqkfrs 160
Cdd:PRK06172  87 YAFNNAGIeieQGRLAEGSEAEFDAIMGV--NVKGVWLCMKYQIPLMlaQGGGAIVNTASVAGLGAAPK----------- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARklseERGGDKILLNACCPGWVRTDMAGPSA 240
Cdd:PRK06172 154 ------------------------------MSIYAASKHAVIGLTKSAAI----EYAKKGIRVNAVCPAVIDTDMFRRAY 199

                 ....*...
gi 512960259 241 TKSPEEGA 248
Cdd:PRK06172 200 EADPRKAE 207
PRK06701 PRK06701
short chain dehydrogenase; Provisional
7-145 1.92e-12

short chain dehydrogenase; Provisional


Pssm-ID: 235853 [Multi-domain]  Cd Length: 290  Bit Score: 65.82  E-value: 1.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRdLCRRFSGDVVLTARDEARGRAAVQQL-QAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06701  48 VALITGGDSGIGRAVAV-LFAKEGADIAIVYLDEHEDANETKQRvEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRLD 126
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  86 VLINNAgiAFK-----MADPTPFHIqaEVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTSLM 145
Cdd:PRK06701 127 ILVNNA--AFQypqqsLEDITAEQL--DKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYE 187
7_alpha_HSDH_SDR_c cd05365
7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs; This bacterial ...
7-260 2.07e-12

7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs; This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187623 [Multi-domain]  Cd Length: 242  Bit Score: 65.28  E-value: 2.07e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRDLCRrFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDV 86
Cdd:cd05365    1 VAIVTGGAAGIGKAIAGTLAK-AGASVVIADLKSEGAEAVAAAIQQAGGQAIGLECNVTSEQDLEAVVKATVSQFGGITI 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  87 LINNAGIAFKMADPTPFHI-QAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSlmalkgcspelqqkfrseti 163
Cdd:cd05365   80 LVNNAGGGGPKPFDMPMTEeDFEWAFKLNLFSAFRLSQLCAPHMQKagGGAILNISSMSS-------------------- 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 164 teeelvglmnkfvedtknkvhEKEGWPSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDMAGPSATKS 243
Cdd:cd05365  140 ---------------------ENKNVRIAAYGSSKAAVNHMT----RNLAFDLGPKGIRVNAVAPGAVKTDALASVLTPE 194
                        250
                 ....*....|....*....
gi 512960259 244 PEEG--AETPIYLALLPPD 260
Cdd:cd05365  195 IERAmlKHTPLGRLGEPED 213
PRK08628 PRK08628
SDR family oxidoreductase;
6-144 2.64e-12

SDR family oxidoreductase;


Pssm-ID: 181508 [Multi-domain]  Cd Length: 258  Bit Score: 64.98  E-value: 2.64e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLtARDeARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK08628   8 KVVIVTGGASGIGAAISLRLAEEGAIPVIF-GRS-APDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRID 85
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  86 VLINNAGI-----------AFkMAdptpfhiqaevTIKTN---FYGTRDVCtelLPLIKPG-GRVVNVSSMTSL 144
Cdd:PRK08628  86 GLVNNAGVndgvgleagreAF-VA-----------SLERNlihYYVMAHYC---LPHLKASrGAIVNISSKTAL 144
PRK08945 PRK08945
putative oxoacyl-(acyl carrier protein) reductase; Provisional
6-267 3.52e-12

putative oxoacyl-(acyl carrier protein) reductase; Provisional


Pssm-ID: 236357 [Multi-domain]  Cd Length: 247  Bit Score: 64.51  E-value: 3.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIG------FAitrdlcrRFSGDVVLTARDEARGRAAVQQLQAEG-LSPRFHQLDID--DLQSIRAVRDF 76
Cdd:PRK08945  13 RIILVTGAGDGIGreaaltYA-------RHGATVILLGRTEEKLEAVYDEIEAAGgPQPAIIPLDLLtaTPQNYQQLADT 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  77 LRKEYGGLDVLINNAGI-----AFKMADPTPFHIQAEVTIKTNFYGTRdvctELLPLIK--PGGRVVNVSSMtslmalkg 149
Cdd:PRK08945  86 IEEQFGRLDGVLHNAGLlgelgPMEQQDPEVWQDVMQVNVNATFMLTQ----ALLPLLLksPAASLVFTSSS-------- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 150 cspelqqkfrsetiteeelVGlmnkfvedtknkvHE-KEGWpsSAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCP 228
Cdd:PRK08945 154 -------------------VG-------------RQgRANW--GAYAVSKFATEGMMQV----LADEYQGTNLRVNCINP 195
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 512960259 229 GWVRTDMAG-------PSATKSPEEgaETPIYLALLPPDSRGPHGQ 267
Cdd:PRK08945 196 GGTRTAMRAsafpgedPQKLKTPED--IMPLYLYLMGDDSRRKNGQ 239
PRK06940 PRK06940
short chain dehydrogenase; Provisional
7-269 3.57e-12

short chain dehydrogenase; Provisional


Pssm-ID: 180766 [Multi-domain]  Cd Length: 275  Bit Score: 65.04  E-value: 3.57e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANkGIGFAITRdlcRRFSGDVVLTA-RDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRkEYGGLD 85
Cdd:PRK06940   4 VVVVIGAG-GIGQAIAR---RVGAGKKVLLAdYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ-TLGPVT 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIafkmadpTPFHIQAEVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTSLMaLKGCSPELQQKFrsETITE 165
Cdd:PRK06940  79 GLVHTAGV-------SPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHR-LPALTAEQERAL--ATTPT 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 166 EELVGLMNKFVEDTKNKVHekegwpssAYGVSKIGVTVLSRIHARKLSeERGGDkilLNACCPGWVRTDMA-----GPSA 240
Cdd:PRK06940 149 EELLSLPFLQPDAIEDSLH--------AYQIAKRANALRVMAEAVKWG-ERGAR---INSISPGIISTPLAqdelnGPRG 216
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 512960259 241 T-------KSPEEGAETPIYLALLPPDSRGPHGQFV 269
Cdd:PRK06940 217 DgyrnmfaKSPAGRPGTPDEIAALAEFLMGPRGSFI 252
PRK06953 PRK06953
SDR family oxidoreductase;
5-246 3.95e-12

SDR family oxidoreductase;


Pssm-ID: 180774 [Multi-domain]  Cd Length: 222  Bit Score: 63.94  E-value: 3.95e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLcRRFSGDVVLTARDEArGRAAVQQLQAEGlsprfHQLDIDDLQSIRAVRDFLRKEygGL 84
Cdd:PRK06953   1 MKTVLIVGASRGIGREFVRQY-RADGWRVIATARDAA-ALAALQALGAEA-----LALDVADPASVAGLAWKLDGE--AL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFKMAD--PTPFHIQAEVTIKTNFYGTRDVCTELLPLIKPGGRVVNV--SSMTSLMALKGCSpelqqkfrs 160
Cdd:PRK06953  72 DAAVYVAGVYGPRTEgvEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVlsSRMGSIGDATGTT--------- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkvhekeGWpssAYGVSKIGVTVLSRIHARklsEERGGDKILLNaccPGWVRTDMAGPSA 240
Cdd:PRK06953 143 ---------------------------GW---LYRASKAALNDALRAASL---QARHATCIALH---PGWVRTDMGGAQA 186

                 ....*.
gi 512960259 241 TKSPEE 246
Cdd:PRK06953 187 ALDPAQ 192
PRK07060 PRK07060
short chain dehydrogenase; Provisional
6-236 4.69e-12

short chain dehydrogenase; Provisional


Pssm-ID: 180817 [Multi-domain]  Cd Length: 245  Bit Score: 64.35  E-value: 4.69e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSprfhqLDIDDLQSIRAVRDflrkEYGGLD 85
Cdd:PRK07060  10 KSVLVTGASSGIGRACAVALAQR-GARVVAAARNAAALDRLAGETGCEPLR-----LDVGDDAAIRAALA----AAGAFD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIKPGGR---VVNVSSMTSLMALkgcsPELqqkfrset 162
Cdd:PRK07060  80 GLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRggsIVNVSSQAALVGL----PDH-------- 147
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259 163 iteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTDMA 236
Cdd:PRK07060 148 -----------------------------LAYCASKAALDAITRVLCVEL----GPHGIRVNSVNPTVTLTPMA 188
fabG PRK06077
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-235 4.72e-12

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 235693 [Multi-domain]  Cd Length: 252  Bit Score: 64.36  E-value: 4.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06077   7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGVAD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA----FKMADPTPFHIQAEVTIKTNFYgtrdvCT-ELLPLIKPGGRVVNVSSmtslmaLKGCSPelqqkfrs 160
Cdd:PRK06077  87 ILVNNAGLGlfspFLNVDDKLIDKHISTDFKSVIY-----CSqELAKEMREGGAIVNIAS------VAGIRP-------- 147
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259 161 etiteeeLVGLmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLSEerggdKILLNACCPGWVRTDM 235
Cdd:PRK06077 148 -------AYGL--------------------SIYGAMKAAVINLTKYLALELAP-----KIRVNAIAPGFVKTKL 190
mannonate_red_SDR_c cd08935
putative D-mannonate oxidoreductase, classical (c) SDR; D-mannonate oxidoreductase catalyzes ...
6-147 5.87e-12

putative D-mannonate oxidoreductase, classical (c) SDR; D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187640 [Multi-domain]  Cd Length: 271  Bit Score: 64.40  E-value: 5.87e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd08935    6 KVAVITGGTGVLGGAMARALAQA-GAKVAALGRNQEKGDKVAKEITALGGRAIALAADVLDRASLERAREEIVAQFGTVD 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMADPTPFHIQAEVTikTNFYGTRDVCTE----------LLP--------LIKPGGRVVNVSSMTSLMAL 147
Cdd:cd08935   85 ILINGAGGNHPDATTDPEHYEPETE--QNFFDLDEEGWEfvfdlnlngsFLPsqvfgkdmLEQKGGSIINISSMNAFSPL 162
PRK08219 PRK08219
SDR family oxidoreductase;
6-140 9.04e-12

SDR family oxidoreductase;


Pssm-ID: 181298 [Multi-domain]  Cd Length: 227  Bit Score: 63.03  E-value: 9.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFsgDVVLTARDEARGRAAVQQL-QAEGLsprfhQLDIDDLQSIRAVRDFLrkeyGGL 84
Cdd:PRK08219   4 PTALITGASRGIGAAIARELAPTH--TLLLGGRPAERLDELAAELpGATPF-----PVDLTDPEAIAAAVEQL----GRL 72
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  85 DVLINNAGIafkmADPTPFhiqAEVTIKT-------NFYGTRDVCTELLPLIK-PGGRVVNVSS 140
Cdd:PRK08219  73 DVLVHNAGV----ADLGPV---AESTVDEwratlevNVVAPAELTRLLLPALRaAHGHVVFINS 129
PRK12935 PRK12935
acetoacetyl-CoA reductase; Provisional
6-235 9.48e-12

acetoacetyl-CoA reductase; Provisional


Pssm-ID: 183832 [Multi-domain]  Cd Length: 247  Bit Score: 63.48  E-value: 9.48e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK12935   7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGKVD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI----AFKMADPTPFhiqaEVTIKTNFYGTRDVCTELLPLI--KPGGRVVNVSSMtslmalkgcspelqqkfr 159
Cdd:PRK12935  87 ILVNNAGItrdrTFKKLNREDW----ERVIDVNLSSVFNTTSAVLPYIteAEEGRIISISSI------------------ 144
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259 160 setiteeelvglmnkfvedtknkVHEKEGWPSSAYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTDM 235
Cdd:PRK12935 145 -----------------------IGQAGGFGQTNYSAAKAGMLGFTKSLALELAKT----NVTVNAICPGFIDTEM 193
PRK08017 PRK08017
SDR family oxidoreductase;
9-149 1.05e-11

SDR family oxidoreductase;


Pssm-ID: 181198 [Multi-domain]  Cd Length: 256  Bit Score: 63.57  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfsGDVVLTArdeARGRAAVQQLQAEGLSPRfhQLDIDDLQSI-RAVRDFLRKEYGGLDVL 87
Cdd:PRK08017   6 LITGCSSGIGLEAALELKRR--GYRVLAA---CRKPDDVARMNSLGFTGI--LLDLDDPESVeRAADEVIALTDNRLYGL 78
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  88 INNAGiaFKMADP--TPFHIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMALKG 149
Cdd:PRK08017  79 FNNAG--FGVYGPlsTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPhgEGRIVMTSSVMGLISTPG 142
PRK07478 PRK07478
short chain dehydrogenase; Provisional
6-255 1.10e-11

short chain dehydrogenase; Provisional


Pssm-ID: 180993 [Multi-domain]  Cd Length: 254  Bit Score: 63.41  E-value: 1.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07478   7 KVAIITGASSGIGRAAAK-LFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGLD 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMADPTPFHIQA-EVTIKTN----FYGTRDVCTELLPliKPGGRVVNVSSmtslmalkgcspelqqkfrs 160
Cdd:PRK07478  86 IAFNNAGTLGEMGPVAEMSLEGwRETLATNltsaFLGAKHQIPAMLA--RGGGSLIFTST-------------------- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkFVEDTKnkvhekeGWPS-SAYGVSKIGVTVLSRIharkLSEERGGDKILLNACCPGWVRTDM---- 235
Cdd:PRK07478 144 --------------FVGHTA-------GFPGmAAYAASKAGLIGLTQV----LAAEYGAQGIRVNALLPGGTDTPMgram 198
                        250       260       270
                 ....*....|....*....|....*....|...
gi 512960259 236 ----------AGPSATK---SPEEGAETPIYLA 255
Cdd:PRK07478 199 gdtpealafvAGLHALKrmaQPEEIAQAALFLA 231
PRK06935 PRK06935
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
6-238 1.51e-11

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 180761 [Multi-domain]  Cd Length: 258  Bit Score: 62.83  E-value: 1.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSG-DVVLTAR----DEARgraavQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKE 80
Cdd:PRK06935  16 KVAIVTGGNTGLGQGYAVALAK--AGaDIIITTHgtnwDETR-----RLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  81 YGGLDVLINNAGI-------AFKMADptpFHIQAEVTIKTNFYGTRDVCTEllpLIKPG-GRVVNVSSMTSLMAlkgcsp 152
Cdd:PRK06935  89 FGKIDILVNNAGTirrapllEYKDED---WNAVMDINLNSVYHLSQAVAKV---MAKQGsGKIINIASMLSFQG------ 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 153 elqqkfrsetiteeelvglmNKFVedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVR 232
Cdd:PRK06935 157 --------------------GKFV---------------PAYTASKHGVAGLTKAFANELAAY----NIQVNAIAPGYIK 197

                 ....*.
gi 512960259 233 TDMAGP 238
Cdd:PRK06935 198 TANTAP 203
type2_17beta_HSD-like_SDR_c cd09805
human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs; ...
9-147 1.53e-11

human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187665 [Multi-domain]  Cd Length: 281  Bit Score: 63.07  E-value: 1.53e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfsGDVVLtardeargrAAVQQLQ---AEGL----SPRFH--QLDIDDLQSIRAVRDFLRK 79
Cdd:cd09805    4 LITGCDSGFGNLLAKKLDSL--GFTVL---------AGCLTKNgpgAKELrrvcSDRLRtlQLDVTKPEQIKRAAQWVKE 72
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512960259  80 EYG--GLDVLINNAGIA--FKMADPTPFHIQAEVtIKTNFYGTRDVCTELLPLIKPG-GRVVNVSSMTSLMAL 147
Cdd:cd09805   73 HVGekGLWGLVNNAGILgfGGDEELLPMDDYRKC-MEVNLFGTVEVTKAFLPLLRRAkGRVVNVSSMGGRVPF 144
PRK08265 PRK08265
short chain dehydrogenase; Provisional
6-91 1.57e-11

short chain dehydrogenase; Provisional


Pssm-ID: 236209 [Multi-domain]  Cd Length: 261  Bit Score: 63.10  E-value: 1.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLcRRFSGDVVLTARDEARGRAAVQQLqaeGLSPRFHQLDIDDLQSI-RAVRDFLRKeYGGL 84
Cdd:PRK08265   7 KVAIVTGGATLIGAAVARAL-VAAGARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIeRAVATVVAR-FGRV 81

                 ....*..
gi 512960259  85 DVLINNA 91
Cdd:PRK08265  82 DILVNLA 88
PRK08267 PRK08267
SDR family oxidoreductase;
9-140 1.82e-11

SDR family oxidoreductase;


Pssm-ID: 236210 [Multi-domain]  Cd Length: 260  Bit Score: 62.65  E-value: 1.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRdlcrRFSGD---VVLTARDEARGRAAVQQLQAEGLSprFHQLDIDDLQSI-RAVRDFLRKEYGGL 84
Cdd:PRK08267   5 FITGAASGIGRATAL----LFAAEgwrVGAYDINEAGLAALAAELGAGNAW--TGALDVTDRAAWdAALADFAAATGGRL 78
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  85 DVLINNAGI----AFKMADPTpfhiQAEVTIKTNFYGTRDVCTELLPLIK--PGGRVVNVSS 140
Cdd:PRK08267  79 DVLFNNAGIlrggPFEDIPLE----AHDRVIDINVKGVLNGAHAALPYLKatPGARVINTSS 136
PRK06482 PRK06482
SDR family oxidoreductase;
5-151 1.85e-11

SDR family oxidoreductase;


Pssm-ID: 235813 [Multi-domain]  Cd Length: 276  Bit Score: 62.83  E-value: 1.85e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfsGD-VVLTARDEArgraAVQQLQAE-GLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK06482   2 SKTWFITGASSGFGRGMTERLLAR--GDrVAATVRRPD----ALDDLKARyGDRLWVLQLDVTDSAAVRAVVDRAFAALG 75
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  83 GLDVLINNAGIAFKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMALKGCS 151
Cdd:PRK06482  76 RIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRqgGGRIVQVSSEGGQIAYPGFS 146
PRK06057 PRK06057
short chain dehydrogenase; Provisional
6-248 2.00e-11

short chain dehydrogenase; Provisional


Pssm-ID: 180371 [Multi-domain]  Cd Length: 255  Bit Score: 62.44  E-value: 2.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdlcrRFSGD---VVLTARDEARGRAAVQQLqaEGLsprFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK06057   8 RVAVITGGGSGIGLATAR----RLAAEgatVVVGDIDPEAGKAAADEV--GGL---FVPTDVTDEDAVNALFDTAAETYG 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGIA------FKMADPTPFHIQAEVTIKTNFYgtrdVCTELLPLIKPGGR--VVNVSSMTSLMalkgcspel 154
Cdd:PRK06057  79 SVDIAFNNAGISppeddsILNTGLDAWQRVQDVNLTSVYL----CCKAALPHMVRQGKgsIINTASFVAVM--------- 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 155 qqkfrsetiteeelvglmnkfvedtknkvhekeGWPSS--AYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVR 232
Cdd:PRK06057 146 ---------------------------------GSATSqiSYTASKGGVLAMS----RELGVQFARQGIRVNALCPGPVN 188
                        250
                 ....*....|....*.
gi 512960259 233 TDMAGPSATKSPEEGA 248
Cdd:PRK06057 189 TPLLQELFAKDPERAA 204
DR_C-13_KR_SDR_c_like cd08951
daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs; Daunorubicin is a clinically ...
5-255 2.55e-11

daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs; Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187654 [Multi-domain]  Cd Length: 260  Bit Score: 62.51  E-value: 2.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVaLVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGrAAVQQLQAEGLSprfhqLDIDDLQSIRAVRDFLRK--EYG 82
Cdd:cd08951    8 KRI-FITGSSDGLGLAAARTLLHQ-GHEVVLHARSQKRA-ADAKAACPGAAG-----VLIGDLSSLAETRKLADQvnAIG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGIafkMADP----TPFHIQAEVTIKTnfygtrdVCTELLP-LIKPGGRVVNVSSMtslMALKGcspelqqk 157
Cdd:cd08951   80 RFDAVIHNAGI---LSGPnrktPDTGIPAMVAVNV-------LAPYVLTaLIRRPKRLIYLSSG---MHRGG-------- 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 frsetitEEELVGLmnkfveDTKNKVhekeGWPSSAYGVSKIGVTVLSRIHARKLSeerggdKILLNACCPGWVRTDMAG 237
Cdd:cd08951  139 -------NASLDDI------DWFNRG----ENDSPAYSDSKLHVLTLAAAVARRWK------DVSSNAVHPGWVPTKMGG 195
                        250
                 ....*....|....*...
gi 512960259 238 PSATKSPEEGAETPIYLA 255
Cdd:cd08951  196 AGAPDDLEQGHLTQVWLA 213
PRK06114 PRK06114
SDR family oxidoreductase;
6-235 3.50e-11

SDR family oxidoreductase;


Pssm-ID: 180408 [Multi-domain]  Cd Length: 254  Bit Score: 61.72  E-value: 3.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAA-VQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK06114   9 QVAFVTGAGSGIGQRIAIGLAQA-GADVALFDLRTDDGLAEtAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGAL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMtslmalkgcspelqqkfrSET 162
Cdd:PRK06114  88 TLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLEngGGSIVNIASM------------------SGI 149
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259 163 ITEEELvglmnkfvedtkNKVHekegwpssaYGVSKIGVtvlsrIHARK-LSEERGGDKILLNACCPGWVRTDM 235
Cdd:PRK06114 150 IVNRGL------------LQAH---------YNASKAGV-----IHLSKsLAMEWVGRGIRVNSISPGYTATPM 197
secoisolariciresinol-DH_like_SDR_c cd05326
secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs; ...
6-260 4.05e-11

secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs; Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187587 [Multi-domain]  Cd Length: 249  Bit Score: 61.70  E-value: 4.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSprFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05326    5 KVAIITGGASGIGEATAR-LFAKHGARVVIADIDDDAGQAVAAELGDPDIS--FVHCDVTVEADVRAAVDTAVARFGRLD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI----AFKMADPT--PFHIQAEVTIKTNFYGTRDVCTELLPLIKpgGRVVNVSSMTSLMAlkgcspelqqkfr 159
Cdd:cd05326   82 IMFNNAGVlgapCYSILETSleEFERVLDVNVYGAFLGTKHAARVMIPAKK--GSIVSVASVAGVVG------------- 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 160 setiteeelvglmnkfvedtknkvhekeGWPSSAYGVSKIGVTVLSRIHARKLSEERggdkILLNACCPGWVRTDMAG-- 237
Cdd:cd05326  147 ----------------------------GLGPHAYTASKHAVLGLTRSAATELGEHG----IRVNCVSPYGVATPLLTag 194
                        250       260
                 ....*....|....*....|....*..
gi 512960259 238 ----PSATKSPEEGAETPIYLALLPPD 260
Cdd:cd05326  195 fgveDEAIEEAVRGAANLKGTALRPED 221
type1_17beta-HSD-like_SDR_c cd09806
human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, ...
6-147 4.77e-11

human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs; 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187666 [Multi-domain]  Cd Length: 258  Bit Score: 61.71  E-value: 4.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAI----TRDLCRRFSgdVVLTARDEARGRAAVQQLQAE-GLSPRFHQLDIDDLQSIRAVRDFLRKe 80
Cdd:cd09806    1 TVVLITGCSSGIGLHLavrlASDPSKRFK--VYATMRDLKKKGRLWEAAGALaGGTLETLQLDVCDSKSVAAAVERVTE- 77
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512960259  81 yGGLDVLINNAGIAFkMAdptPFHIQAEVTIK----TNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMAL 147
Cdd:cd09806   78 -RHVDVLVCNAGVGL-LG---PLEALSEDAMAsvfdVNVFGTVRMLQAFLPDMKRrgSGRILVTSSVGGLQGL 145
PRK07067 PRK07067
L-iditol 2-dehydrogenase;
6-98 5.00e-11

L-iditol 2-dehydrogenase;


Pssm-ID: 235925 [Multi-domain]  Cd Length: 257  Bit Score: 61.58  E-value: 5.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAItrdlCRRFSGD---VVLTARDEARGRAAVQQLQAEGLSPRfhqLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK07067   7 KVALLTGAASGIGEAV----AERYLAEgarVVIADIKPARARLAALEIGPAAIAVS---LDVTRQDSIDRIVAAAVERFG 79
                         90
                 ....*....|....*.
gi 512960259  83 GLDVLINNAGIaFKMA 98
Cdd:PRK07067  80 GIDILFNNAAL-FDMA 94
PRK08589 PRK08589
SDR family oxidoreductase;
5-146 6.18e-11

SDR family oxidoreductase;


Pssm-ID: 181491 [Multi-domain]  Cd Length: 272  Bit Score: 61.33  E-value: 6.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfsGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK08589   6 NKVAVITGASTGIGQASAIALAQE--GAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV 83
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  85 DVLINNAGIAFKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPL-IKPGGRVVNVSSMTSLMA 146
Cdd:PRK08589  84 DVLFNNAGVDNAAGRIHEYPVDVfDKIMAVDMRGTFLMTKMLLPLmMEQGGSIINTSSFSGQAA 147
PRK09730 PRK09730
SDR family oxidoreductase;
7-149 7.54e-11

SDR family oxidoreductase;


Pssm-ID: 182051 [Multi-domain]  Cd Length: 247  Bit Score: 61.02  E-value: 7.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDV 86
Cdd:PRK09730   3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAA 82
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  87 LINNAGIAFKMAdpTPFHIQAE---VTIKTNFYGTRDVCTELLPLIK-----PGGRVVNVSSMTSLMALKG 149
Cdd:PRK09730  83 LVNNAGILFTQC--TVENLTAErinRVLSTNVTGYFLCCREAVKRMAlkhggSGGAIVNVSSAASRLGAPG 151
PRK08085 PRK08085
gluconate 5-dehydrogenase; Provisional
8-93 9.50e-11

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 181225 [Multi-domain]  Cd Length: 254  Bit Score: 60.54  E-value: 9.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRrFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVL 87
Cdd:PRK08085  12 ILITGSAQGIGFLLATGLAE-YGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVL 90

                 ....*.
gi 512960259  88 INNAGI 93
Cdd:PRK08085  91 INNAGI 96
R1PA_ADH_SDR_c cd08943
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs; This family has ...
6-232 9.59e-11

rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs; This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187647 [Multi-domain]  Cd Length: 250  Bit Score: 60.48  E-value: 9.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAvqqlQAEGLSPRFH--QLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:cd08943    2 KVALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAEKVA----EAAQGGPRALgvQCDVTSEAQVQSAFEQAVLEFGG 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAFkmadPTPFhiqAEVTIKT-------NFYGTRDVCTELLPLIKP---GGRVVNVSSmtslmalkgcspe 153
Cdd:cd08943   78 LDIVVSNAGIAT----SSPI---AETSLEDwnrsmdiNLTGHFLVSREAFRIMKSqgiGGNIVFNAS------------- 137
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 154 lqqkfrsetiteeelvglmnkfvedtKNKVHekEGWPSSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVR 232
Cdd:cd08943  138 --------------------------KNAVA--PGPNAAAYSAAKAAEAHL----ARCLALEGGEDGIRVNTVNPDAVF 184
RDH_SDR_c cd08933
retinal dehydrogenase-like, classical (c) SDR; These classical SDRs includes members ...
6-157 1.05e-10

retinal dehydrogenase-like, classical (c) SDR; These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187638 [Multi-domain]  Cd Length: 261  Bit Score: 60.63  E-value: 1.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSgDVVLTARDEARGRAAVQQLQAEGL-SPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:cd08933   10 KVVIVTGGSRGIGRGIVRAFVENGA-KVVFCARGEAAGQALESELNRAGPgSCKFVPCDVTKEEDIKTLISVTVERFGRI 88
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  85 DVLINNAGiafkMADP--TPFHIQAE---VTIKTNFYGTRDVCTELLP-LIKPGGRVVNVSSMTSLMALKGCSPELQQK 157
Cdd:cd08933   89 DCLVNNAG----WHPPhqTTDETSAQefrDLLNLNLISYFLASKYALPhLRKSQGNIINLSSLVGSIGQKQAAPYVATK 163
BKR_2_SDR_c cd05349
putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) ...
6-140 1.28e-10

putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR; This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187607 [Multi-domain]  Cd Length: 246  Bit Score: 60.16  E-value: 1.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFhqlDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05349    1 QVVLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEAGERAIAIQA---DVRDRDQVQAMIEEAKNHFGPVD 77
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512960259  86 VLINNAGIAFK---MADPTP-------FHIQAEVTIKtnfyGTRDVCTELLPLIKP--GGRVVNVSS 140
Cdd:cd05349   78 TIVNNALIDFPfdpDQRKTFdtidwedYQQQLEGAVK----GALNLLQAVLPDFKErgSGRVINIGT 140
XR_like_SDR_c cd05351
xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins ...
4-235 1.45e-10

xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187609 [Multi-domain]  Cd Length: 244  Bit Score: 59.79  E-value: 1.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   4 CSRVALVTGANKGIGFAITRDLCRrfSGDVVLTArdeARGRAAVQQLQAE--GLSPRfhQLDIDDLQsirAVRDFLRKeY 81
Cdd:cd05351    6 AGKRALVTGAGKGIGRATVKALAK--AGARVVAV---SRTQADLDSLVREcpGIEPV--CVDLSDWD---ATEEALGS-V 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 GGLDVLINNAGIA----FKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIKPGGrVVNVSSMTSLMALKGcspelqqk 157
Cdd:cd05351   75 GPVDLLVNNAAVAilqpFLEVTKEAFDRSFDVNVRAVIHVSQIVARGMIARGVPGS-IVNVSSQASQRALTN-------- 145
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259 158 frsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTDM 235
Cdd:cd05351  146 ---------------------------------HTVYCSTKAALDMLTKVMALEL----GPHKIRVNSVNPTVVMTDM 186
PRK07062 PRK07062
SDR family oxidoreductase;
6-153 1.61e-10

SDR family oxidoreductase;


Pssm-ID: 180818 [Multi-domain]  Cd Length: 265  Bit Score: 60.06  E-value: 1.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAiTRDLCRRFSGDVVLTARDEARGRAAVQQL-----QAEGLSPRFHQLDIDDLQS-IRAVRDflrk 79
Cdd:PRK07062   9 RVAVVTGGSSGIGLA-TVELLLEAGASVAICGRDEERLASAEARLrekfpGARLLAARCDVLDEADVAAfAAAVEA---- 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259  80 EYGGLDVLINNAGIAF--KMADPTPFHIQAEVTIKtnFYGTRDVCTELLPLIK--PGGRVVNVSsmtSLMALKgcsPE 153
Cdd:PRK07062  84 RFGGVDMLVNNAGQGRvsTFADTTDDAWRDELELK--YFSVINPTRAFLPLLRasAAASIVCVN---SLLALQ---PE 153
human_WWOX_like_SDR_c-like cd09809
human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs; Classical-like ...
6-258 1.63e-10

human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs; Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187669 [Multi-domain]  Cd Length: 284  Bit Score: 60.30  E-value: 1.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIdDLQSIRAVRDF---LRKEYG 82
Cdd:cd09809    2 KVIIITGANSGIGFETARSFALH-GAHVILACRNMSRASAAVSRILEEWHKARVEAMTL-DLASLRSVQRFaeaFKAKNS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGIafkMADPTPFHIQA-EVTIKTN----FYGTRdVCTELLPLIKPgGRVVNVSSMTslmalkgcspelqQK 157
Cdd:cd09809   80 PLHVLVCNAAV---FALPWTLTEDGlETTFQVNhlghFYLVQ-LLEDVLRRSAP-ARVIVVSSES-------------HR 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 FrseTITEEELVGLMNKFVEDTKNKVhekegWPSSAYGVSKIGVTVLSRIHARKLSeERGgdkILLNACCPG-------- 229
Cdd:cd09809  142 F---TDLPDSCGNLDFSLLSPPKKKY-----WSMLAYNRAKLCNILFSNELHRRLS-PRG---ITSNSLHPGnmmyssih 209
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 512960259 230 ---WVRT---DMAGPsATKSPEEGAETPIYLALLP 258
Cdd:cd09809  210 rnwWVYTllfTLARP-FTKSMQQGAATTVYCATAP 243
PRK06947 PRK06947
SDR family oxidoreductase;
5-252 1.71e-10

SDR family oxidoreductase;


Pssm-ID: 180771 [Multi-domain]  Cd Length: 248  Bit Score: 59.82  E-value: 1.71e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRdLCRRFSGDVVLT-ARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK06947   2 RKVVLITGASRGIGRATAV-LAAARGWSVGINyARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGI---AFKMADPTPFHIQAevTIKTNFYGTRDVCTELLPLIKP-----GGRVVNVSSMTSLMAlkgcSPelq 155
Cdd:PRK06947  81 LDALVNNAGIvapSMPLADMDAARLRR--MFDTNVLGAYLCAREAARRLSTdrggrGGAIVNVSSIASRLG----SP--- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeelvglmNKFVEdtknkvhekegwpssaYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDM 235
Cdd:PRK06947 152 -----------------NEYVD----------------YAGSKGAVDTLT----LGLAKELGPHGVRVNAVRPGLIETEI 194
                        250
                 ....*....|....*....
gi 512960259 236 --AGPSATKSPEEGAETPI 252
Cdd:PRK06947 195 haSGGQPGRAARLGAQTPL 213
PRK08277 PRK08277
D-mannonate oxidoreductase; Provisional
6-147 1.74e-10

D-mannonate oxidoreductase; Provisional


Pssm-ID: 236216 [Multi-domain]  Cd Length: 278  Bit Score: 59.91  E-value: 1.74e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK08277  11 KVAVITGGGGVLGGAMAKELARA-GAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCD 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMADPTPFHIQAEVTIKT---------------NFYGTrdvcteLLP--------LIKPGGRVVNVSSMT 142
Cdd:PRK08277  90 ILINGAGGNHPKATTDNEFHELIEPTKTffdldeegfefvfdlNLLGT------LLPtqvfakdmVGRKGGNIINISSMN 163

                 ....*
gi 512960259 143 SLMAL 147
Cdd:PRK08277 164 AFTPL 168
PRK08936 PRK08936
glucose-1-dehydrogenase; Provisional
6-233 1.99e-10

glucose-1-dehydrogenase; Provisional


Pssm-ID: 181585 [Multi-domain]  Cd Length: 261  Bit Score: 59.74  E-value: 1.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdlcrRFSGD---VVLTAR-DEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEY 81
Cdd:PRK08936   8 KVVVITGGSTGLGRAMAV----RFGKEkakVVINYRsDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 GGLDVLINNAGiafkMADPTPFHiqaEVT-------IKTN----FYGTRDVCTELLPLIKPGGrVVNVSSmtslmalkgc 150
Cdd:PRK08936  84 GTLDVMINNAG----IENAVPSH---EMSledwnkvINTNltgaFLGSREAIKYFVEHDIKGN-IINMSS---------- 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 151 spelqqkfrsetiteeelvglmnkfvedtknkVHEKEGWPSSA-YGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPG 229
Cdd:PRK08936 146 --------------------------------VHEQIPWPLFVhYAASKGGVKLMT----ETLAMEYAPKGIRVNNIGPG 189

                 ....
gi 512960259 230 WVRT 233
Cdd:PRK08936 190 AINT 193
PRK08063 PRK08063
enoyl-[acyl-carrier-protein] reductase FabL;
6-148 2.26e-10

enoyl-[acyl-carrier-protein] reductase FabL;


Pssm-ID: 236145 [Multi-domain]  Cd Length: 250  Bit Score: 59.35  E-value: 2.26e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK08063   5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGRLD 84
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNA--GI---AFKMADPtpfhiQAEVTIKTNFYGTRDVCTELLPLI--KPGGRVVNVSSMTSLMALK 148
Cdd:PRK08063  85 VFVNNAasGVlrpAMELEES-----HWDWTMNINAKALLFCAQEAAKLMekVGGGKIISLSSLGSIRYLE 149
PRK08220 PRK08220
2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
6-140 2.44e-10

2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated


Pssm-ID: 236190 [Multi-domain]  Cd Length: 252  Bit Score: 59.51  E-value: 2.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsGDVVlTARDEARgraavqqLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK08220   9 KTVWVTGAAQGIGYAVALAFVEA--GAKV-IGFDQAF-------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLD 78
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259  86 VLINNAGIaFKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSS 140
Cdd:PRK08220  79 VLVNAAGI-LRMGATDSLSDEDwQQTFAVNAGGAFNLFRAVMPQFRRqrSGAIVTVGS 135
PRK06125 PRK06125
short chain dehydrogenase; Provisional
5-92 2.68e-10

short chain dehydrogenase; Provisional


Pssm-ID: 235703 [Multi-domain]  Cd Length: 259  Bit Score: 59.29  E-value: 2.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRFSGdVVLTARDEARGRAAVQQLQAE-GLSPRFHQLDIDDLQSiravRDFLRKEYGG 83
Cdd:PRK06125   7 GKRVLITGASKGIGAAAAEAFAAEGCH-LHLVARDADALEALAADLRAAhGVDVAVHALDLSSPEA----REQLAAEAGD 81

                 ....*....
gi 512960259  84 LDVLINNAG 92
Cdd:PRK06125  82 IDILVNNAG 90
BKR_3_SDR_c cd05345
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) ...
6-144 2.81e-10

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR; This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187603 [Multi-domain]  Cd Length: 248  Bit Score: 59.33  E-value: 2.81e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdlcrRFSGD---VVLTARDEARGRAAVQQLqaeGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:cd05345    6 KVAIVTGAGSGFGEGIAR----RFAQEgarVVIADINADGAERVAADI---GEAAIAIQADVTKRADVEAMVEAALSKFG 78
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512960259  83 GLDVLINNAGIAFK---MADPTP--FHIQAEVTIKTNFYGTRDVCTELLPliKPGGRVVNVSSMTSL 144
Cdd:cd05345   79 RLDILVNNAGITHRnkpMLEVDEeeFDRVFAVNVKSIYLSAQALVPHMEE--QGGGVIINIASTAGL 143
17beta-HSD1_like_SDR_c cd05356
17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) ...
6-145 3.12e-10

17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs; This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187614 [Multi-domain]  Cd Length: 239  Bit Score: 58.77  E-value: 3.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAE-GLSPRFHQLDIDDLQSIravRDFLRKEYGGL 84
Cdd:cd05356    2 TWAVVTGATDGIGKAYAEELAKR-GFNVILISRTQEKLDAVAKEIEEKyGVETKTIAADFSAGDDI---YERIEKELEGL 77
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  85 DV--LINNAGIAFKMadPTPFHiqaEV-------TIKTNFYGTRDVCTELLP--LIKPGGRVVNVSSMTSLM 145
Cdd:cd05356   78 DIgiLVNNVGISHSI--PEYFL---ETpedelqdIINVNVMATLKMTRLILPgmVKRKKGAIVNISSFAGLI 144
fabG PRK08261
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-274 5.00e-10

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 236207 [Multi-domain]  Cd Length: 450  Bit Score: 59.46  E-value: 5.00e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLcrrfsgdvvltARDEAR--------GRAAVQQLqAEGLSPRFHQLDIDDLQSIRAVRDFL 77
Cdd:PRK08261 211 KVALVTGAARGIGAAIAEVL-----------ARDGAHvvcldvpaAGEALAAV-ANRVGGTALALDITAPDAPARIAEHL 278
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  78 RKEYGGLDVLINNAGI------AfKMADPT-----PFHIQAEVTIktnfygtrdvcTELL---PLIKPGGRVVNVSSMTs 143
Cdd:PRK08261 279 AERHGGLDIVVHNAGItrdktlA-NMDEARwdsvlAVNLLAPLRI-----------TEALlaaGALGDGGRIVGVSSIS- 345
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 144 lmalkGCSPELQQkfrsetiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARKLsEERGgdkILL 223
Cdd:PRK08261 346 -----GIAGNRGQ-----------------------------------TNYAASKAGVIGLVQALAPLL-AERG---ITI 381
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259 224 NACCPGWVRTDM--AGPSATK-------------SPEEGAETPIYLAllPPDSRGPHGQFVqekRV 274
Cdd:PRK08261 382 NAVAPGFIETQMtaAIPFATReagrrmnslqqggLPVDVAETIAWLA--SPASGGVTGNVV---RV 442
fabG PRK08217
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
7-93 5.51e-10

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181297 [Multi-domain]  Cd Length: 253  Bit Score: 58.43  E-value: 5.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDV 86
Cdd:PRK08217   7 VIVITGGAQGLGRAMAEYLAQK-GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLNG 85

                 ....*..
gi 512960259  87 LINNAGI 93
Cdd:PRK08217  86 LINNAGI 92
PRK07097 PRK07097
gluconate 5-dehydrogenase; Provisional
6-143 5.78e-10

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 235933 [Multi-domain]  Cd Length: 265  Bit Score: 58.54  E-value: 5.78e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07097  11 KIALITGASYGIGFAIAKAYAKA-GATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVID 89
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  86 VLINNAGIAFKmadpTPFH-IQAE---VTIKTNFYGTRDVCTELLP-LIKPG-GRVVNVSSMTS 143
Cdd:PRK07097  90 ILVNNAGIIKR----IPMLeMSAEdfrQVIDIDLNAPFIVSKAVIPsMIKKGhGKIINICSMMS 149
PRK07831 PRK07831
SDR family oxidoreductase;
6-140 6.16e-10

SDR family oxidoreductase;


Pssm-ID: 236110 [Multi-domain]  Cd Length: 262  Bit Score: 58.51  E-value: 6.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGA-NKGIGFAITRDlCRRFSGDVVLTARDEARGRAAVQQLQAE-GLSPRFHQL-DIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK07831  18 KVVLVTAAaGTGIGSATARR-ALEEGARVVISDIHERRLGETADELAAElGLGRVEAVVcDVTSEAQVDALIDAAVERLG 96
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  83 GLDVLINNAGIA-----FKMADPTPFHIqAEVTIKTNFYGTRdvctELLPLIKP---GGRVVNVSS 140
Cdd:PRK07831  97 RLDVLVNNAGLGgqtpvVDMTDDEWSRV-LDVTLTGTFRATR----AALRYMRArghGGVIVNNAS 157
SDR_c3 cd05360
classical (c) SDR, subgroup 3; These proteins are members of the classical SDR family, with a ...
6-144 6.38e-10

classical (c) SDR, subgroup 3; These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187618 [Multi-domain]  Cd Length: 233  Bit Score: 57.78  E-value: 6.38e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSgDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05360    1 QVVVITGASSGIGRATALAFAERGA-KVVLAARSAEALHELAREVRELGGEAIAVVADVADAAQVERAADTAVERFGRID 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  86 VLINNAGIA-FKMADPTPFHIQAEVTiKTNF----YGTRDVctelLPLIKP--GGRVVNVSSMTSL 144
Cdd:cd05360   80 TWVNNAGVAvFGRFEDVTPEEFRRVF-DVNYlghvYGTLAA----LPHLRRrgGGALINVGSLLGY 140
benD PRK12823
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
6-140 6.88e-10

1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional


Pssm-ID: 183772 [Multi-domain]  Cd Length: 260  Bit Score: 58.03  E-value: 6.88e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEArgraaVQQLQAEGLSPRFHQL----DIDDLQSIRAVRDFLRKEY 81
Cdd:PRK12823   9 KVVVVTGAAQGIGRGVALRAAAE-GARVVLVDRSEL-----VHEVAAELRAAGGEALaltaDLETYAGAQAAMAAAVEAF 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  82 GGLDVLINNAGIAFKM---ADPTPFHIQAEvtIKTNFYGTRDVCTELLP-LIKPG-GRVVNVSS 140
Cdd:PRK12823  83 GRIDVLINNVGGTIWAkpfEEYEEEQIEAE--IRRSLFPTLWCCRAVLPhMLAQGgGAIVNVSS 144
PRK10538 PRK10538
bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase ...
7-140 8.96e-10

bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG;


Pssm-ID: 182531 [Multi-domain]  Cd Length: 248  Bit Score: 57.84  E-value: 8.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARgraaVQQLQAEgLSPRFH--QLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK10538   2 IVLVTGATAGFGECITRRFIQQ-GHKVIATGRRQER----LQELKDE-LGDNLYiaQLDVRNRAAIEEMLASLPAEWRNI 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  85 DVLINNAGIAFKMadpTPFHIQA----EVTIKTNFYGTRDVCTELLP--LIKPGGRVVNVSS 140
Cdd:PRK10538  76 DVLVNNAGLALGL---EPAHKASvedwETMIDTNNKGLVYMTRAVLPgmVERNHGHIINIGS 134
fabG PRK07792
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-269 1.15e-09

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181120 [Multi-domain]  Cd Length: 306  Bit Score: 57.87  E-value: 1.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDfLRKEYGGLD 85
Cdd:PRK07792  13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVA-TAVGLGGLD 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA-----FKMADpTPFHIQAEVTIKTNFYGTRDVCTELLPLIKPG-----GRVVNVSSmtslmalkgcspelq 155
Cdd:PRK07792  92 IVVNNAGITrdrmlFNMSD-EEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAggpvyGRIVNTSS--------------- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetitEEELVGlmnkfvedtknkvheKEGWPSsaYGVSKIGVTVLSRIHARKLSeeRGGdkILLNACCPGwVRTDM 235
Cdd:PRK07792 156 ---------EAGLVG---------------PVGQAN--YGAAKAGITALTLSAARALG--RYG--VRANAICPR-ARTAM 204
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 512960259 236 AGP--SATKSPEEGAETPI----------YLAllPPDSRGPHGQ-FV 269
Cdd:PRK07792 205 TADvfGDAPDVEAGGIDPLspehvvplvqFLA--SPAAAEVNGQvFI 249
RhlG_SDR_c cd08942
RhlG and related beta-ketoacyl reductases, classical (c) SDRs; Pseudomonas aeruginosa RhlG is ...
6-255 1.28e-09

RhlG and related beta-ketoacyl reductases, classical (c) SDRs; Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187646 [Multi-domain]  Cd Length: 250  Bit Score: 57.11  E-value: 1.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGlSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd08942    7 KIVLVTGGSRGIGRMIAQGFLEA-GARVIISARKAEACADAAEELSAYG-ECIAIPADLSSEEGIEALVARVAERSDRLD 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMA-DPTP---FHIQAEVTIKTNFYGTrdvcTELLPLIKPGG------RVVNVSSMTSLMAlkgcspelq 155
Cdd:cd08942   85 VLVNNAGATWGAPlEAFPesgWDKVMDINVKSVFFLT----QALLPLLRAAAtaenpaRVINIGSIAGIVV--------- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeelvglmnkfvedtknkvhekEGWPSSAYGVSKIGVTVLSrihaRKLSEERGGDKILLNACCPGWVRTDM 235
Cdd:cd08942  152 -------------------------------SGLENYSYGASKAAVHQLT----RKLAKELAGEHITVNAIAPGRFPSKM 196
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 512960259 236 AG-----PSATK------------SPEEGAETPIYLA 255
Cdd:cd08942  197 TAfllndPAALEaeeksiplgrwgRPEDMAGLAIMLA 233
PRK05993 PRK05993
SDR family oxidoreductase;
6-148 1.36e-09

SDR family oxidoreductase;


Pssm-ID: 180343 [Multi-domain]  Cd Length: 277  Bit Score: 57.34  E-value: 1.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARgraaVQQLQAEGLSPrfHQLDIDDLQSIRA-VRDFLRKEYGGL 84
Cdd:PRK05993   5 RSILITGCSSGIGAYCARALQSD-GWRVFATCRKEED----VAALEAEGLEA--FQLDYAEPESIAAlVAQVLELSGGRL 77
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNA--GIAFKMAD-PT-PFHIQAEvtikTNFYGTRDVCTELLPLI-KPG-GRVVNVSSMTSLMALK 148
Cdd:PRK05993  78 DALFNNGayGQPGAVEDlPTeALRAQFE----ANFFGWHDLTRRVIPVMrKQGqGRIVQCSSILGLVPMK 143
DHB_DH-like_SDR_c cd08937
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR; ...
6-140 1.52e-09

1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR; DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187642 [Multi-domain]  Cd Length: 256  Bit Score: 57.15  E-value: 1.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEArGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd08937    5 KVVVVTGAAQGIGRGVAERLAGE-GARVLLVDRSEL-VHEVLAEILAAGDAAHVHTADLETYAGAQGVVRAAVERFGRVD 82
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  86 VLINNAG--IAFKMADPTPFHiQAEVTIKTNFYGTRDVCTELLP--LIKPGGRVVNVSS 140
Cdd:cd08937   83 VLINNVGgtIWAKPYEHYEEE-QIEAEIRRSLFPTLWCCRAVLPhmLERQQGVIVNVSS 140
PRK12746 PRK12746
SDR family oxidoreductase;
6-235 1.90e-09

SDR family oxidoreductase;


Pssm-ID: 183718 [Multi-domain]  Cd Length: 254  Bit Score: 56.97  E-value: 1.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEY---- 81
Cdd:PRK12746   7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELqirv 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 --GGLDVLINNAGIA----FKMADPTPFHIQAEVTIKTNFYgtrdVCTELLPLIKPGGRVVNVSSMTSLMALKGcspelq 155
Cdd:PRK12746  87 gtSEIDILVNNAGIGtqgtIENTTEEIFDEIMAVNIKAPFF----LIQQTLPLLRAEGRVINISSAEVRLGFTG------ 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 156 qkfrsetiteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLSRIHARKLSeERGgdkILLNACCPGWVRTDM 235
Cdd:PRK12746 157 -----------------------------------SIAYGLSKGALNTMTLPLAKHLG-ERG---ITVNTIMPGYTKTDI 197
SDR_c8 cd08930
classical (c) SDR, subgroup 8; This subgroup has a fairly well conserved active site tetrad ...
5-148 1.96e-09

classical (c) SDR, subgroup 8; This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187635 [Multi-domain]  Cd Length: 250  Bit Score: 56.57  E-value: 1.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLcRRFSGDVVLTARDEARGRAAVQQLQAEGlSPRFH--QLDIDDLQSIRAVRDFLRKEYG 82
Cdd:cd08930    2 DKIILITGAAGLIGKAFCKAL-LSAGARLILADINAPALEQLKEELTNLY-KNRVIalELDITSKESIKELIESYLEKFG 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512960259  83 GLDVLINNAGIAFKmADPTPFH------IQA--EVTIKTNFYGTRDVCTELLPliKPGGRVVNVSSMTSLMALK 148
Cdd:cd08930   80 RIDILINNAYPSPK-VWGSRFEefpyeqWNEvlNVNLGGAFLCSQAFIKLFKK--QGKGSIINIASIYGVIAPD 150
PRK06113 PRK06113
7-alpha-hydroxysteroid dehydrogenase; Validated
6-234 2.02e-09

7-alpha-hydroxysteroid dehydrogenase; Validated


Pssm-ID: 135765 [Multi-domain]  Cd Length: 255  Bit Score: 56.78  E-value: 2.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGR--AAVQQL--QAEGLSprfhqLDIDDLQSIRAVRDFLRKEY 81
Cdd:PRK06113  12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHvvDEIQQLggQAFACR-----CDITSEQELSALADFALSKL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 GGLDVLINNAGiafkMADPTPFHIQAEVTI---KTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSlmalkgcspelqq 156
Cdd:PRK06113  87 GKVDILVNNAG----GGGPKPFDMPMADFRrayELNVFSFFHLSQLVAPEMEKngGGVILTITSMAA------------- 149
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259 157 kfrsetiteeelvglmnkfveDTKNKvhekegwPSSAYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPGWVRTD 234
Cdd:PRK06113 150 ---------------------ENKNI-------NMTSYASSKAAASHLVRNMAFDL----GEKNIRVNGIAPGAILTD 195
PRK06398 PRK06398
aldose dehydrogenase; Validated
6-235 2.83e-09

aldose dehydrogenase; Validated


Pssm-ID: 235794 [Multi-domain]  Cd Length: 258  Bit Score: 56.38  E-value: 2.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSgDVVLTARDEARGRAAvqqlqaeglspRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06398   7 KVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYNDV-----------DYFKVDVSNKEQVIKGIDYVISKYGRID 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI-AFKMADPTPFHIQAEVtIKTNFYGTRDVCTELLP--LIKPGGRVVNVSSMTSLMAlkgcspelqqkfrset 162
Cdd:PRK06398  75 ILVNNAGIeSYGAIHAVEEDEWDRI-INVNVNGIFLMSKYTIPymLKQDKGVIINIASVQSFAV---------------- 137
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512960259 163 iteeelvglmnkfvedTKNkvhekegwpSSAYGVSKIGVTVLSRIHARKLSEerggdKILLNACCPGWVRTDM 235
Cdd:PRK06398 138 ----------------TRN---------AAAYVTSKHAVLGLTRSIAVDYAP-----TIRCVAVCPGSIRTPL 180
DH-DHB-DH_SDR_c cd05331
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 ...
8-140 2.96e-09

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187592 [Multi-domain]  Cd Length: 244  Bit Score: 56.32  E-value: 2.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLcrrFSGDVVLTARDEArgraaVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVL 87
Cdd:cd05331    1 VIVTGAAQGIGRAVARHL---LQAGATVIALDLP-----FVLLLEYGDPLRLTPLDVADAAAVREVCSRLLAEHGPIDAL 72
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  88 INNAGIaFKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSS 140
Cdd:cd05331   73 VNCAGV-LRPGATDPLSTEDwEQTFAVNVTGVFNLLQAVAPHMKDrrTGAIVTVAS 127
PRK05717 PRK05717
SDR family oxidoreductase;
6-243 3.12e-09

SDR family oxidoreductase;


Pssm-ID: 168204 [Multi-domain]  Cd Length: 255  Bit Score: 56.05  E-value: 3.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLqaeGLSPRFHQLDI-DDLQSIRAVRDFLRkEYGGL 84
Cdd:PRK05717  11 RVALVTGAARGIGLGIAAWLIAE-GWQVVLADLDRERGSKVAKAL---GENAWFIAMDVaDEAQVAAGVAEVLG-QFGRL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIafkmADPtpfhiqaevtiktnfygtRDVCTELLPLiKPGGRVVNVSSMTSLMALKGCSPELQqkfrsetit 164
Cdd:PRK05717  86 DALVCNAAI----ADP------------------HNTTLESLSL-AHWNRVLAVNLTGPMLLAKHCAPYLR--------- 133
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 165 eeelvGLMNKFVEDTKNKVHEKEGwPSSAYGVSKIGVTVLSriHARKLSEergGDKILLNACCPGWVrtDMAGPSATKS 243
Cdd:PRK05717 134 -----AHNGAIVNLASTRARQSEP-DTEAYAASKGGLLALT--HALAISL---GPEIRVNAVSPGWI--DARDPSQRRA 199
PRK12938 PRK12938
3-ketoacyl-ACP reductase;
6-141 5.06e-09

3-ketoacyl-ACP reductase;


Pssm-ID: 171822 [Multi-domain]  Cd Length: 246  Bit Score: 55.40  E-value: 5.06e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAItrdlCRRFSGD----VVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEY 81
Cdd:PRK12938   4 RIAYVTGGMGGIGTSI----CQRLHKDgfkvVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  82 GGLDVLINNAGIAFKMADPTPFHIQAEVTIKTNFYGTRDVCTELLP-LIKPG-GRVVNVSSM 141
Cdd:PRK12938  80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDgMVERGwGRIINISSV 141
CR_SDR_c cd08936
Porcine peroxisomal carbonyl reductase like, classical (c) SDR; This subgroup contains porcine ...
6-152 6.44e-09

Porcine peroxisomal carbonyl reductase like, classical (c) SDR; This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187641 [Multi-domain]  Cd Length: 256  Bit Score: 55.24  E-value: 6.44e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLS---PRFHQLDIDDLQSIRAVRdflRKEYG 82
Cdd:cd08936   11 KVALVTASTDGIGLAIARRLAQD-GAHVVVSSRKQQNVDRAVATLQGEGLSvtgTVCHVGKAEDRERLVATA---VNLHG 86
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  83 GLDVLINNAGI---AFKMADPTP--FHIQAEVTIKTNFYGTRDVCTELLPliKPGGRVVNVSSMTSLMALKGCSP 152
Cdd:cd08936   87 GVDILVSNAAVnpfFGNILDSTEevWDKILDVNVKATALMTKAVVPEMEK--RGGGSVVIVSSVAAFHPFPGLGP 159
PKS_KR smart00822
This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step ...
9-93 6.92e-09

This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.


Pssm-ID: 214833 [Multi-domain]  Cd Length: 180  Bit Score: 54.03  E-value: 6.92e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259     9 LVTGANKGIGFAITRDLCRRFSGDVVLTAR---DEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:smart00822   4 LITGGLGGLGRALARWLAERGARRLVLLSRsgpDAPGAAALLAELEAAGARVTVVACDVADRDALAAVLAAIPAVEGPLT 83

                   ....*...
gi 512960259    86 VLINNAGI 93
Cdd:smart00822  84 GVIHAAGV 91
PRK08177 PRK08177
SDR family oxidoreductase;
6-240 1.06e-08

SDR family oxidoreductase;


Pssm-ID: 236173 [Multi-domain]  Cd Length: 225  Bit Score: 54.27  E-value: 1.06e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEAR--GRAAVQQLQAEglsprfhQLDIDDLQSIRAVRDFLRKEYgg 83
Cdd:PRK08177   2 RTALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQQdtALQALPGVHIE-------KLDMNDPASLDQLLQRLQGQR-- 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAfKMADPTPFHIQAEVTIK---TNFYGTRDVCTELLPLIKPGGRVVNVssMTSLMALKGCSPelqqkfrs 160
Cdd:PRK08177  72 FDLLFVNAGIS-GPAHQSAADATAAEIGQlflTNAIAPIRLARRLLGQVRPGQGVLAF--MSSQLGSVELPD-------- 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkvhekeGWPSSAYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTDMAGPSA 240
Cdd:PRK08177 141 ---------------------------GGEMPLYKASKAALNSMTRSFVAELGEP----TLTVLSMHPGWVKTDMGGDNA 189
fabG PRK08642
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
5-140 1.58e-08

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181517 [Multi-domain]  Cd Length: 253  Bit Score: 53.94  E-value: 1.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPrfhQLDIDDLQSIRAVRDFLRKEYG-G 83
Cdd:PRK08642   5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIAL---QADVTDREQVQAMFATATEHFGkP 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  84 LDVLINNAGIAFK---MADPTP-------FHIQAEVTIKtnfyGTRDVCTELLP-LIKPG-GRVVNVSS 140
Cdd:PRK08642  82 ITTVVNNALADFSfdgDARKKAdditwedFQQQLEGSVK----GALNTIQAALPgMREQGfGRIINIGT 146
PLN02253 PLN02253
xanthoxin dehydrogenase
5-146 1.58e-08

xanthoxin dehydrogenase


Pssm-ID: 177895 [Multi-domain]  Cd Length: 280  Bit Score: 54.44  E-value: 1.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEArGRAAVQQLQAEGLSPRFHqLDI---DDLQsiRAVrDFLRKEY 81
Cdd:PLN02253  18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDL-GQNVCDSLGGEPNVCFFH-CDVtveDDVS--RAV-DFTVDKF 92
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  82 GGLDVLINNAGIA------FKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIKpgGRVVNVSSMTSLMA 146
Cdd:PLN02253  93 GTLDIMVNNAGLTgppcpdIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKK--GSIVSLCSVASAIG 161
3KS_SDR_c cd08941
3-keto steroid reductase, classical (c) SDRs; 3-keto steroid reductase (in concert with other ...
5-94 1.85e-08

3-keto steroid reductase, classical (c) SDRs; 3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187645 [Multi-domain]  Cd Length: 290  Bit Score: 54.32  E-value: 1.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITrdlCRRFSGD-------VVLTARDEARGRAAVQQLQAeglsprFH----------QLDIDDL 67
Cdd:cd08941    1 RKVVLVTGANSGLGLAIC---ERLLAEDdenpeltLILACRNLQRAEAACRALLA------SHpdarvvfdyvLVDLSNM 71
                         90       100
                 ....*....|....*....|....*..
gi 512960259  68 QSIRAVRDFLRKEYGGLDVLINNAGIA 94
Cdd:cd08941   72 VSVFAAAKELKKRYPRLDYLYLNAGIM 98
HSD10-like_SDR_c cd05371
17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; HSD10, also known as ...
6-122 2.51e-08

17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs; HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187629 [Multi-domain]  Cd Length: 252  Bit Score: 53.45  E-value: 2.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGraavQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05371    3 LVAVVTGGASGLGLATVERLLAQ-GAKVVILDLPNSPG----ETVAKLGDNCRFVPVDVTSEKDVKAALALAKAKFGRLD 77
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 512960259  86 VLINNAGIA-------FKMADPTPFHIQAEVtIKTNFYGTRDVC 122
Cdd:cd05371   78 IVVNCAGIAvaaktynKKGQQPHSLELFQRV-INVNLIGTFNVI 120
PRK07069 PRK07069
short chain dehydrogenase; Validated
8-146 2.62e-08

short chain dehydrogenase; Validated


Pssm-ID: 180822 [Multi-domain]  Cd Length: 251  Bit Score: 53.56  E-value: 2.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQ----LQAEGLSPRFhQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK07069   2 AFITGAAGGLGRAIARRMAEQ-GAKVFLTDINDAAGLDAFAAeinaAHGEGVAFAA-VQDVTDEAQWQALLAQAADAMGG 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  84 LDVLINNAGI----AFKMADPTPFHIQAEVTIKTNFYGtrdvCTELLPLIKPG--GRVVNVSSMTSLMA 146
Cdd:PRK07069  80 LSVLVNNAGVgsfgAIEQIELDEWRRVMAINVESIFLG----CKHALPYLRASqpASIVNISSVAAFKA 144
PRK06500 PRK06500
SDR family oxidoreductase;
8-255 2.87e-08

SDR family oxidoreductase;


Pssm-ID: 235816 [Multi-domain]  Cd Length: 249  Bit Score: 53.42  E-value: 2.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRdlcrRFSGD---VVLTARDEARGRAAVQQLQAEGLSPRfhqLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK06500   9 ALITGGTSGIGLETAR----QFLAEgarVAITGRDPASLEAARAELGESALVIR---ADAGDVAAQKALAQALAEAFGRL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFKMadptPFHIQAEV----TIKTNFYGTRDVCTELLPLI-KPGGRVVNvssmTSLMAlkgcspelqqkfr 159
Cdd:PRK06500  82 DAVFINAGVAKFA----PLEDWDEAmfdrSFNTNVKGPYFLIQALLPLLaNPASIVLN----GSINA------------- 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 160 setiteeeLVGLMNkfvedtknkvhekegwpSSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTDMAG-- 237
Cdd:PRK06500 141 --------HIGMPN-----------------SSVYAASKAALLSL----AKTLSGELLPRGIRVNAVSPGPVQTPLYGkl 191
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 512960259 238 --PSATK-----------------SPEEGAETPIYLA 255
Cdd:PRK06500 192 glPEATLdavaaqiqalvplgrfgTPEEIAKAVLYLA 228
PRK07814 PRK07814
SDR family oxidoreductase;
6-275 2.87e-08

SDR family oxidoreductase;


Pssm-ID: 181131 [Multi-domain]  Cd Length: 263  Bit Score: 53.63  E-value: 2.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07814  11 QVAVVTGAGRGLGAAIALAFAEA-GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRLD 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIAFKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLI---KPGGRVVNVSSMTSLMALKGcspelqqkfrset 162
Cdd:PRK07814  90 IVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMlehSGGGSVINISSTMGRLAGRG------------- 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 iteeelvglmnkFVedtknkvhekegwpssAYGVSKIGVTVLSRIHARKLSEerggdKILLNACCPGWVRT--------- 233
Cdd:PRK07814 157 ------------FA----------------AYGTAKAALAHYTRLAALDLCP-----RIRVNAIAPGSILTsalevvaan 203
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 512960259 234 -DMAGPSATKSP-------EEGAETPIYLAllppdsrGPHGQFVQEKRVE 275
Cdd:PRK07814 204 dELRAPMEKATPlrrlgdpEDIAAAAVYLA-------SPAGSYLTGKTLE 246
PRK12742 PRK12742
SDR family oxidoreductase;
5-269 3.95e-08

SDR family oxidoreductase;


Pssm-ID: 183714 [Multi-domain]  Cd Length: 237  Bit Score: 52.84  E-value: 3.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRdlcrRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFhQLDIDDlqsIRAVRDFLRkEYGGL 84
Cdd:PRK12742   6 GKKVLVLGGSRGIGAAIVR----RFVTDGANVRFTYAGSKDAAERLAQETGATAV-QTDSAD---RDAVIDVVR-KSGAL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIAFkMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTS-LMALKGcspelqqkfrset 162
Cdd:PRK12742  77 DILVVNAGIAV-FGDALELDADDiDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGdRMPVAG------------- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 iteeelvglmnkfvedtknkvhekegwpSSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTD-------- 234
Cdd:PRK12742 143 ----------------------------MAAYAASKSALQGM----ARGLARDFGPRGITINVVQPGPIDTDanpangpm 190
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 512960259 235 ---MAGPSATK---SPEEGAETPIYLAllppdsrGPHGQFV 269
Cdd:PRK12742 191 kdmMHSFMAIKrhgRPEEVAGMVAWLA-------GPEASFV 224
PRK06123 PRK06123
SDR family oxidoreductase;
6-143 4.94e-08

SDR family oxidoreductase;


Pssm-ID: 180411 [Multi-domain]  Cd Length: 248  Bit Score: 52.47  E-value: 4.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06123   3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRLD 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  86 VLINNAGIAFKMADPTpfHIQAE---VTIKTNFYGTRDVCTELLPLIKP-----GGRVVNVSSMTS 143
Cdd:PRK06123  83 ALVNNAGILEAQMRLE--QMDAArltRIFATNVVGSFLCAREAVKRMSTrhggrGGAIVNVSSMAA 146
WcaG COG0451
Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis];
9-141 5.65e-08

Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440220 [Multi-domain]  Cd Length: 295  Bit Score: 52.67  E-value: 5.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfsG-DVVLTARDEARGRAAVQQLQAEglsprFHQLDIDDLQSI-RAVRDFlrkeygglDV 86
Cdd:COG0451    3 LVTGGAGFIGSHLARRLLAR--GhEVVGLDRSPPGAANLAALPGVE-----FVRGDLRDPEALaAALAGV--------DA 67
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  87 LINNAGIA-FKMADPtpfhiqaEVTIKTNFYGTRDVCTELLPliKPGGRVVNVSSM 141
Cdd:COG0451   68 VVHLAAPAgVGEEDP-------DETLEVNVEGTLNLLEAARA--AGVKRFVYASSS 114
PRK12747 PRK12747
short chain dehydrogenase; Provisional
6-269 5.81e-08

short chain dehydrogenase; Provisional


Pssm-ID: 183719 [Multi-domain]  Cd Length: 252  Bit Score: 52.38  E-value: 5.81e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITrdlcRRFSGDVVLTA------RDEArgRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRK 79
Cdd:PRK12747   5 KVALVTGASRGIGRAIA----KRLANDGALVAihygnrKEEA--EETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  80 EYGG------LDVLINNAGIA----FKMADPTPFHIQAEVTIKTNFYgtrdVCTELLPLIKPGGRVVNVSSMTSLMALkg 149
Cdd:PRK12747  79 ELQNrtgstkFDILINNAGIGpgafIEETTEQFFDRMVSVNAKAPFF----IIQQALSRLRDNSRIINISSAATRISL-- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 150 csPElqqkfrsetiteeelvglmnkFVedtknkvhekegwpssAYGVSKIGVTVLSRIHARKLseerGGDKILLNACCPG 229
Cdd:PRK12747 153 --PD---------------------FI----------------AYSMTKGAINTMTFTLAKQL----GARGITVNAILPG 189
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 512960259 230 WVRTDMAGP----------SATKSP-------EEGAETPIYLAllPPDSRGPHGQFV 269
Cdd:PRK12747 190 FIKTDMNAEllsdpmmkqyATTISAfnrlgevEDIADTAAFLA--SPDSRWVTGQLI 244
PRK05876 PRK05876
short chain dehydrogenase; Provisional
6-239 5.81e-08

short chain dehydrogenase; Provisional


Pssm-ID: 135637 [Multi-domain]  Cd Length: 275  Bit Score: 52.65  E-value: 5.81e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK05876   7 RGAVITGGASGIGLATGTEFARR-GARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHVD 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI--AFKMADPTpfHIQAEVTIKTNFYGTRDVCTELLPLI---KPGGRVVNVSSMTSLMALKGCspelqqkfrs 160
Cdd:PRK05876  86 VVFSNAGIvvGGPIVEMT--HDDWRWVIDVDLWGSIHTVEAFLPRLleqGTGGHVVFTASFAGLVPNAGL---------- 153
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpsSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTDMAGPS 239
Cdd:PRK05876 154 -------------------------------GAYGVAKYGVVGL----AETLAREVTADGIGVSVLCPMVVETNLVANS 197
DHRS6_like_SDR_c cd05368
human DHRS6-like, classical (c) SDRs; Human DHRS6, and similar proteins. These proteins are ...
6-247 5.98e-08

human DHRS6-like, classical (c) SDRs; Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).


Pssm-ID: 187626 [Multi-domain]  Cd Length: 241  Bit Score: 52.47  E-value: 5.98e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEargrAAVQQLQAEGLSPRfHQLDIDDLQSIRAvrdfLRKEYGGLD 85
Cdd:cd05368    3 KVALITAAAQGIGRAIALAFARE-GANVIATDINE----EKLKELERGPGITT-RVLDVTDKEQVAA----LAKEEGRID 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGIA-----FKMADPT-PFHIqaEVTIKTNFYGTRDVCTELLPliKPGGRVVNVSSMTSLMalkgcspelqqkfr 159
Cdd:cd05368   73 VLFNCAGFVhhgsiLDCEDDDwDFAM--NLNVRSMYLMIKAVLPKMLA--RKDGSIINMSSVASSI-------------- 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 160 setiteeelVGLMNKFVedtknkvhekegwpssaYGVSKIGVTVLSRIHARKLSeERGgdkILLNACCPGWVRTDMAGP- 238
Cdd:cd05368  135 ---------KGVPNRFV-----------------YSTTKAAVIGLTKSVAADFA-QQG---IRCNAICPGTVDTPSLEEr 184
                        250
                 ....*....|
gi 512960259 239 -SATKSPEEG 247
Cdd:cd05368  185 iQAQPDPEEA 194
PR_SDR_c cd05357
pteridine reductase (PR), classical (c) SDRs; Pteridine reductases (PRs), members of the SDR ...
6-96 6.04e-08

pteridine reductase (PR), classical (c) SDRs; Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187615 [Multi-domain]  Cd Length: 234  Bit Score: 52.28  E-value: 6.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSG-DVVLTARD-EARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:cd05357    1 AVALVTGAAKRIGRAIAEALAA--EGyRVVVHYNRsEAEAQRLKDELNALRNSAVLVQADLSDFAACADLVAAAFRAFGR 78
                         90
                 ....*....|...
gi 512960259  84 LDVLINNAGIAFK 96
Cdd:cd05357   79 CDVLVNNASAFYP 91
PRK12428 PRK12428
coniferyl-alcohol dehydrogenase;
59-141 9.65e-08

coniferyl-alcohol dehydrogenase;


Pssm-ID: 237099 [Multi-domain]  Cd Length: 241  Bit Score: 51.54  E-value: 9.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  59 FHQLDIDDLQSIRAVrdfLRKEYGGLDVLINNAGIAfKMADPtpfhiqaEVTIKTNFYGTRDVCTELLPLIKPGGRVVNV 138
Cdd:PRK12428  27 FIQADLGDPASIDAA---VAALPGRIDALFNIAGVP-GTAPV-------ELVARVNFLGLRHLTEALLPRMAPGGAIVNV 95

                 ...
gi 512960259 139 SSM 141
Cdd:PRK12428  96 ASL 98
PRK07024 PRK07024
SDR family oxidoreductase;
10-140 1.01e-07

SDR family oxidoreductase;


Pssm-ID: 235910 [Multi-domain]  Cd Length: 257  Bit Score: 51.85  E-value: 1.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  10 VTGANKGIGFAITRDLCRRfsGDVVLTArdeARGRAAVQQLQAE-GLSPRFH--QLDIDDLQSIR-AVRDFLrKEYGGLD 85
Cdd:PRK07024   7 ITGASSGIGQALAREYARQ--GATLGLV---ARRTDALQAFAARlPKAARVSvyAADVRDADALAaAAADFI-AAHGLPD 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  86 VLINNAGIAFKM-----ADPTPFhiqaEVTIKTNFYGtrdVCTELLPLIKP-----GGRVVNVSS 140
Cdd:PRK07024  81 VVIANAGISVGTlteerEDLAVF----REVMDTNYFG---MVATFQPFIAPmraarRGTLVGIAS 138
PRK08278 PRK08278
SDR family oxidoreductase;
1-92 1.58e-07

SDR family oxidoreductase;


Pssm-ID: 181349 [Multi-domain]  Cd Length: 273  Bit Score: 51.44  E-value: 1.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAITRDLCRRfSGDVVLTAR-DEARGR------AAVQQLQAEGLSPRFHQLDIDDLQSIRAV 73
Cdd:PRK08278   2 MSLSGKTLFITGASRGIGLAIALRAARD-GANIVIAAKtAEPHPKlpgtihTAAEEIEAAGGQALPLVGDVRDEDQVAAA 80
                         90
                 ....*....|....*....
gi 512960259  74 RDFLRKEYGGLDVLINNAG 92
Cdd:PRK08278  81 VAKAVERFGGIDICVNNAS 99
PRK06523 PRK06523
short chain dehydrogenase; Provisional
6-92 2.14e-07

short chain dehydrogenase; Provisional


Pssm-ID: 180604 [Multi-domain]  Cd Length: 260  Bit Score: 50.67  E-value: 2.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSGDVVLTArdeARGRAAVQQLQAEglsprFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06523  10 KRALVTGGTKGIGAATVARLLE--AGARVVTT---ARSRPDDLPEGVE-----FVAADLTTAEGCAAVARAVLERLGGVD 79

                 ....*..
gi 512960259  86 VLINNAG 92
Cdd:PRK06523  80 ILVHVLG 86
PRK09135 PRK09135
pteridine reductase; Provisional
1-104 3.66e-07

pteridine reductase; Provisional


Pssm-ID: 181668 [Multi-domain]  Cd Length: 249  Bit Score: 49.93  E-value: 3.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAITRDLCRRfsG-DVVLTAR---DEARGRAAVQQLQAEGlSPRFHQLDIDDLQSIRAVRDF 76
Cdd:PRK09135   2 MTDSAKVALITGGARRIGAAIARTLHAA--GyRVAIHYHrsaAEADALAAELNALRPG-SAAALQADLLDPDALPELVAA 78
                         90       100
                 ....*....|....*....|....*...
gi 512960259  77 LRKEYGGLDVLINNAGIAFkmadPTPFH 104
Cdd:PRK09135  79 CVAAFGRLDALVNNASSFY----PTPLG 102
PRK12481 PRK12481
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
6-234 3.71e-07

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 171531 [Multi-domain]  Cd Length: 251  Bit Score: 49.90  E-value: 3.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEArgraAVQQLQAEGLSPRFHQL--DIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK12481   9 KVAIITGCNTGLGQGMAIGLAKA-GADIVGVGVAEA----PETQAQVEALGRKFHFItaDLIQQKDIDSIVSQAVEVMGH 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIaFKMADPTPFHIQ-----AEVTIKTNFYGTRDVCTELLPLiKPGGRVVNVSSMTSlmalkgcspeLQQKF 158
Cdd:PRK12481  84 IDILINNAGI-IRRQDLLEFGNKdwddvININQKTVFFLSQAVAKQFVKQ-GNGGKIINIASMLS----------FQGGI 151
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259 159 RSetiteeelvglmnkfvedtknkvhekegwPSsaYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTD 234
Cdd:PRK12481 152 RV-----------------------------PS--YTASKSAVMGLTRALATELSQY----NINVNAIAPGYMATD 192
PRK07791 PRK07791
short chain dehydrogenase; Provisional
1-93 3.91e-07

short chain dehydrogenase; Provisional


Pssm-ID: 236099 [Multi-domain]  Cd Length: 286  Bit Score: 50.06  E-value: 3.91e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSC-SRVALVTGANKGIG------FA------ITRDLCRRFSGdvvlTARDEARGRAAVQQLQAEGLSPRFHQLDIDDL 67
Cdd:PRK07791   1 MGLLdGRVVIVTGAGGGIGrahalaFAaegarvVVNDIGVGLDG----SASGGSAAQAVVDEIVAAGGEAVANGDDIADW 76
                         90       100
                 ....*....|....*....|....*.
gi 512960259  68 QSIRAVRDFLRKEYGGLDVLINNAGI 93
Cdd:PRK07791  77 DGAANLVDAAVETFGGLDVLVNNAGI 102
PRK07577 PRK07577
SDR family oxidoreductase;
5-147 4.17e-07

SDR family oxidoreductase;


Pssm-ID: 181044 [Multi-domain]  Cd Length: 234  Bit Score: 49.73  E-value: 4.17e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDeargraavqqlQAEGLSPRFHQLDIDDLQSIRAVRDFLRkEYGGL 84
Cdd:PRK07577   3 SRTVLVTGATKGIGLALSLRLANL-GHQVIGIARS-----------AIDDFPGELFACDLADIEQTAATLAQIN-EIHPV 69
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  85 DVLINNAGIAFkmadPTPF------HIQAevTIKTNFYGTRDVCTELLP--LIKPGGRVVNVSSMTSLMAL 147
Cdd:PRK07577  70 DAIVNNVGIAL----PQPLgkidlaALQD--VYDLNVRAAVQVTQAFLEgmKLREQGRIVNICSRAIFGAL 134
Tthb094_like_SDR_c cd11730
Tthb094 and related proteins, classical (c) SDRs; Tthb094 from Thermus Thermophilus is a ...
8-151 5.96e-07

Tthb094 and related proteins, classical (c) SDRs; Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212496 [Multi-domain]  Cd Length: 206  Bit Score: 49.06  E-value: 5.96e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfSGDVVLTARDEargrAAVQQLQAEglspRFHQLDIDDLQSIRAVRDfLRKEYGGLDVL 87
Cdd:cd11730    1 ALILGATGGIGRALARALAGR-GWRLLLSGRDA----GALAGLAAE----VGALARPADVAAELEVWA-LAQELGPLDLL 70
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512960259  88 INNAGIAFK--MADPTPfhIQAEVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTSLMALKGCS 151
Cdd:cd11730   71 VYAAGAILGkpLARTKP--AAWRRILDANLTGAALVLKHALALLAAGARLVFLGAYPELVMLPGLS 134
DHRS1-like_SDR_c cd09763
human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs; This ...
5-147 6.92e-07

human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs; This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187664 [Multi-domain]  Cd Length: 265  Bit Score: 49.37  E-value: 6.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfsGDVV-LTARDEARG-RAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:cd09763    3 GKIALVTGASRGIGRGIALQLGEA--GATVyITGRTILPQlPGTAEEIEARGGKCIPVRCDHSDDDEVEALFERVAREQQ 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  83 G-LDVLINNA--GIAFKMADPTP--FHIQAEVTIKTNFYGTRD--VCTEL-LPLIKPGGR--VVNVSSMTSLMAL 147
Cdd:cd09763   81 GrLDILVNNAyaAVQLILVGVAKpfWEEPPTIWDDINNVGLRAhyACSVYaAPLMVKAGKglIVIISSTGGLEYL 155
PRK08993 PRK08993
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
6-143 7.86e-07

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 181605 [Multi-domain]  Cd Length: 253  Bit Score: 49.10  E-value: 7.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSG-DVVLTARDEARgrAAVQQLQAEG---LSPRFHQLDIDDLQSI--RAVrdflrK 79
Cdd:PRK08993  11 KVAVVTGCDTGLGQGMALGLAE--AGcDIVGINIVEPT--ETIEQVTALGrrfLSLTADLRKIDGIPALleRAV-----A 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  80 EYGGLDVLINNAGIaFKMADPTPFHIQ-----AEVTIKTNFYGTRDVCTELLPLIKpGGRVVNVSSMTS 143
Cdd:PRK08993  82 EFGHIDILVNNAGL-IRREDAIEFSEKdwddvMNLNIKSVFFMSQAAAKHFIAQGN-GGKIINIASMLS 148
KR_FAS_SDR_x cd05274
ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs; Ketoreductase, a module of ...
9-145 9.27e-07

ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs; Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187582 [Multi-domain]  Cd Length: 375  Bit Score: 49.30  E-value: 9.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRFSGDVVLTAR--DEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEyGGLDV 86
Cdd:cd05274  154 LITGGLGGLGLLVARWLAARGARHLVLLSRrgPAPRAAARAALLRAGGARVSVVRCDVTDPAALAALLAELAAG-GPLAG 232
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  87 LINNAGIAFK--MADPTPFHIQAEVTIKTnfYGTRDVCtELLPLiKPGGRVVNVSSMTSLM 145
Cdd:cd05274  233 VIHAAGVLRDalLAELTPAAFAAVLAAKV--AGALNLH-ELTPD-LPLDFFVLFSSVAALL 289
PRK12936 PRK12936
3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
6-164 1.26e-06

3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed


Pssm-ID: 171820 [Multi-domain]  Cd Length: 245  Bit Score: 48.37  E-value: 1.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEArgraaVQQLQAE-GLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:PRK12936   7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEK-----LEALAAElGERVKIFPANLSDRDEVKALGQKAEADLEGV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  85 DVLINNAGIA-----FKMADPTpFHIQAEVTIKTNFYGTRDVCTELLPliKPGGRVVNVSSM-------------TSLMA 146
Cdd:PRK12936  82 DILVNNAGITkdglfVRMSDED-WDSVLEVNLTATFRLTRELTHPMMR--RRYGRIINITSVvgvtgnpgqanycASKAG 158
                        170
                 ....*....|....*...
gi 512960259 147 LKGCSPELQQKFRSETIT 164
Cdd:PRK12936 159 MIGFSKSLAQEIATRNVT 176
RhaD COG3347
Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase ...
5-94 1.87e-06

Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase [Carbohydrate transport and metabolism];


Pssm-ID: 442576 [Multi-domain]  Cd Length: 674  Bit Score: 48.76  E-value: 1.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDID--DLQSIRAVRDFLRKEYG 82
Cdd:COG3347  425 GRVALVTGGAGGIGRATAARLAAE-GAAVVVADLDGEAAEAAAAELGGGYGADAVDATDVDvtAEAAVAAAFGFAGLDIG 503
                         90
                 ....*....|..
gi 512960259  83 GLDVLINNAGIA 94
Cdd:COG3347  504 GSDIGVANAGIA 515
SDR_c10 cd05373
classical (c) SDR, subgroup 10; This subgroup resembles the classical SDRs, but has an ...
7-92 2.76e-06

classical (c) SDR, subgroup 10; This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187631 [Multi-domain]  Cd Length: 238  Bit Score: 47.38  E-value: 2.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRdlcrRFSGD---VVLTARDEARGRA-AVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:cd05373    1 VAAVVGAGDGLGAAIAR----RFAAEgfsVALAARREAKLEAlLVDIIRDAGGSAKAVPTDARDEDEVIALFDLIEEEIG 76
                         90
                 ....*....|
gi 512960259  83 GLDVLINNAG 92
Cdd:cd05373   77 PLEVLVYNAG 86
PLN00015 PLN00015
protochlorophyllide reductase
9-142 3.54e-06

protochlorophyllide reductase


Pssm-ID: 177654  Cd Length: 308  Bit Score: 47.39  E-value: 3.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDVLI 88
Cdd:PLN00015   1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  89 NNAGIAFKMA-DPTPFHIQAEVTIKTNFYGTRDVCTELLPLIK----PGGRVVNVSSMT 142
Cdd:PLN00015  81 CNAAVYLPTAkEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKksdyPSKRLIIVGSIT 139
PRK07985 PRK07985
SDR family oxidoreductase;
6-260 4.37e-06

SDR family oxidoreductase;


Pssm-ID: 181188 [Multi-domain]  Cd Length: 294  Bit Score: 47.30  E-value: 4.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLT-ARDEARGRAAVQQLQAE-GLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK07985  50 RKALVTGGDSGIGRAAAIAYARE-GADVAISyLPVEEEDAQDVKKIIEEcGRKAVLLPGDLSDEKFARSLVHEAHKALGG 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAG--IAFK-MADPTPFHIQAevTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTSLMAlkgcSPELQQkfrs 160
Cdd:PRK07985 129 LDIMALVAGkqVAIPdIADLTSEQFQK--TFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP----SPHLLD---- 198
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwpssaYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTDM---AG 237
Cdd:PRK07985 199 ---------------------------------YAATKAAILNYSRGLAKQVAEK----GIRVNIVAPGPIWTALqisGG 241
                        250       260
                 ....*....|....*....|...
gi 512960259 238 PSATKSPEEGAETPIYLALLPPD 260
Cdd:PRK07985 242 QTQDKIPQFGQQTPMKRAGQPAE 264
Epimerase pfam01370
NAD dependent epimerase/dehydratase family; This family of proteins utilize NAD as a cofactor. ...
8-211 4.93e-06

NAD dependent epimerase/dehydratase family; This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.


Pssm-ID: 396097 [Multi-domain]  Cd Length: 238  Bit Score: 46.52  E-value: 4.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259    8 ALVTGANkgiGFaITRDLCRRFSG---DVVLTARDEARGRAAVqqlqaeGLSPRFHQLDIDDlqsIRAVRDFLRKEygGL 84
Cdd:pfam01370   1 ILVTGAT---GF-IGSHLVRRLLEkgyEVIGLDRLTSASNTAR------LADLRFVEGDLTD---RDALEKLLADV--RP 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   85 DVLINNAGIAFKMADptpfHIQAEVTIKTNFYGTRDVCTELLplIKPGGRVVNVSSmtSLMAlkgcsPELQQKFRSETIT 164
Cdd:pfam01370  66 DAVIHLAAVGGVGAS----IEDPEDFIEANVLGTLNLLEAAR--KAGVKRFLFASS--SEVY-----GDGAEIPQEETTL 132
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 512960259  165 EEELVglmnkfvedtknkvhekegwPSSAYGVSKIGVTVLSRIHARK 211
Cdd:pfam01370 133 TGPLA--------------------PNSPYAAAKLAGEWLVLAYAAA 159
PRK05875 PRK05875
short chain dehydrogenase; Provisional
6-258 5.16e-06

short chain dehydrogenase; Provisional


Pssm-ID: 180300 [Multi-domain]  Cd Length: 276  Bit Score: 46.72  E-value: 5.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGL--SPRFHQLDI-DDLQSIRAVrDFLRKEYG 82
Cdd:PRK05875   8 RTYLVTGGGSGIGKGVAAGLVAA-GAAVMIVGRNPDKLAAAAEEIEALKGagAVRYEPADVtDEDQVARAV-DAATAWHG 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGIAFKMADPTPFHIQA-EVTIKTNFYGT----RDVCTELLPliKPGGRVVNVSSMTSlmalkgcspelqqk 157
Cdd:PRK05875  86 RLHGVVHCAGGSETIGPITQIDSDAwRRTVDLNVNGTmyvlKHAARELVR--GGGGSFVGISSIAA-------------- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 158 frsetiteeelvglmnkfvedtkNKVHEKEGwpssAYGVSKIGVTVLSRIHArklsEERGGDKILLNACCPGWVRTDMAG 237
Cdd:PRK05875 150 -----------------------SNTHRWFG----AYGVTKSAVDHLMKLAA----DELGPSWVRVNSIRPGLIRTDLVA 198
                        250       260
                 ....*....|....*....|.
gi 512960259 238 PsATKSPEEGAEtpiYLALLP 258
Cdd:PRK05875 199 P-ITESPELSAD---YRACTP 215
cyclohexanol_reductase_SDR_c cd05330
cyclohexanol reductases, including levodione reductase, classical (c) SDRs; Cyloclohexanol ...
6-249 5.84e-06

cyclohexanol reductases, including levodione reductase, classical (c) SDRs; Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187591 [Multi-domain]  Cd Length: 257  Bit Score: 46.36  E-value: 5.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEA--RGRAAVQQL--QAEGLSPRfhqLDIDDLQSIRAVRDFLRKEY 81
Cdd:cd05330    4 KVVLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGleAAKAALLEIapDAEVLLIK---ADVSDEAQVEAYVDATVEQF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  82 GGLDVLINNAGIAFKMA-----DPTPFHIQAEVTIKTNFYGTRDVctelLPLIKP--GGRVVNVSSMTSLMalkgcspel 154
Cdd:cd05330   81 GRIDGFFNNAGIEGKQNltedfGADEFDKVVSINLRGVFYGLEKV----LKVMREqgSGMIVNTASVGGIR--------- 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 155 qqkfrsetiteeelvGLMNKfvedtknkvhekegwpsSAYGVSKIGVTVLSRIHARklseERGGDKILLNACCPGWVRTD 234
Cdd:cd05330  148 ---------------GVGNQ-----------------SGYAAAKHGVVGLTRNSAV----EYGQYGIRINAIAPGAILTP 191
                        250
                 ....*....|....*....
gi 512960259 235 MAGPSATK----SPEEGAE 249
Cdd:cd05330  192 MVEGSLKQlgpeNPEEAGE 210
hydroxyacyl-CoA-like_DH_SDR_c-like cd05353
(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Beta oxidation of fatty acids ...
4-140 7.62e-06

(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187611 [Multi-domain]  Cd Length: 250  Bit Score: 46.16  E-value: 7.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   4 CSRVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAA--------VQQLQAEGLSPRFHQLDIDDLQSIraVRD 75
Cdd:cd05353    4 DGRVVLVTGAGGGLGRAYALAFAERGAKVVVNDLGGDRKGSGKsssaadkvVDEIKAAGGKAVANYDSVEDGEKI--VKT 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  76 FLrKEYGGLDVLINNAGI----AFKMADPTPFHIQAEVTIKTNFYGTRDVCTELLPliKPGGRVVNVSS 140
Cdd:cd05353   82 AI-DAFGRVDILVNNAGIlrdrSFAKMSEEDWDLVMRVHLKGSFKVTRAAWPYMRK--QKFGRIINTSS 147
PRK12748 PRK12748
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
1-91 8.82e-06

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237189 [Multi-domain]  Cd Length: 256  Bit Score: 45.84  E-value: 8.82e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANK--GIGFAItrdlCRRFSG---DVVLT---ARDEARGRAAVQQ----LQAEGLSP--RFHQLDID- 65
Cdd:PRK12748   1 LPLMKKIALVTGASRlnGIGAAV----CRRLAAkgiDIFFTywsPYDKTMPWGMHDKepvlLKEEIESYgvRCEHMEIDl 76
                         90       100
                 ....*....|....*....|....*..
gi 512960259  66 -DLQSIRAVRDFLRKEYGGLDVLINNA 91
Cdd:PRK12748  77 sQPYAPNRVFYAVSERLGDPSILINNA 103
PRK07677 PRK07677
short chain dehydrogenase; Provisional
6-91 1.80e-05

short chain dehydrogenase; Provisional


Pssm-ID: 181077 [Multi-domain]  Cd Length: 252  Bit Score: 45.05  E-value: 1.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRdlcrRFSGD---VVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK07677   2 KVVIITGGSSGMGKAMAK----RFAEEganVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFG 77

                 ....*....
gi 512960259  83 GLDVLINNA 91
Cdd:PRK07677  78 RIDALINNA 86
PRK07576 PRK07576
short chain dehydrogenase; Provisional
6-139 2.28e-05

short chain dehydrogenase; Provisional


Pssm-ID: 236056 [Multi-domain]  Cd Length: 264  Bit Score: 44.56  E-value: 2.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07576  10 KNVVVVGGTSGINLGIAQAFARA-GANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPID 88
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 512960259  86 VLINNAGIAFkmadPTPFHIQAEVTIKT----NFYGTRDVCTELLPLI-KPGGRVVNVS 139
Cdd:PRK07576  89 VLVSGAAGNF----PAPAAGMSANGFKTvvdiDLLGTFNVLKAAYPLLrRPGASIIQIS 143
SDR_subfam_2 TIGR04504
SDR family mycofactocin-dependent oxidoreductase; Members of this protein subfamily are ...
6-240 2.71e-05

SDR family mycofactocin-dependent oxidoreductase; Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. All members occur in genomes that encode a cassette for the biosynthesis of mycofactocin, a proposed electron carrier of a novel redox pool. Characterized members of this family are described as NDMA-dependent, meaning that a blue aniline dye serving as an artificial electron acceptor is required for members of this family to cycle in vitro, since the bound NAD residue is not exchangeable. This family resembles TIGR03971 most closely in the N-terminal region, consistent with the published hypothesis of NAD interaction with mycofactocin. See EC 1.1.99.36. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 275297 [Multi-domain]  Cd Length: 259  Bit Score: 44.62  E-value: 2.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259    6 RVALVTGANKGIGFAITRDLCRRfsG-DVVLTarDEARGRAAV-------QQLQ--AEGLSPRFHQL--DIDDLQSIRAV 73
Cdd:TIGR04504   2 RVALVTGAARGIGAATVRRLAAD--GwRVVAV--DLCADDPAVgyplatrAELDavAAACPDQVLPViaDVRDPAALAAA 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   74 RDFLRKEYGGLDVLINNAGIafkMADPTPFHIQA----EVTIKTNFYGTRDVCTELLP--LIKP---GGRVVNVSSMTSL 144
Cdd:TIGR04504  78 VALAVERWGRLDAAVAAAGV---IAGGRPLWETTdaelDLLLDVNLRGVWNLARAAVPamLARPdprGGRFVAVASAAAT 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  145 MALkgcspelqqkfrsetiteeelvglmnkfvedtknkvhekegWPSSAYGVSKIGVTVLsrihARKLSEERGGDKILLN 224
Cdd:TIGR04504 155 RGL-----------------------------------------PHLAAYCAAKHAVVGL----VRGLAADLGGTGVTAN 189
                         250
                  ....*....|....*.
gi 512960259  225 ACCPGWVRTDMAGPSA 240
Cdd:TIGR04504 190 AVSPGSTRTAMLAATA 205
KR pfam08659
KR domain; This enzymatic domain is part of bacterial polyketide synthases and catalyzes the ...
9-93 3.39e-05

KR domain; This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.


Pssm-ID: 430138 [Multi-domain]  Cd Length: 180  Bit Score: 43.32  E-value: 3.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259    9 LVTGANKGIGFAITRDLCRRFSGDVVLTARD---EARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:pfam08659   4 LITGGLGGLGRELARWLAERGARHLVLLSRSaapRPDAQALIAELEARGVEVVVVACDVSDPDAVAALLAEIKAEGPPIR 83

                  ....*...
gi 512960259   86 VLINNAGI 93
Cdd:pfam08659  84 GVIHAAGV 91
PRK06924 PRK06924
(S)-benzoin forming benzil reductase;
6-235 4.87e-05

(S)-benzoin forming benzil reductase;


Pssm-ID: 180753 [Multi-domain]  Cd Length: 251  Bit Score: 43.52  E-value: 4.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsGDVVLT-ARDEARGRAAVQQLQAEGLSprFHQLDIDDLQSI-RAVRDFLR----K 79
Cdd:PRK06924   2 RYVIITGTSQGLGEAIANQLLEK--GTHVISiSRTENKELTKLAEQYNSNLT--FHSLDLQDVHELeTNFNEILSsiqeD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  80 EYGGLdVLINNAGIAFKM-------ADPTPFHIQAEVT---IKTNFYGTRdvcTELLPLIKpggRVVNVSSMTSlmalkg 149
Cdd:PRK06924  78 NVSSI-HLINNAGMVAPIkpiekaeSEELITNVHLNLLapmILTSTFMKH---TKDWKVDK---RVINISSGAA------ 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 150 cspelqqkfrsetiteeelvglmnkfvedtKNKvheKEGWpsSAYGVSKIGVTVLSRIHARKLSEERGGDKILlnACCPG 229
Cdd:PRK06924 145 ------------------------------KNP---YFGW--SAYCSSKAGLDMFTQTVATEQEEEEYPVKIV--AFSPG 187

                 ....*.
gi 512960259 230 WVRTDM 235
Cdd:PRK06924 188 VMDTNM 193
PRK08251 PRK08251
SDR family oxidoreductase;
9-235 4.98e-05

SDR family oxidoreductase;


Pssm-ID: 181324 [Multi-domain]  Cd Length: 248  Bit Score: 43.77  E-value: 4.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGfaitRDLCRRFSG---DVVLTARDEARGRAAVQQLQAE--GLSPRFHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK08251   6 LITGASSGLG----AGMAREFAAkgrDLALCARRTDRLEELKAELLARypGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  84 LDVLINNAGIAfKMADPTPFHIQA-EVTIKTNFYGTRDVCTELLPLIKP--GGRVVNVSSMTSLMALKGcspelqqkfrs 160
Cdd:PRK08251  82 LDRVIVNAGIG-KGARLGTGKFWAnKATAETNFVAALAQCEAAMEIFREqgSGHLVLISSVSAVRGLPG----------- 149
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259 161 etiteeelvglmnkfvedtknkvhekegwPSSAYGVSKIGVTVLsrihARKLSEERGGDKILLNACCPGWVRTDM 235
Cdd:PRK08251 150 -----------------------------VKAAYAASKAGVASL----GEGLRAELAKTPIKVSTIEPGYIRSEM 191
PRK06200 PRK06200
2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
6-93 5.03e-05

2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional


Pssm-ID: 235739 [Multi-domain]  Cd Length: 263  Bit Score: 43.79  E-value: 5.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAitrdLCRRFSGD---VVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQsiRAVRDFLRKeYG 82
Cdd:PRK06200   7 QVALITGGGSGIGRA----LVERFLAEgarVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQ--RAVDQTVDA-FG 79
                         90
                 ....*....|.
gi 512960259  83 GLDVLINNAGI 93
Cdd:PRK06200  80 KLDCFVGNAGI 90
PRK12744 PRK12744
SDR family oxidoreductase;
6-146 5.28e-05

SDR family oxidoreductase;


Pssm-ID: 183716 [Multi-domain]  Cd Length: 257  Bit Score: 43.57  E-value: 5.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVL---TARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK12744   9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIhynSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAFG 88
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512960259  83 GLDVLINNAGIAFK--MADPTP--FHIQAEVTIKTNFYgtrdvctellpLIKPGGRVVN-----VSSMTSLMA 146
Cdd:PRK12744  89 RPDIAINTVGKVLKkpIVEISEaeYDEMFAVNSKSAFF-----------FIKEAGRHLNdngkiVTLVTSLLG 150
PRK06171 PRK06171
sorbitol-6-phosphate 2-dehydrogenase; Provisional
6-140 7.53e-05

sorbitol-6-phosphate 2-dehydrogenase; Provisional


Pssm-ID: 180439 [Multi-domain]  Cd Length: 266  Bit Score: 43.08  E-value: 7.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRrfSGDVVLTArDEARGRAAVQQLQaeglsprFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06171  10 KIIIVTGGSSGIGLAIVKELLA--NGANVVNA-DIHGGDGQHENYQ-------FVPTDVSSAEEVNHTVAEIIEKFGRID 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512960259  86 VLINNAGIAFK--MADPTPFHIQAE-----------VTIKTNFYGTRDVCTELLPliKPGGRVVNVSS 140
Cdd:PRK06171  80 GLVNNAGINIPrlLVDEKDPAGKYElneaafdkmfnINQKGVFLMSQAVARQMVK--QHDGVIVNMSS 145
PRK09134 PRK09134
SDR family oxidoreductase;
6-93 8.15e-05

SDR family oxidoreductase;


Pssm-ID: 236389 [Multi-domain]  Cd Length: 258  Bit Score: 42.99  E-value: 8.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfsG-DVVL---TARDEArgRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEY 81
Cdd:PRK09134  10 RAALVTGAARRIGRAIALDLAAH--GfDVAVhynRSRDEA--EALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85
                         90
                 ....*....|..
gi 512960259  82 GGLDVLINNAGI 93
Cdd:PRK09134  86 GPITLLVNNASL 97
SDH_SDR_c cd05363
Sorbitol dehydrogenase (SDH), classical (c) SDR; This bacterial subgroup includes Rhodobacter ...
6-98 8.38e-05

Sorbitol dehydrogenase (SDH), classical (c) SDR; This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187621 [Multi-domain]  Cd Length: 254  Bit Score: 42.99  E-value: 8.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPrfhQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05363    4 KTALITGSARGIGRAFAQAYVRE-GARVAIADINLEAARATAAEIGPAACAI---SLDVTDQASIDRCVAALVDRWGSID 79
                         90
                 ....*....|...
gi 512960259  86 VLINNAGiAFKMA 98
Cdd:cd05363   80 ILVNNAA-LFDLA 91
ENR_SDR cd05372
Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; This bacterial subgroup of ...
8-149 8.92e-05

Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187630 [Multi-domain]  Cd Length: 250  Bit Score: 42.95  E-value: 8.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGA--NKGIGFAITRdLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:cd05372    4 ILITGIanDRSIAWGIAK-ALHEAGAELAFTYQPEALRKRVEKLAERLGESALVLPCDVSNDEEIKELFAEVKKDWGKLD 82
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  86 VLINnaGIAFkmADPTPFHIQAEVTIKTNFYGTRD--------VCTELLPLIKPGGRVVNVSSMTSLMALKG 149
Cdd:cd05372   83 GLVH--SIAF--APKVQLKGPFLDTSRKGFLKALDisayslvsLAKAALPIMNPGGSIVTLSYLGSERVVPG 150
PRK09009 PRK09009
SDR family oxidoreductase;
9-93 1.10e-04

SDR family oxidoreductase;


Pssm-ID: 181609 [Multi-domain]  Cd Length: 235  Bit Score: 42.36  E-value: 1.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRFSGdvvltARDEARGRAAVQQLQAEGLSprFHQLDIDDLQSIRAvrdfLRKEYGGLDVLI 88
Cdd:PRK09009   4 LIVGGSGGIGKAMVKQLLERYPD-----ATVHATYRHHKPDFQHDNVQ--WHALDVTDEAEIKQ----LSEQFTQLDWLI 72

                 ....*
gi 512960259  89 NNAGI 93
Cdd:PRK09009  73 NCVGM 77
fabG PRK05786
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-141 1.30e-04

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 235608 [Multi-domain]  Cd Length: 238  Bit Score: 42.44  E-value: 1.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEG---LSPRfhqlDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK05786   6 KKVAIIGVSEGLGYAVAYFALKE-GAQVCINSRNENKLKRMKKTLSKYGnihYVVG----DVSSTESARNVIEKAAKVLN 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  83 GLDVLINNAG--IAFKMADPTPFHIQAEVTIKTNFYGTRdvctELLPLIKPGGRVVNVSSM 141
Cdd:PRK05786  81 AIDGLVVTVGgyVEDTVEEFSGLEEMLTNHIKIPLYAVN----ASLRFLKEGSSIVLVSSM 137
PRK09186 PRK09186
flagellin modification protein A; Provisional
6-148 1.47e-04

flagellin modification protein A; Provisional


Pssm-ID: 236399 [Multi-domain]  Cd Length: 256  Bit Score: 42.28  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPR--FHQLDIDDLQSIRAVRDFLRKEYGG 83
Cdd:PRK09186   5 KTILITGAGGLIGSALVKAILEA-GGIVIAADIDKEALNELLESLGKEFKSKKlsLVELDITDQESLEEFLSKSAEKYGK 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512960259  84 LDVLINNA-------GIAFKMADPTPFHIQAEVTIKTNFYGTRDVCTELlpLIKPGGRVVNVSSMTSLMALK 148
Cdd:PRK09186  84 IDGAVNCAyprnkdyGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYF--KKQGGGNLVNISSIYGVVAPK 153
Lin1944_like_SDR_c cd11731
Lin1944 and related proteins, classical (c) SDRs; Lin1944 protein from Listeria Innocua is a ...
8-133 1.72e-04

Lin1944 and related proteins, classical (c) SDRs; Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212497 [Multi-domain]  Cd Length: 198  Bit Score: 41.41  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfsGDVVLTArdearGRaavqqlqaeglSPRFHQLDIDDLQSIRAvrdfLRKEYGGLDVL 87
Cdd:cd11731    1 IIVIGATGTIGLAVAQLLSAH--GHEVITA-----GR-----------SSGDYQVDITDEASIKA----LFEKVGHFDAI 58
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 512960259  88 INNAGIAFKM--ADPTPfhIQAEVTIKTNFYGTRDVCTELLPLIKPGG 133
Cdd:cd11731   59 VSTAGDAEFAplAELTD--ADFQRGLNSKLLGQINLVRHGLPYLNDGG 104
PRK06194 PRK06194
hypothetical protein; Provisional
6-94 1.75e-04

hypothetical protein; Provisional


Pssm-ID: 180458 [Multi-domain]  Cd Length: 287  Bit Score: 42.31  E-value: 1.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGfaitRDLCRRFSG---DVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:PRK06194   7 KVAVITGAASGFG----LAFARIGAAlgmKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG 82
                         90
                 ....*....|..
gi 512960259  83 GLDVLINNAGIA 94
Cdd:PRK06194  83 AVHLLFNNAGVG 94
PRK08340 PRK08340
SDR family oxidoreductase;
9-92 1.90e-04

SDR family oxidoreductase;


Pssm-ID: 169390 [Multi-domain]  Cd Length: 259  Bit Score: 42.10  E-value: 1.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQldidDLQSIRAVRDFLRKEY---GGLD 85
Cdd:PRK08340   4 LVTASSRGIGFNVARELLKK-GARVVISSRNEENLEKALKELKEYGEVYAVKA----DLSDKDDLKNLVKEAWellGGID 78

                 ....*..
gi 512960259  86 VLINNAG 92
Cdd:PRK08340  79 ALVWNAG 85
sepiapter_red TIGR01500
sepiapterin reductase; This model describes sepiapterin reductase, a member of the short chain ...
7-151 2.98e-04

sepiapterin reductase; This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.


Pssm-ID: 273660 [Multi-domain]  Cd Length: 256  Bit Score: 41.44  E-value: 2.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259    7 VALVTGANKGIGFAITRDLCRRFSG---DVVLTARDEargrAAVQQLQAEGLSPRfHQLDID----DLQSIRAVRDFLR- 78
Cdd:TIGR01500   2 VCLVTGASRGFGRTIAQELAKCLKSpgsVLVLSARND----EALRQLKAEIGAER-SGLRVVrvslDLGAEAGLEQLLKa 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   79 -------KEYGGLdVLINNAGIAF---KMADPTPFHIQAEVTIKTNFYGTRDVCTELLPLIK--PGGR--VVNVSSMTSL 144
Cdd:TIGR01500  77 lrelprpKGLQRL-LLINNAGTLGdvsKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKdsPGLNrtVVNISSLCAI 155

                  ....*..
gi 512960259  145 MALKGCS 151
Cdd:TIGR01500 156 QPFKGWA 162
PRK06483 PRK06483
dihydromonapterin reductase; Provisional
9-91 3.00e-04

dihydromonapterin reductase; Provisional


Pssm-ID: 180586 [Multi-domain]  Cd Length: 236  Bit Score: 41.07  E-value: 3.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfSGDVVLTARDEargRAAVQQLQAEGLSprFHQLDIDDLQSIRAVRDFLRKEYGGLDVLI 88
Cdd:PRK06483   6 LITGAGQRIGLALAWHLLAQ-GQPVIVSYRTH---YPAIDGLRQAGAQ--CIQADFSTNAGIMAFIDELKQHTDGLRAII 79

                 ...
gi 512960259  89 NNA 91
Cdd:PRK06483  80 HNA 82
PRK06720 PRK06720
hypothetical protein; Provisional
1-93 3.55e-04

hypothetical protein; Provisional


Pssm-ID: 180669 [Multi-domain]  Cd Length: 169  Bit Score: 40.34  E-value: 3.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   1 MSSCSRVALVTGANKGIGFAiTRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKE 80
Cdd:PRK06720  12 MKLAGKVAIVTGGGIGIGRN-TALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA 90
                         90
                 ....*....|...
gi 512960259  81 YGGLDVLINNAGI 93
Cdd:PRK06720  91 FSRIDMLFQNAGL 103
PRK07775 PRK07775
SDR family oxidoreductase;
6-127 4.47e-04

SDR family oxidoreductase;


Pssm-ID: 181113 [Multi-domain]  Cd Length: 274  Bit Score: 40.89  E-value: 4.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK07775  11 RPALVAGASSGIGAATAIELAAA-GFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEIE 89
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 512960259  86 VLINNAG-IAFKMA---DPTPFHIQaevtIKTNFYGTRDVCTELLP 127
Cdd:PRK07775  90 VLVSGAGdTYFGKLheiSTEQFESQ----VQIHLVGANRLATAVLP 131
PRK05867 PRK05867
SDR family oxidoreductase;
6-255 6.68e-04

SDR family oxidoreductase;


Pssm-ID: 135631 [Multi-domain]  Cd Length: 253  Bit Score: 40.40  E-value: 6.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK05867  10 KRALITGASTGIGKRVALAYVEA-GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGID 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI--AFKMAD-PTPFHIQAEVTIKTNFYGTRDVCTELLPLIKPGGRVVNVSSMTslmalkgcspelqqkfrSET 162
Cdd:PRK05867  89 IAVCNAGIitVTPMLDmPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMS-----------------GHI 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 ITEEELVGlmnkfvedtknkvhekegwpssAYGVSKIGVTVLSRIHARKLSEErggdKILLNACCPGWVRTDMAGPSA-- 240
Cdd:PRK05867 152 INVPQQVS----------------------HYCASKAAVIHLTKAMAVELAPH----KIRVNSVSPGYILTELVEPYTey 205
                        250       260
                 ....*....|....*....|....*..
gi 512960259 241 ------------TKSPEEGAETPIYLA 255
Cdd:PRK05867 206 qplwepkiplgrLGRPEELAGLYLYLA 232
fabG PRK06550
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
6-146 7.59e-04

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 180617 [Multi-domain]  Cd Length: 235  Bit Score: 39.95  E-value: 7.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRfSGDVVltardeargraAVQQLQAEGLSPRFH--QLDI-DDLQSiravrdfLRKEYG 82
Cdd:PRK06550   6 KTVLITGAASGIGLAQARAFLAQ-GAQVY-----------GVDKQDKPDLSGNFHflQLDLsDDLEP-------LFDWVP 66
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGIafkMADPTPFHIQAEVTIK----TNFYGTRDVCTELLP--LIKPGGRVVNVSSMTSLMA 146
Cdd:PRK06550  67 SVDILCNTAGI---LDDYKPLLDTSLEEWQhifdTNLTSTFLLTRAYLPqmLERKSGIIINMCSIASFVA 133
PLN02780 PLN02780
ketoreductase/ oxidoreductase
8-140 7.94e-04

ketoreductase/ oxidoreductase


Pssm-ID: 166421 [Multi-domain]  Cd Length: 320  Bit Score: 40.23  E-value: 7.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLDV- 86
Cdd:PLN02780  56 ALVTGPTDGIGKGFAFQLARK-GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGLDVg 134
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512960259  87 -LINNAGIAFKMAdpTPFH-IQAEVT---IKTNFYGTRDVCTELLP--LIKPGGRVVNVSS 140
Cdd:PLN02780 135 vLINNVGVSYPYA--RFFHeVDEELLknlIKVNVEGTTKVTQAVLPgmLKRKKGAIINIGS 193
PRK07023 PRK07023
SDR family oxidoreductase;
8-93 9.22e-04

SDR family oxidoreductase;


Pssm-ID: 180796 [Multi-domain]  Cd Length: 243  Bit Score: 39.61  E-value: 9.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   8 ALVTGANKGIGFAITRDLCRRfsGDVVLTArdeARGRAAVQQLQAeGLSPRFHQLDIDDLQSIRAV--RDFLRKEYGGLD 85
Cdd:PRK07023   4 AIVTGHSRGLGAALAEQLLQP--GIAVLGV---ARSRHPSLAAAA-GERLAEVELDLSDAAAAAAWlaGDLLAAFVDGAS 77
                         90
                 ....*....|
gi 512960259  86 --VLINNAGI 93
Cdd:PRK07023  78 rvLLINNAGT 87
PRK06139 PRK06139
SDR family oxidoreductase;
6-144 9.55e-04

SDR family oxidoreductase;


Pssm-ID: 235713 [Multi-domain]  Cd Length: 330  Bit Score: 40.09  E-value: 9.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSgDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYGGLD 85
Cdd:PRK06139   8 AVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRID 86
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  86 VLINNAGI-AFKMADPTPFHIQAEVtIKTNFYGTRDVCTELLPLIKPGGRVVNVsSMTSL 144
Cdd:PRK06139  87 VWVNNVGVgAVGRFEETPIEAHEQV-IQTNLIGYMRDAHAALPIFKKQGHGIFI-NMISL 144
NDUFA9_like_SDR_a cd05271
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, ...
7-99 1.28e-03

NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs; This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.


Pssm-ID: 187579 [Multi-domain]  Cd Length: 273  Bit Score: 39.54  E-value: 1.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   7 VALVTGANKGIGFAITRDLCRRFSgDVVLTARDEARGRaavqQLQAEGLSPR--FHQLDIDDLQSIravrdflRKEYGGL 84
Cdd:cd05271    2 VVTVFGATGFIGRYVVNRLAKRGS-QVIVPYRCEAYAR----RLLVMGDLGQvlFVEFDLRDDESI-------RKALEGS 69
                         90       100
                 ....*....|....*....|
gi 512960259  85 DVLINNAGI-----AFKMAD 99
Cdd:cd05271   70 DVVINLVGRlyetkNFSFED 89
HSDL2_SDR_c cd09762
human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs; This subgroup ...
10-269 1.87e-03

human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs; This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187663 [Multi-domain]  Cd Length: 243  Bit Score: 38.97  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  10 VTGANKGIGFAITRDLCRRfSGDVVLTARD-EARGR------AAVQQLQAEGLSPRFHQLDIDDLQSIRAVRDFLRKEYG 82
Cdd:cd09762    8 ITGASRGIGKAIALKAARD-GANVVIAAKTaEPHPKlpgtiyTAAEEIEAAGGKALPCIVDIRDEDQVRAAVEKAVEKFG 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259  83 GLDVLINNAGiafkmadptpfhiqaevtiKTNFYGTRDVCTELLPLIKpggrvvNVSSMTSLMALKGCSPELQQKFRSET 162
Cdd:cd09762   87 GIDILVNNAS-------------------AISLTGTLDTPMKRYDLMM------GVNTRGTYLCSKACLPYLKKSKNPHI 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259 163 ITEEELVGLMNKFVEdtknkvhekegwPSSAYGVSKIGVTVLSRIHArklsEERGGDKILLNACcpgWVRT-------DM 235
Cdd:cd09762  142 LNLSPPLNLNPKWFK------------NHTAYTMAKYGMSMCVLGMA----EEFKPGGIAVNAL---WPRTaiataamNM 202
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 512960259 236 AGPSA----TKSPEEGAETPiyLALLPPDSRGPHGQFV 269
Cdd:cd09762  203 LGGVDvaacCRKPEIMADAA--YAILTKPSSEFTGNFL 238
PRK09291 PRK09291
SDR family oxidoreductase;
9-144 3.52e-03

SDR family oxidoreductase;


Pssm-ID: 181762 [Multi-domain]  Cd Length: 257  Bit Score: 38.06  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   9 LVTGANKGIGFAITRDLCRRfSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDLQSI-RAVR-DFlrkeygglDV 86
Cdd:PRK09291   6 LITGAGSGFGREVALRLARK-GHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRaQAAEwDV--------DV 76
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512960259  87 LINNAGI--AFKMADptpfhIQAEVTIK---TNFYGTRDVCTELLP-LIKPG-GRVVNVSSMTSL 144
Cdd:PRK09291  77 LLNNAGIgeAGAVVD-----IPVELVRElfeTNVFGPLELTQGFVRkMVARGkGKVVFTSSMAGL 136
SDH_SDR_c_like cd05322
Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Sorbitol 6-phosphate ...
6-117 5.49e-03

Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187583 [Multi-domain]  Cd Length: 257  Bit Score: 37.44  E-value: 5.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   6 RVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAvQQLQAE-GLSPRFHQLDIDDLQSIRAVRDFLRKEYGGL 84
Cdd:cd05322    3 QVAVVIGGGQTLGEFLCHGLAEAGYDVAVADINSENAEKVA-DEINAEyGEKAYGFGADATNEQSVIALSKGVDEIFKRV 81
                         90       100       110
                 ....*....|....*....|....*....|....
gi 512960259  85 DVLINNAGIAfKMADPTPFHIQA-EVTIKTNFYG 117
Cdd:cd05322   82 DLLVYSAGIA-KSAKITDFELGDfDRSLQVNLVG 114
PRK12384 PRK12384
sorbitol-6-phosphate dehydrogenase; Provisional
5-117 7.01e-03

sorbitol-6-phosphate dehydrogenase; Provisional


Pssm-ID: 183489 [Multi-domain]  Cd Length: 259  Bit Score: 37.32  E-value: 7.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   5 SRVALVTGANKGIGFAitrdLCRRFSG---DVVLTARDEARGRAAVQQLQAE---GLSPRFhQLDIDDLQSIRAVRDFLR 78
Cdd:PRK12384   2 NQVAVVIGGGQTLGAF----LCHGLAEegyRVAVADINSEKAANVAQEINAEygeGMAYGF-GADATSEQSVLALSRGVD 76
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 512960259  79 KEYGGLDVLINNAGIAfKMADPTPFHIQA-EVTIKTNFYG 117
Cdd:PRK12384  77 EIFGRVDLLVYNAGIA-KAAFITDFQLGDfDRSLQVNLVG 115
UDP_invert_4-6DH_SDR_e cd05237
UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; ...
4-121 9.88e-03

UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.


Pssm-ID: 187548 [Multi-domain]  Cd Length: 287  Bit Score: 36.83  E-value: 9.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512960259   4 CSRVALVTGANKGIGFAITRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQL--DIDDLQSIRAVRDFlrkey 81
Cdd:cd05237    1 KGKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFIigDVRDKERLRRAFKE----- 75
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 512960259  82 GGLDVLINNAgiAFK---MADPTPFhiQAevtIKTNFYGTRDV 121
Cdd:cd05237   76 RGPDIVFHAA--ALKhvpSMEDNPE--EA---IKTNVLGTKNV 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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